Clone BO16656 Report

Search the DGRC for BO16656

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptTotC-RA
Protein status:BO16656.pep: validated full length
Sequenced Size:421

Clone Sequence Records

BO16656.3prime Sequence

419 bp (419 high quality bases) assembled on 2006-10-13

> BO16656.3prime
ATGGTCTAGAAAGCTTGCTCCAGTAAAGAGCCTGGAAAGGCTGCCACCGA
GTTCTTCAAAGAATCCAACTGCAAGGCCTTGTGCCACTGGAGATAGGATT
TTTCCGACGTACTTGGTCTTTCGCCCCCCCTGACTCGGAACTCCATCGAT
TAGAATTTCATCAGTATGCTCCTGAATGGATCTTTCAATCTTTTCCCTTT
GTTCAGGGGACAACGTGGGAGTCAGGCGCCTAAAGATATCGAGCAGCTCT
TGGGTTCGATTGATCTTCGATTCGGCGTCGTTGGAGGTTCGAATAATTTC
TGCAACCCTAAGGCTGTCAGATTCCCTTTCCTCGTCAGAATAGCCCAAGC
AAAAAGGACTAATCAGGAGCAGGGCAAGGCATAGTAGAGAAATGGAGGCA
TTCATGTCGACTGATAACT

BO16656.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31508-PA 390 TotC-RA 1..387 405..19 1935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 530 CG31508-RA 45..431 405..19 1935 100 Minus
TotA-RA 579 CG31509-RA 66..395 381..52 390 75.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20873118..20873481 382..19 1820 100 Minus
3R 32079331 3R 20871187..20871516 381..52 390 74.5 Minus
Blast to na_te.dros performed on 2015-02-12 03:50:46 has no hits.

BO16656.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:39 Download gff for BO16656.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31508-PA 1..390 15..405 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:42 Download gff for BO16656.3prime
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..434 15..405 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:57:05 Download gff for BO16656.3prime
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..434 15..405 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:57:05 Download gff for BO16656.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20873032..20873054 383..405 100 -> Minus
3R 20873118..20873484 15..382 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:42 Download gff for BO16656.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16698840..16699206 15..382 99   Minus
arm_3R 16698754..16698776 383..405 100 -> Minus

BO16656.5prime Sequence

419 bp (419 high quality bases) assembled on 2006-10-13

> BO16656.5prime
GAAGTTATCAGTCGACATGAATGCCTCCATTTCTCTACTATGCCTTGCCC
TGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACGAGGAAAGGGAA
TCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCCAACGACGCCGA
ATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTTTAGGCGCCTGA
CTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAAGATCCATTCAG
GAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGTCAGGGGGGGCG
AAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGCACAAGGCCTTG
CAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCAGGCTCTTTACT
GGAGCAAGCTTTCTAGACC

BO16656.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31508-PA 390 TotC-RA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 530 CG31508-RA 45..431 17..403 1935 100 Plus
TotA-RA 579 CG31509-RA 66..395 41..370 390 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20873118..20873481 40..403 1820 100 Plus
3R 32079331 3R 20871187..20871516 41..370 390 74.5 Plus
Blast to na_te.dros performed on 2015-02-10 16:33:54 has no hits.

BO16656.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:40 Download gff for BO16656.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31508-PA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:48 Download gff for BO16656.5prime
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..434 17..407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:57 Download gff for BO16656.5prime
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..434 17..407 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:57 Download gff for BO16656.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20873032..20873054 17..39 100 -> Plus
3R 20873118..20873484 40..407 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:48 Download gff for BO16656.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16698754..16698776 17..39 100 -> Plus
arm_3R 16698840..16699206 40..407 99   Plus

BO16656.complete Sequence

421 bp assembled on 2006-10-11

GenBank Submission: FJ633879

> BO16656.complete
GAAGTTATCAGTCGACATGAATGCCTCCATTTCTCTACTATGCCTTGCCC
TGCTCCTGATTAGTCCTTTTTGCTTGGGCTATTCTGACGAGGAAAGGGAA
TCTGACAGCCTTAGGGTTGCAGAAATTATTCGAACCTCCAACGACGCCGA
ATCGAAGATCAATCGAACCCAAGAGCTGCTCGATATCTTTAGGCGCCTGA
CTCCCACGTTGTCCCCTGAACAAAGGGAAAAGATTGAAAGATCCATTCAG
GAGCATACTGATGAAATTCTAATCGATGGAGTTCCGAGTCAGGGGGGGCG
AAAGACCAAGTACGTCGGAAAAATCCTATCTCCAGTGGCACAAGGCCTTG
CAGTTGGATTCTTTGAAGAACTCGGTGGCAGCCTTTCCAGGCTCTTTACT
GGAGCAAGCTTTCTAGACCAT

BO16656.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 390 CG31508-PA 1..387 17..403 1935 100 Plus
TotA-RA 390 CG31509-PA 25..354 41..370 390 74.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-RA 530 CG31508-RA 45..431 17..403 1935 100 Plus
TotA-RA 579 CG31509-RA 66..395 41..370 390 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20873118..20873481 40..403 1820 100 Plus
3R 32079331 3R 20871187..20871516 41..370 390 74.5 Plus
Blast to na_te.dros performed on 2014-11-27 16:24:27 has no hits.

BO16656.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:25 Download gff for BO16656.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:27 Download gff for BO16656.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..434 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:06 Download gff for BO16656.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..431 17..405 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:25 Download gff for BO16656.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..434 17..407 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:47 Download gff for BO16656.complete
Subject Subject Range Query Range Percent Splice Strand
TotC-RA 45..431 17..405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:47 Download gff for BO16656.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20873032..20873054 17..39 100 -> Plus
3R 20873118..20873481 40..405 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:06 Download gff for BO16656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16698754..16698776 17..39 100 -> Plus
arm_3R 16698840..16699203 40..405 99   Plus

BO16656.pep Sequence

Translation from 16 to 421

> BO16656.pep
MNASISLLCLALLLISPFCLGYSDEERESDSLRVAEIIRTSNDAESKINR
TQELLDIFRRLTPTLSPEQREKIERSIQEHTDEILIDGVPSQGGRKTKYV
GKILSPVAQGLAVGFFEELGGSLSRLFTGASFLDH

BO16656.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
TotC-PA 129 CG31508-PA 1..129 1..129 640 100 Plus
TotA-PA 129 CG31509-PA 1..129 1..129 461 65.9 Plus
TotB-PA 138 CG5609-PA 1..127 1..128 336 53.1 Plus