Clone BO16653 Report

Search the DGRC for BO16653

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptRpb7-RA
Protein status:BO16653.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO16653.3prime Sequence

551 bp (551 high quality bases) assembled on 2006-10-13

> BO16653.3prime
ATGGTCTAGAAAGCTTGCGTTGGACACCAATCCCAAGTAGTCGTCCATCA
AAGTGCCAATTGCAAAAATTCCAGTGGCATCTACTCGTGTGCCCACAATC
TTCAGCCGAATCTTATCCTCTCCGGAGATAACCACATCCTCATCTTTACT
CTTATAGCAGGGCGGATTCCCATTCGGGCAGAACTGCATGTCGGCGGGAA
TAGAATGATGCGAAATGAAGCAGGACAGCGGGCCGATCTCTGCAAACATG
CCCACTTTGTTGATCTGCTTGACCACTGCGTCCAGAACTTCGCCCTTAAA
TGGCCGAAAGACGATAGCTTTGTACTTGACCGGATACACCACAAATCCCT
GGCCCGGCTGGATGACACCCGATCCGATTTGATCTATCGTCGTCACCGCT
ATCACGAATCCGTACTTTCCCGTGCAGGTGCCCTCCACTTCGGAGTAGAG
TTTCTGCTTCACGGTCTCCAGCAGTTGCGGGCCAAAGTAACGTGGATGAA
GCAGAATCTCTTGCTCCAGCGATATGTGGTAAAACATGTCGACTGATAAC
T

BO16653.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31155-PA 522 Rpb7-RA 1..519 537..19 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-RA 759 CG31155-RA 89..607 537..19 2595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15222703..15223023 205..525 1605 100 Plus
3R 32079331 3R 15222508..15222645 67..204 690 100 Plus
3R 32079331 3R 15222403..15222450 19..66 240 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:45:45 has no hits.

BO16653.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:34 Download gff for BO16653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31155-PA 1..522 15..537 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:42 Download gff for BO16653.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 89..613 11..537 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:02 Download gff for BO16653.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 89..613 11..537 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:02 Download gff for BO16653.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15222397..15222450 11..66 92 <- Plus
3R 15222508..15222645 67..204 100 <- Plus
3R 15222703..15223023 205..525 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:42 Download gff for BO16653.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11048119..11048172 11..66 92 <- Plus
arm_3R 11048230..11048367 67..204 100 <- Plus
arm_3R 11048425..11048745 205..525 100 <- Plus

BO16653.5prime Sequence

551 bp (551 high quality bases) assembled on 2006-10-13

> BO16653.5prime
GAAGTTATCAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTC
TGCTTCATCCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAG
AAACTCTACTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGT
GATAGCGGTGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGG
GCCAGGGATTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGG
CCATTTAAGGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGT
GGGCATGTTTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATT
CTATTCCCGCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTAT
AAGAGTAAAGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCT
GAAGATTGTGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCA
CTTTGATGGACGACTACTTGGGATTGGTGTCCAACGCAAGCTTTCTAGAC
C

BO16653.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31155-PA 522 Rpb7-RA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-RA 759 CG31155-RA 89..607 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15222703..15223023 349..29 1605 100 Minus
3R 32079331 3R 15222508..15222645 487..350 690 100 Minus
3R 32079331 3R 15222403..15222450 535..488 240 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:42:11 has no hits.

BO16653.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:35 Download gff for BO16653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31155-PA 1..522 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:16 Download gff for BO16653.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 89..613 17..543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:17 Download gff for BO16653.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 89..613 17..543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:17 Download gff for BO16653.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15222397..15222450 488..543 92 <- Minus
3R 15222508..15222645 350..487 100 <- Minus
3R 15222703..15223023 29..349 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:16 Download gff for BO16653.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11048119..11048172 488..543 92 <- Minus
arm_3R 11048230..11048367 350..487 100 <- Minus
arm_3R 11048425..11048745 29..349 100 <- Minus

BO16653.complete Sequence

553 bp assembled on 2006-10-11

GenBank Submission: FJ633877

> BO16653.complete
GAAGTTATCAGTCGACATGTTTTACCACATATCGCTGGAGCAAGAGATTC
TGCTTCATCCACGTTACTTTGGCCCGCAACTGCTGGAGACCGTGAAGCAG
AAACTCTACTCCGAAGTGGAGGGCACCTGCACGGGAAAGTACGGATTCGT
GATAGCGGTGACGACGATAGATCAAATCGGATCGGGTGTCATCCAGCCGG
GCCAGGGATTTGTGGTGTATCCGGTCAAGTACAAAGCTATCGTCTTTCGG
CCATTTAAGGGCGAAGTTCTGGACGCAGTGGTCAAGCAGATCAACAAAGT
GGGCATGTTTGCAGAGATCGGCCCGCTGTCCTGCTTCATTTCGCATCATT
CTATTCCCGCCGACATGCAGTTCTGCCCGAATGGGAATCCGCCCTGCTAT
AAGAGTAAAGATGAGGATGTGGTTATCTCCGGAGAGGATAAGATTCGGCT
GAAGATTGTGGGCACACGAGTAGATGCCACTGGAATTTTTGCAATTGGCA
CTTTGATGGACGACTACTTGGGATTGGTGTCCAACGCAAGCTTTCTAGAC
CAT

BO16653.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-RA 522 CG31155-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-RA 759 CG31155-RA 89..607 17..535 2595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15222703..15223023 349..29 1605 100 Minus
3R 32079331 3R 15222508..15222645 487..350 690 100 Minus
3R 32079331 3R 15222403..15222450 535..488 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:20:19 has no hits.

BO16653.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:21 Download gff for BO16653.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 1..522 17..539 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:24 Download gff for BO16653.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 36..560 17..543 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:35 Download gff for BO16653.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 96..607 24..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:21 Download gff for BO16653.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 36..560 17..543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:15 Download gff for BO16653.complete
Subject Subject Range Query Range Percent Splice Strand
Rpb7-RA 96..607 24..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:15 Download gff for BO16653.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15222401..15222450 488..537 96 <- Minus
3R 15222508..15222645 350..487 100 <- Minus
3R 15222703..15223025 24..349 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:35 Download gff for BO16653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11048123..11048172 488..537 96 <- Minus
arm_3R 11048230..11048367 350..487 100 <- Minus
arm_3R 11048425..11048747 24..349 98   Minus

BO16653.pep Sequence

Translation from 16 to 553

> BO16653.pep
MFYHISLEQEILLHPRYFGPQLLETVKQKLYSEVEGTCTGKYGFVIAVTT
IDQIGSGVIQPGQGFVVYPVKYKAIVFRPFKGEVLDAVVKQINKVGMFAE
IGPLSCFISHHSIPADMQFCPNGNPPCYKSKDEDVVISGEDKIRLKIVGT
RVDATGIFAIGTLMDDYLGLVSNASFLDH

BO16653.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rpb7-PA 173 CG31155-PA 1..173 1..173 907 100 Plus