Clone Sequence Records
BO16656.3prime Sequence
419 bp (419 high quality bases) assembled on 2006-10-13
> BO16656.3prime
ATGGTCTAGAAAGCTTGCTCCAGTAAAGAGCCTGGAAAGGCTGCCACCGA
GTTCTTCAAAGAATCCAACTGCAAGGCCTTGTGCCACTGGAGATAGGATT
TTTCCGACGTACTTGGTCTTTCGCCCCCCCTGACTCGGAACTCCATCGAT
TAGAATTTCATCAGTATGCTCCTGAATGGATCTTTCAATCTTTTCCCTTT
GTTCAGGGGACAACGTGGGAGTCAGGCGCCTAAAGATATCGAGCAGCTCT
TGGGTTCGATTGATCTTCGATTCGGCGTCGTTGGAGGTTCGAATAATTTC
TGCAACCCTAAGGCTGTCAGATTCCCTTTCCTCGTCAGAATAGCCCAAGC
AAAAAGGACTAATCAGGAGCAGGGCAAGGCATAGTAGAGAAATGGAGGCA
TTCATGTCGACTGATAACT
BO16656.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31508-PA | 390 | TotC-RA | 1..387 | 405..19 | 1935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-RA | 530 | CG31508-RA | 45..431 | 405..19 | 1935 | 100 | Minus |
TotA-RA | 579 | CG31509-RA | 66..395 | 381..52 | 390 | 75.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20873118..20873481 | 382..19 | 1820 | 100 | Minus |
3R | 32079331 | 3R | 20871187..20871516 | 381..52 | 390 | 74.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:50:46 has no hits.
BO16656.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:39 Download gff for
BO16656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31508-PA | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:42 Download gff for
BO16656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..434 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:05 Download gff for
BO16656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..434 | 15..405 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:05 Download gff for
BO16656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873032..20873054 | 383..405 | 100 | -> | Minus |
3R | 20873118..20873484 | 15..382 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:42 Download gff for
BO16656.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16698840..16699206 | 15..382 | 99 | | Minus |
arm_3R | 16698754..16698776 | 383..405 | 100 | -> | Minus |
BO16656.5prime Sequence
419 bp (419 high quality bases) assembled on 2006-10-13
> BO16656.5prime
GAAGTTATCAGTCGACATGAATGCCTCCATTTCTCTACTATGCCTTGCCC
TGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACGAGGAAAGGGAA
TCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCCAACGACGCCGA
ATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTTTAGGCGCCTGA
CTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAAGATCCATTCAG
GAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGTCAGGGGGGGCG
AAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGCACAAGGCCTTG
CAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCAGGCTCTTTACT
GGAGCAAGCTTTCTAGACC
BO16656.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31508-PA | 390 | TotC-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-RA | 530 | CG31508-RA | 45..431 | 17..403 | 1935 | 100 | Plus |
TotA-RA | 579 | CG31509-RA | 66..395 | 41..370 | 390 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20873118..20873481 | 40..403 | 1820 | 100 | Plus |
3R | 32079331 | 3R | 20871187..20871516 | 41..370 | 390 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:33:54 has no hits.
BO16656.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:40 Download gff for
BO16656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31508-PA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:48 Download gff for
BO16656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..434 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:57 Download gff for
BO16656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..434 | 17..407 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:57 Download gff for
BO16656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873032..20873054 | 17..39 | 100 | -> | Plus |
3R | 20873118..20873484 | 40..407 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:48 Download gff for
BO16656.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16698754..16698776 | 17..39 | 100 | -> | Plus |
arm_3R | 16698840..16699206 | 40..407 | 99 | | Plus |
BO16656.complete Sequence
421 bp assembled on 2006-10-11
GenBank Submission: FJ633879
> BO16656.complete
GAAGTTATCAGTCGACATGAATGCCTCCATTTCTCTACTATGCCTTGCCC
TGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACGAGGAAAGGGAA
TCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCCAACGACGCCGA
ATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTTTAGGCGCCTGA
CTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAAGATCCATTCAG
GAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGTCAGGGGGGGCG
AAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGCACAAGGCCTTG
CAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCAGGCTCTTTACT
GGAGCAAGCTTTCTAGACCAT
BO16656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-RA | 390 | CG31508-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
TotA-RA | 390 | CG31509-PA | 25..354 | 41..370 | 390 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-RA | 530 | CG31508-RA | 45..431 | 17..403 | 1935 | 100 | Plus |
TotA-RA | 579 | CG31509-RA | 66..395 | 41..370 | 390 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20873118..20873481 | 40..403 | 1820 | 100 | Plus |
3R | 32079331 | 3R | 20871187..20871516 | 41..370 | 390 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:24:27 has no hits.
BO16656.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:25 Download gff for
BO16656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:27 Download gff for
BO16656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..434 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:06 Download gff for
BO16656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..431 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:25 Download gff for
BO16656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..434 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:47 Download gff for
BO16656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotC-RA | 45..431 | 17..405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:47 Download gff for
BO16656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20873032..20873054 | 17..39 | 100 | -> | Plus |
3R | 20873118..20873481 | 40..405 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:06 Download gff for
BO16656.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16698754..16698776 | 17..39 | 100 | -> | Plus |
arm_3R | 16698840..16699203 | 40..405 | 99 | | Plus |
BO16656.pep Sequence
Translation from 16 to 421
> BO16656.pep
MNASISLLCLALLLISPFCLGYSDEERESDSLRVAEIIRTSNDAESKINR
TQELLDIFRRLTPTLSPEQREKIERSIQEHTDEILIDGVPSQGGRKTKYV
GKILSPVAQGLAVGFFEELGGSLSRLFTGASFLDH
BO16656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotC-PA | 129 | CG31508-PA | 1..129 | 1..129 | 640 | 100 | Plus |
TotA-PA | 129 | CG31509-PA | 1..129 | 1..129 | 461 | 65.9 | Plus |
TotB-PA | 138 | CG5609-PA | 1..127 | 1..128 | 336 | 53.1 | Plus |