Clone Sequence Records
BO16655.3prime Sequence
680 bp (637 high quality bases) assembled on 2006-10-13
> BO16655.3prime
ATGGTCTAGAAAGCTTGCCTCGATAGCGTCCACAAGCTTGCACAACATGC
GATCGTGCTGGTAACTGGGATCATTCTTGGCCGCCGCATTCGCCTCCAAC
GGATCCACCTCCGTCTTAATCTTTGCTCCGCCGCTATCGTCGTCATCATC
TAGAACCGGCAGAGCTGAGAAGGCGGTATTAACGATCTCGCGCACACGTT
CCAAGTGCTTTTGGAAACGGGCGGCGGTCTCAACGCGCTGCCGCTTCTGC
ATTTCCATCATGACGCGCAGCGTTTCCCTCGCCTGATGTGGGCGAAATTC
ATTGAGGAGGTGATGCATGTTGACGAACAGCAGACTGATATCGTCAATCT
TTTCCGTGCGCCGCGGGCTGTCAGGATTCAGGATAAGAAAGTCAATGAGA
TCTAGGAAGTTGACCAAGAGGGAGTGGTTAAGCTTCTTGAGCTCCTTGCG
CCGATCGAAATGGATGGGGATCAGTCGCTTAATATTCTGGGACTCCAAGC
TGCGGATCATCTCGTCGTTGTTGTACTGGATGCCAAACATGCTATAGACT
TCGTGCTGCGCCGGCGGCGGCGGTGGGCGTGGCGCTCGGTTGCGGCGGAT
ATTCTCGTCCGTGTAATTGGCGATGTACCGCTCCGGCGGCATCGGCAGGC
TGGAAACCTGGGTCTCCTGGTTGGACATGT
BO16655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31390-PA | 663 | MED7-RA | 1..660 | 678..19 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED7-RA | 901 | CG31390-RA | 100..759 | 678..19 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10760213..10760544 | 19..350 | 1660 | 100 | Plus |
| 3R | 32079331 | 3R | 10760604..10760933 | 349..678 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:06:20 has no hits.
BO16655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:37 Download gff for
BO16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31390-PA | 1..663 | 15..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:04 Download gff for
BO16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 99..765 | 12..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:37 Download gff for
BO16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 99..765 | 12..680 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:37 Download gff for
BO16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10760207..10760542 | 12..348 | 99 | <- | Plus |
| 3R | 10760604..10760934 | 349..680 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:04 Download gff for
BO16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6585929..6586264 | 12..348 | 99 | <- | Plus |
| arm_3R | 6586326..6586656 | 349..680 | 99 | | Plus |
BO16655.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-10-13
> BO16655.5prime
GAAGTTATCAGTCGACATGTCCAACCAGGAGACCCAGGTTTCCAGCCTGC
CGATGCCGCCGGAGCGGTACATCGCCAATTACACGGACGAGAATATCCGC
CGCAACCGAGCGCCACGCCCACCGCCGCCGCCGGCGCAGCACGAAGTCTA
TAGCATGTTTGGCATCCAGTACAACAACGACGAGATGATCCGCAGCTTGG
AGTCCCAGAATATTAAGCGACTGATCCCCATCCATTTCGATCGGCGCAAG
GAGCTCAAGAAGCTTAACCACTCCCTCTTGGTCAACTTCCTAGATCTCAT
TGACTTTCTTATCCTGAATCCTGACAGCCCGCGGCGCACGGAAAAGATTG
ACGATATCAGTCTGCTGTTCGTCAACATGCATCACCTCCTCAATGAATTT
CGCCCACATCAGGCGAGGGAAACGCTGCGCGTCATGATGGAAATGCAGAA
GCGGCAGCGCGTTGAGACCGCCGCCCGTTTCCAAAAGCACTTGGAACGTG
TGCGCGAGATCGTTAATACCGCCTTCTCAGCTCTGCCGGTTCTAGATGAT
GACGACGATAGCGGCGGAGCANAGATTAAGACGGAGGTGGATCCGTTGGA
GGCGAATGCGGCGGCCAAGAATGATCCCAGTTACCAGCACGATCGCATGT
TGTGCAAGCTTGTGGACGCTATCGAGGCAAGCTTTC
BO16655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31390-PA | 663 | MED7-RA | 1..660 | 17..676 | 3281 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED7-RA | 901 | CG31390-RA | 100..759 | 17..676 | 3289 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10760604..10760933 | 346..17 | 1650 | 100 | Minus |
| 3R | 32079331 | 3R | 10760213..10760544 | 676..345 | 1649 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:33:42 has no hits.
BO16655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:38 Download gff for
BO16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31390-PA | 1..663 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:56 Download gff for
BO16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 95..765 | 8..686 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:27 Download gff for
BO16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 95..765 | 8..686 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:27 Download gff for
BO16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10760204..10760542 | 347..686 | 98 | <- | Minus |
| 3R | 10760604..10760938 | 8..346 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:56 Download gff for
BO16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6585926..6586264 | 347..686 | 98 | <- | Minus |
| arm_3R | 6586326..6586660 | 8..346 | 98 | | Minus |
BO16655.complete Sequence
694 bp assembled on 2006-10-11
GenBank Submission: FJ633878
> BO16655.complete
GAAGTTATCAGTCGACATGTCCAACCAGGAGACCCAGGTTTCCAGCCTGC
CGATGCCGCCGGAGCGGTACATCGCCAATTACACGGACGAGAATATCCGC
CGCAACCGAGCGCCACGCCCACCGCCGCCGCCGGCGCAGCACGAAGTCTA
TAGCATGTTTGGCATCCAGTACAACAACGACGAGATGATCCGCAGCTTGG
AGTCCCAGAATATTAAGCGACTGATCCCCATCCATTTCGATCGGCGCAAG
GAGCTCAAGAAGCTTAACCACTCCCTCTTGGTCAACTTCCTAGATCTCAT
TGACTTTCTTATCCTGAATCCTGACAGCCCGCGGCGCACGGAAAAGATTG
ACGATATCAGTCTGCTGTTCGTCAACATGCATCACCTCCTCAATGAATTT
CGCCCACATCAGGCGAGGGAAACGCTGCGCGTCATGATGGAAATGCAGAA
GCGGCAGCGCGTTGAGACCGCCGCCCGTTTCCAAAAGCACTTGGAACGTG
TGCGCGAGATCGTTAATACCGCCTTCTCAGCTCTGCCGGTTCTAGATGAT
GACGACGATAGCGGCGGAGCAAAGATTAAGACGGAGGTGGATCCGTTGGA
GGCGAATGCGGCGGCCAAGAATGATCCCAGTTACCAGCACGATCGCATGT
TGTGCAAGCTTGTGGACGCTATCGAGGCAAGCTTTCTAGACCAT
BO16655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED7-RA | 663 | CG31390-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED7-RA | 901 | CG31390-RA | 100..759 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10760213..10760544 | 676..345 | 1660 | 100 | Minus |
| 3R | 32079331 | 3R | 10760604..10760933 | 346..17 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:35:05 has no hits.
BO16655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:23 Download gff for
BO16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 1..663 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:26 Download gff for
BO16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:47 Download gff for
BO16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 100..759 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:23 Download gff for
BO16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 1..666 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:34 Download gff for
BO16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED7-RA | 100..759 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:34 Download gff for
BO16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10760211..10760542 | 347..678 | 99 | <- | Minus |
| 3R | 10760604..10760933 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:47 Download gff for
BO16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6585933..6586264 | 347..678 | 99 | <- | Minus |
| arm_3R | 6586326..6586655 | 17..346 | 100 | | Minus |
BO16655.pep Sequence
Translation from 16 to 694
> BO16655.pep
MSNQETQVSSLPMPPERYIANYTDENIRRNRAPRPPPPPAQHEVYSMFGI
QYNNDEMIRSLESQNIKRLIPIHFDRRKELKKLNHSLLVNFLDLIDFLIL
NPDSPRRTEKIDDISLLFVNMHHLLNEFRPHQARETLRVMMEMQKRQRVE
TAARFQKHLERVREIVNTAFSALPVLDDDDDSGGAKIKTEVDPLEANAAA
KNDPSYQHDRMLCKLVDAIEASFLDH
BO16655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED7-PA | 220 | CG31390-PA | 1..220 | 1..220 | 1140 | 100 | Plus |
