Clone Sequence Records
BO16653.3prime Sequence
551 bp (551 high quality bases) assembled on 2006-10-13
> BO16653.3prime
ATGGTCTAGAAAGCTTGCGTTGGACACCAATCCCAAGTAGTCGTCCATCA
AAGTGCCAATTGCAAAAATTCCAGTGGCATCTACTCGTGTGCCCACAATC
TTCAGCCGAATCTTATCCTCTCCGGAGATAACCACATCCTCATCTTTACT
CTTATAGCAGGGCGGATTCCCATTCGGGCAGAACTGCATGTCGGCGGGAA
TAGAATGATGCGAAATGAAGCAGGACAGCGGGCCGATCTCTGCAAACATG
CCCACTTTGTTGATCTGCTTGACCACTGCGTCCAGAACTTCGCCCTTAAA
TGGCCGAAAGACGATAGCTTTGTACTTGACCGGATACACCACAAATCCCT
GGCCCGGCTGGATGACACCCGATCCGATTTGATCTATCGTCGTCACCGCT
ATCACGAATCCGTACTTTCCCGTGCAGGTGCCCTCCACTTCGGAGTAGAG
TTTCTGCTTCACGGTCTCCAGCAGTTGCGGGCCAAAGTAACGTGGATGAA
GCAGAATCTCTTGCTCCAGCGATATGTGGTAAAACATGTCGACTGATAAC
T
BO16653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31155-PA | 522 | Rpb7-RA | 1..519 | 537..19 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 759 | CG31155-RA | 89..607 | 537..19 | 2595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15222703..15223023 | 205..525 | 1605 | 100 | Plus |
3R | 32079331 | 3R | 15222508..15222645 | 67..204 | 690 | 100 | Plus |
3R | 32079331 | 3R | 15222403..15222450 | 19..66 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:45:45 has no hits.
BO16653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:34 Download gff for
BO16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31155-PA | 1..522 | 15..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:42 Download gff for
BO16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..613 | 11..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:02 Download gff for
BO16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..613 | 11..537 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:02 Download gff for
BO16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15222397..15222450 | 11..66 | 92 | <- | Plus |
3R | 15222508..15222645 | 67..204 | 100 | <- | Plus |
3R | 15222703..15223023 | 205..525 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:42 Download gff for
BO16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11048119..11048172 | 11..66 | 92 | <- | Plus |
arm_3R | 11048230..11048367 | 67..204 | 100 | <- | Plus |
arm_3R | 11048425..11048745 | 205..525 | 100 | <- | Plus |
BO16653.5prime Sequence
551 bp (551 high quality bases) assembled on 2006-10-13
> BO16653.5prime
GAAGTTATCAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTC
TGCTTCATCCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAG
AAACTCTACTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGT
GATAGCGGTGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGG
GCCAGGGATTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGG
CCATTTAAGGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGT
GGGCATGTTTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATT
CTATTCCCGCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTAT
AAGAGTAAAGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCT
GAAGATTGTGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCA
CTTTGATGGACGACTACTTGGGATTGGTGTCCAACGCAAGCTTTCTAGAC
C
BO16653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31155-PA | 522 | Rpb7-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 759 | CG31155-RA | 89..607 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15222703..15223023 | 349..29 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 15222508..15222645 | 487..350 | 690 | 100 | Minus |
3R | 32079331 | 3R | 15222403..15222450 | 535..488 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:42:11 has no hits.
BO16653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:35 Download gff for
BO16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31155-PA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:16 Download gff for
BO16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..613 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:17 Download gff for
BO16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 89..613 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:17 Download gff for
BO16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15222397..15222450 | 488..543 | 92 | <- | Minus |
3R | 15222508..15222645 | 350..487 | 100 | <- | Minus |
3R | 15222703..15223023 | 29..349 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:16 Download gff for
BO16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11048119..11048172 | 488..543 | 92 | <- | Minus |
arm_3R | 11048230..11048367 | 350..487 | 100 | <- | Minus |
arm_3R | 11048425..11048745 | 29..349 | 100 | <- | Minus |
BO16653.complete Sequence
553 bp assembled on 2006-10-11
GenBank Submission: FJ633877
> BO16653.complete
GAAGTTATCAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTC
TGCTTCATCCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAG
AAACTCTACTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGT
GATAGCGGTGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGG
GCCAGGGATTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGG
CCATTTAAGGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGT
GGGCATGTTTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATT
CTATTCCCGCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTAT
AAGAGTAAAGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCT
GAAGATTGTGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCA
CTTTGATGGACGACTACTTGGGATTGGTGTCCAACGCAAGCTTTCTAGAC
CAT
BO16653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 522 | CG31155-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-RA | 759 | CG31155-RA | 89..607 | 17..535 | 2595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15222703..15223023 | 349..29 | 1605 | 100 | Minus |
3R | 32079331 | 3R | 15222508..15222645 | 487..350 | 690 | 100 | Minus |
3R | 32079331 | 3R | 15222403..15222450 | 535..488 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:20:19 has no hits.
BO16653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:21 Download gff for
BO16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 1..522 | 17..539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:24 Download gff for
BO16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 36..560 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:35 Download gff for
BO16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 96..607 | 24..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:21 Download gff for
BO16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 36..560 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:15 Download gff for
BO16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpb7-RA | 96..607 | 24..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:15 Download gff for
BO16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15222401..15222450 | 488..537 | 96 | <- | Minus |
3R | 15222508..15222645 | 350..487 | 100 | <- | Minus |
3R | 15222703..15223025 | 24..349 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:35 Download gff for
BO16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11048123..11048172 | 488..537 | 96 | <- | Minus |
arm_3R | 11048230..11048367 | 350..487 | 100 | <- | Minus |
arm_3R | 11048425..11048747 | 24..349 | 98 | | Minus |
BO16653.pep Sequence
Translation from 16 to 553
> BO16653.pep
MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTT
IDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAE
IGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGT
RVDATGIFAIGTLMDDYLGLVSNASFLDH
BO16653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpb7-PA | 173 | CG31155-PA | 1..173 | 1..173 | 907 | 100 | Plus |