Clone BO16650 Report

Search the DGRC for BO16650

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptObp57a-RA
Protein status:BO16650.pep: validated full length
Sequenced Size:541

Clone Sequence Records

BO16650.5prime Sequence

508 bp (506 high quality bases) assembled on 2006-10-13

> BO16650.5prime
GAAGTTATCAGTCGACATGTTCAACACTAGACTTGCCATTTTTTTGCTTC
TTATCGTTGTTTCGCTTAGCCAAGCTAAGGAAAGCCAACCCTTTGACTTT
TTCGAAGGAACCTATGACGATTTTATTGATTGTCTGAGAATCAATAATAT
TACCATTGAAGAGTATGAGAAGTTTGACGATACCGACAATTTGGATAATG
TCCTCAAGGAAAATGTCGAACTGAAGCACAAGTGCAACATTAAGTGTCAA
CTGGAAAGAGAGCCAACCAAATGGCTAAATGCTCGGGGTGAAGTCGATCT
GAAATCAATGAAAGCAACCAGTGAGACAGCGGTATCCATATCAAAGTGCA
TGGAGAAGGCTCCCCAAGAAACCTGTGCCTACGTCTATAAATTGGTAATA
TGTGCATTCAAATCCGGACATTCAGTCATCAAGTTCGATTCATATGAACA
AATACAAGAGGAAACCGCTGGACTAATAGCTGAACAGCAGGCGGATCTGT
TTGATTAC

BO16650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30141-PA 510 Obp57a-RA 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57a-RA 558 CG30141-RA 20..511 17..508 2460 100 Plus
Obp57b-RB 823 CG30142-RB 142..407 143..408 250 74.3 Plus
Obp57b-RA 477 CG30142-RA 142..407 143..408 250 74.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20505281..20505711 78..508 2155 100 Plus
2R 25286936 2R 20505169..20505232 17..80 320 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:40:39 has no hits.

BO16650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:31 Download gff for BO16650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30141-PA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:36:16 Download gff for BO16650.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp57a-RA 12..511 10..508 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:28 Download gff for BO16650.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp57a-RA 12..511 10..508 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:28 Download gff for BO16650.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20505161..20505231 10..79 95 -> Plus
2R 20505283..20505711 80..508 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:36:16 Download gff for BO16650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16392666..16392736 10..79 95 -> Plus
arm_2R 16392788..16393216 80..508 100   Plus

BO16650.complete Sequence

541 bp assembled on 2007-03-23

GenBank Submission: FJ633875

> BO16650.complete
GAAGTTATCAGTCGACATGTTCAACACTAGACTTGCCATTTTTTTGCTTC
TTATCGTTGTTTCGCTTAGCCAAGCTAAGGAAAGCCAACCCTTTGACTTT
TTCGAAGGAACCTATGACGATTTTATTGATTGTCTGAGAATCAATAATAT
TACCATTGAAGAGTATGAGAAGTTTGACGATACCGACAATTTGGATAATG
TCCTCAAGGAAAATGTCGAACTGAAGCACAAGTGCAACATTAAGTGTCAA
CTGGAAAGAGAGCCAACCAAATGGCTAAATGCTCGGGGTGAAGTCGATCT
GAAATCAATGAAAGCAACCAGTGAGACAGCGGTATCCATATCAAAGTGCA
TGGAGAAGGCTCCCCAAGAAACCTGTGCCTACGTCTATAAATTGGTAATA
TGTGCATTCAAATCCGGACATTCAGTCATCAAGTTCGATTCATATGAACA
AATACAAGAGGAAACCGCTGGACTAATAGCTGAACAGCAGGCGGATCTGT
TTGATTACGATACCATCGATTTAGCAAGCTTTCTAGACCAT

BO16650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57a-RA 510 CG30141-PA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57a-RA 558 CG30141-RA 20..526 17..523 2535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20505281..20505726 78..523 2230 100 Plus
2R 25286936 2R 20505169..20505232 17..80 320 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:41:58 has no hits.

BO16650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:48 Download gff for BO16650.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57a-RA 1..510 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:56:54 Download gff for BO16650.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57a-RA 1..512 16..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:44 Download gff for BO16650.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57a-RA 25..526 22..525 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:48 Download gff for BO16650.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57a-RA 1..512 16..527 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:47:16 Download gff for BO16650.complete
Subject Subject Range Query Range Percent Splice Strand
Obp57a-RA 25..526 22..525 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:16 Download gff for BO16650.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20505174..20505231 22..79 100 -> Plus
2R 20505283..20505726 80..525 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:44 Download gff for BO16650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16392679..16392736 22..79 100 -> Plus
arm_2R 16392788..16393231 80..525 99   Plus

BO16650.pep Sequence

Translation from 16 to 541

> BO16650.pep
MFNTRLAIFLLLIVVSLSQAKESQPFDFFEGTYDDFIDCLRINNITIEEY
EKFDDTDNLDNVLKENVELKHKCNIKCQLEREPTKWLNARGEVDLKSMKA
TSETAVSISKCMEKAPQETCAYVYKLVICAFKSGHSVIKFDSYEQIQEET
AGLIAEQQADLFDYDTIDLASFLDH

BO16650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Obp57a-PA 169 CG30141-PA 1..169 1..169 876 100 Plus
Obp57b-PB 141 CG30142-PB 1..138 1..138 408 55.1 Plus
Obp57b-PA 141 CG30142-PA 1..138 1..138 408 55.1 Plus