Clone BO16651 Report

Search the DGRC for BO16651

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptObp56i-RA
Protein status:BO16651.pep: validated full length
Sequenced Size:454

Clone Sequence Records

BO16651.3prime Sequence

452 bp (452 high quality bases) assembled on 2006-10-13

> BO16651.3prime
ATGGTCTAGAAAGCTTGCTCCTCTGTGATTTCGAGTTCTTTGGCCCTTCT
TAACATCTGATAATCTTACTCCTTCGTAGCACTCGGAGATTTGCCAGGCG
AATTCACAAGACTCGTCATGGGATGTCTCGCTCTTAATCATATTACACGT
CGCTTCCATTCGCTCTACGGCTTCCGCGGTAACTATATGGCCTAGAACTC
GGTCAAAAGCACCGGGTATTATCTGGTTATCGGCGATAATGCCAATGTTT
TCTAGAAAACAGCGGAAAAAGCACTTGACACTATGGCCAGGGTCGTCGGT
CTCATGACGATTCGCAACATCTTGTGCTGTGATGCCCGCCGCCGCCATGC
ATTGATCCTTAATGGGACCTGCTTGTACGAAACATGTTGGTAATGTAACG
ACGACTAACAATAATGCACAGCAGGTGAAAAAATGCATGTCGACTGATAA
CT

BO16651.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30448-PA 423 Obp56i-RA 1..420 438..19 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-RA 569 CG30448-RA 29..448 438..19 2100 100 Minus
Obp56i-RB 938 CG30448-RB 458..817 378..19 1800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19868234..19868593 378..19 1800 100 Minus
2R 25286936 2R 19868116..19868178 438..376 315 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:33:32 has no hits.

BO16651.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:32 Download gff for BO16651.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30448-PA 1..423 15..438 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:54 Download gff for BO16651.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..453 14..438 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:26 Download gff for BO16651.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..453 14..438 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:26 Download gff for BO16651.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19868234..19868598 14..378 99   Minus
2R 19868116..19868175 379..438 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:54 Download gff for BO16651.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15755621..15755680 379..438 100 -> Minus
arm_2R 15755739..15756103 14..378 99   Minus

BO16651.5prime Sequence

452 bp (452 high quality bases) assembled on 2006-10-13

> BO16651.5prime
GAAGTTATCAGTCGACATGCATTTTTTCACCTGCTGTGCATTATTGTTAG
TCGTCGTTACATTACCAACATGTTTCGTACAAGCAGGTCCCATTAAGGAT
CAATGCATGGCGGCGGCGGGCATCACAGCACAAGATGTTGCGAATCGTCA
TGAGACCGACGACCCTGGCCATAGTGTCAAGTGCTTTTTCCGCTGTTTTC
TAGAAAACATTGGCATTATCGCCGATAACCAGATAATACCCGGTGCTTTT
GACCGAGTTCTAGGCCATATAGTTACCGCGGAAGCCGTAGAGCGAATGGA
AGCGACGTGTAATATGATTAAGAGCGAGACATCCCATGACGAGTCTTGTG
AATTCGCCTGGCAAATCTCCGAGTGCTACGAAGGAGTAAGATTATCAGAT
GTTAAGAAGGGCCAAAGAACTCGAAATCACAGAGGAGCAAGCTTTCTAGA
CC

BO16651.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30448-PA 423 Obp56i-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-RA 569 CG30448-RA 29..448 17..436 2100 100 Plus
Obp56i-RB 938 CG30448-RB 458..817 77..436 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19868234..19868593 77..436 1800 100 Plus
2R 25286936 2R 19868116..19868178 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:40:48 has no hits.

BO16651.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:32 Download gff for BO16651.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30448-PA 1..423 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:12 Download gff for BO16651.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..453 17..441 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:02 Download gff for BO16651.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..453 17..441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:02 Download gff for BO16651.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19868116..19868175 17..76 100 -> Plus
2R 19868234..19868598 77..441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:12 Download gff for BO16651.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15755621..15755680 17..76 100 -> Plus
arm_2R 15755739..15756103 77..441 99   Plus

BO16651.complete Sequence

454 bp assembled on 2006-10-11

GenBank Submission: FJ633876

> BO16651.complete
GAAGTTATCAGTCGACATGCATTTTTTCACCTGCTGTGCATTATTGTTAG
TCGTCGTTACATTACCAACATGTTTCGTACAAGCAGGTCCCATTAAGGAT
CAATGCATGGCGGCGGCGGGCATCACAGCACAAGATGTTGCGAATCGTCA
TGAGACCGACGACCCTGGCCATAGTGTCAAGTGCTTTTTCCGCTGTTTTC
TAGAAAACATTGGCATTATCGCCGATAACCAGATAATACCCGGTGCTTTT
GACCGAGTTCTAGGCCATATAGTTACCGCGGAAGCCGTAGAGCGAATGGA
AGCGACGTGTAATATGATTAAGAGCGAGACATCCCATGACGAGTCTTGTG
AATTCGCCTGGCAAATCTCCGAGTGCTACGAAGGAGTAAGATTATCAGAT
GTTAAGAAGGGCCAAAGAACTCGAAATCACAGAGGAGCAAGCTTTCTAGA
CCAT

BO16651.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-RA 423 CG30448-PA 1..420 17..436 2100 100 Plus
Obp56i-RB 390 CG30448-PB 28..387 77..436 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-RA 569 CG30448-RA 29..448 17..436 2100 100 Plus
Obp56i-RB 938 CG30448-RB 458..817 77..436 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19868234..19868593 77..436 1800 100 Plus
2R 25286936 2R 19868116..19868178 17..79 315 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:21:05 has no hits.

BO16651.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:18 Download gff for BO16651.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 1..423 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:22 Download gff for BO16651.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 1..423 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:31 Download gff for BO16651.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..448 17..438 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:18 Download gff for BO16651.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 1..423 17..440 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:54 Download gff for BO16651.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56i-RA 29..448 17..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:54 Download gff for BO16651.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19868116..19868175 17..76 100 -> Plus
2R 19868234..19868593 77..438 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:31 Download gff for BO16651.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15755621..15755680 17..76 100 -> Plus
arm_2R 15755739..15756098 77..438 99   Plus

BO16651.pep Sequence

Translation from 16 to 454

> BO16651.pep
MHFFTCCALLLVVVTLPTCFVQAGPIKDQCMAAAGITAQDVANRHETDDP
GHSVKCFFRCFLENIGIIADNQIIPGAFDRVLGHIVTAEAVERMEATCNM
IKSETSHDESCEFAWQISECYEGVRLSDVKKGQRTRNHRGASFLDH

BO16651.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56i-PA 140 CG30448-PA 1..140 1..140 753 100 Plus
Obp56i-PB 129 CG30448-PB 1..129 12..140 644 94.6 Plus
Obp56d-PB 131 CG11218-PB 35..124 19..121 136 32 Plus
Obp56d-PA 131 CG11218-PA 35..124 19..121 136 32 Plus