Clone Sequence Records
BO16651.3prime Sequence
452 bp (452 high quality bases) assembled on 2006-10-13
> BO16651.3prime
ATGGTCTAGAAAGCTTGCTCCTCTGTGATTTCGAGTTCTTTGGCCCTTCT
TAACATCTGATAATCTTACTCCTTCGTAGCACTCGGAGATTTGCCAGGCG
AATTCACAAGACTCGTCATGGGATGTCTCGCTCTTAATCATATTACACGT
CGCTTCCATTCGCTCTACGGCTTCCGCGGTAACTATATGGCCTAGAACTC
GGTCAAAAGCACCGGGTATTATCTGGTTATCGGCGATAATGCCAATGTTT
TCTAGAAAACAGCGGAAAAAGCACTTGACACTATGGCCAGGGTCGTCGGT
CTCATGACGATTCGCAACATCTTGTGCTGTGATGCCCGCCGCCGCCATGC
ATTGATCCTTAATGGGACCTGCTTGTACGAAACATGTTGGTAATGTAACG
ACGACTAACAATAATGCACAGCAGGTGAAAAAATGCATGTCGACTGATAA
CT
BO16651.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30448-PA | 423 | Obp56i-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56i-RA | 569 | CG30448-RA | 29..448 | 438..19 | 2100 | 100 | Minus |
Obp56i-RB | 938 | CG30448-RB | 458..817 | 378..19 | 1800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19868234..19868593 | 378..19 | 1800 | 100 | Minus |
2R | 25286936 | 2R | 19868116..19868178 | 438..376 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:33:32 has no hits.
BO16651.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:32 Download gff for
BO16651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30448-PA | 1..423 | 15..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:54 Download gff for
BO16651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 29..453 | 14..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:26 Download gff for
BO16651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 29..453 | 14..438 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:26 Download gff for
BO16651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19868234..19868598 | 14..378 | 99 | | Minus |
2R | 19868116..19868175 | 379..438 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:54 Download gff for
BO16651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15755621..15755680 | 379..438 | 100 | -> | Minus |
arm_2R | 15755739..15756103 | 14..378 | 99 | | Minus |
BO16651.5prime Sequence
452 bp (452 high quality bases) assembled on 2006-10-13
> BO16651.5prime
GAAGTTATCAGTCGACATGCATTTTTTCACCTGCTGTGCATTATTGTTAG
TCGTCGTTACATTACCAACATGTTTCGTACAAGCAGGTCCCATTAAGGAT
CAATGCATGGCGGCGGCGGGCATCACAGCACAAGATGTTGCGAATCGTCA
TGAGACCGACGACCCTGGCCATAGTGTCAAGTGCTTTTTCCGCTGTTTTC
TAGAAAACATTGGCATTATCGCCGATAACCAGATAATACCCGGTGCTTTT
GACCGAGTTCTAGGCCATATAGTTACCGCGGAAGCCGTAGAGCGAATGGA
AGCGACGTGTAATATGATTAAGAGCGAGACATCCCATGACGAGTCTTGTG
AATTCGCCTGGCAAATCTCCGAGTGCTACGAAGGAGTAAGATTATCAGAT
GTTAAGAAGGGCCAAAGAACTCGAAATCACAGAGGAGCAAGCTTTCTAGA
CC
BO16651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30448-PA | 423 | Obp56i-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56i-RA | 569 | CG30448-RA | 29..448 | 17..436 | 2100 | 100 | Plus |
Obp56i-RB | 938 | CG30448-RB | 458..817 | 77..436 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19868234..19868593 | 77..436 | 1800 | 100 | Plus |
2R | 25286936 | 2R | 19868116..19868178 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:40:48 has no hits.
BO16651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:32 Download gff for
BO16651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30448-PA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:12 Download gff for
BO16651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 29..453 | 17..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:02 Download gff for
BO16651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 29..453 | 17..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:02 Download gff for
BO16651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19868116..19868175 | 17..76 | 100 | -> | Plus |
2R | 19868234..19868598 | 77..441 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:12 Download gff for
BO16651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15755621..15755680 | 17..76 | 100 | -> | Plus |
arm_2R | 15755739..15756103 | 77..441 | 99 | | Plus |
BO16651.complete Sequence
454 bp assembled on 2006-10-11
GenBank Submission: FJ633876
> BO16651.complete
GAAGTTATCAGTCGACATGCATTTTTTCACCTGCTGTGCATTATTGTTAG
TCGTCGTTACATTACCAACATGTTTCGTACAAGCAGGTCCCATTAAGGAT
CAATGCATGGCGGCGGCGGGCATCACAGCACAAGATGTTGCGAATCGTCA
TGAGACCGACGACCCTGGCCATAGTGTCAAGTGCTTTTTCCGCTGTTTTC
TAGAAAACATTGGCATTATCGCCGATAACCAGATAATACCCGGTGCTTTT
GACCGAGTTCTAGGCCATATAGTTACCGCGGAAGCCGTAGAGCGAATGGA
AGCGACGTGTAATATGATTAAGAGCGAGACATCCCATGACGAGTCTTGTG
AATTCGCCTGGCAAATCTCCGAGTGCTACGAAGGAGTAAGATTATCAGAT
GTTAAGAAGGGCCAAAGAACTCGAAATCACAGAGGAGCAAGCTTTCTAGA
CCAT
BO16651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56i-RA | 423 | CG30448-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Obp56i-RB | 390 | CG30448-PB | 28..387 | 77..436 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56i-RA | 569 | CG30448-RA | 29..448 | 17..436 | 2100 | 100 | Plus |
Obp56i-RB | 938 | CG30448-RB | 458..817 | 77..436 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19868234..19868593 | 77..436 | 1800 | 100 | Plus |
2R | 25286936 | 2R | 19868116..19868178 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:21:05 has no hits.
BO16651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:18 Download gff for
BO16651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:22 Download gff for
BO16651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:31 Download gff for
BO16651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 29..448 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:18 Download gff for
BO16651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:54 Download gff for
BO16651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56i-RA | 29..448 | 17..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:54 Download gff for
BO16651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19868116..19868175 | 17..76 | 100 | -> | Plus |
2R | 19868234..19868593 | 77..438 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:31 Download gff for
BO16651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15755621..15755680 | 17..76 | 100 | -> | Plus |
arm_2R | 15755739..15756098 | 77..438 | 99 | | Plus |
BO16651.pep Sequence
Translation from 16 to 454
> BO16651.pep
MHFFTCCALLLVVVTLPTCFVQAGPIKDQCMAAAGITAQDVANRHETDDP
GHSVKCFFRCFLENIGIIADNQIIPGAFDRVLGHIVTAEAVERMEATCNM
IKSETSHDESCEFAWQISECYEGVRLSDVKKGQRTRNHRGASFLDH
BO16651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56i-PA | 140 | CG30448-PA | 1..140 | 1..140 | 753 | 100 | Plus |
Obp56i-PB | 129 | CG30448-PB | 1..129 | 12..140 | 644 | 94.6 | Plus |
Obp56d-PB | 131 | CG11218-PB | 35..124 | 19..121 | 136 | 32 | Plus |
Obp56d-PA | 131 | CG11218-PA | 35..124 | 19..121 | 136 | 32 | Plus |