Clone Sequence Records
BO16657.3prime Sequence
651 bp (540 high quality bases) assembled on 2006-10-13
> BO16657.3prime
ATGGTCTAGAAAGCTTGCCTGCTCTTCGTTGTCCTCCACTAGCTTATTCC
CATTTACTCGCTCCCAGCATTTGTACTCATGGTACATCCACGAGCACTTG
CTTAGCGCCACCTCCCGCTGAGTCCCACTTAGTCGACAGCCACTGTAGTC
AGCGCCAGAAGACTGATCCTCATTTCCGGAAGGCCCAAACGCCTGCTTCC
AGTTTTCCAGCCGCCAGTTTCCATCGGGATCGTAGAATCCCATGGCATCC
GCAAAGCACTGAAAGAGGCAGGGAATAGGTTCCTTTGACTTCAGCTTACT
GTACTGCAGCAGCTCCACGTTGGTGGCGTTCAGCTGGCGGGAACACTGTA
GCAGTGTGCTCAGGCTGGTGCCCGCATGCATCTCGGCCTGCTTCAGGCAC
CTGAGTCCCCGATAGGCGAAGCTGCAGCCATCGGACCCCATCCGGCGCAG
CTCGAATCTGCAGTAGTTATAGACATCGGCGCCCAGGTCCTCAGTCAGTT
GCTTGAGCCTCCACTTGTTTTCCTCCACGTCGAACCAGCCCTTTTCTCTG
GGCAAGCAGCGCATCAAGCAAGGTACCTCCTCCCGCGTCAAAGATGAATA
CCGTTCCAGCTTTCGAAGATCGCCAGCAATGCTCTCCGGCGAAATAGTTG
C
BO16657.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31557-PA | 738 | Obp83ef-RA | 111..735 | 643..19 | 3050 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 901 | CG31557-RA | 128..761 | 651..19 | 3085 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6109782..6110406 | 19..643 | 3080 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:26:44 has no hits.
BO16657.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:40 Download gff for
BO16657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31557-PA | 102..738 | 18..651 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:39 Download gff for
BO16657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 128..761 | 19..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:19 Download gff for
BO16657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 128..761 | 19..651 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:19 Download gff for
BO16657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6109782..6110415 | 19..651 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:39 Download gff for
BO16657.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1935504..1936137 | 19..651 | 99 | | Plus |
BO16657.5prime Sequence
574 bp (526 high quality bases) assembled on 2006-10-13
> BO16657.5prime
GAAGTTATCAGTCGACATGAGTTCCCCTCGTGCGGTTCTAGTCAGCCTGT
TCCTGATCTGCAGTCAGGCACTAGCTGACCTTTCTGGTGATGCCCAGACT
CTGGAAAAGTGCCTGCGGCAACTTAGTTCGCCGGAGAGCATTGCTGGCGA
TCTTCGAAAGCTGGAACGGTATTCATCTTGGACGCGGGAGGAGGTACCTT
GCCTGATGCGCTGCTTGGCCAGAGAAAAGGGCTGGTTCGACGTGGAGGAA
AACAAGTGGAGGCTCAAGCAACTGACTGAGGACCTGGGCGCCGATGTCTA
TAACTACTGCAGATTCGAGCTGCGCCGGATGGGGTCCGATGGCTGCAGCT
TCGCCTATCGGGGACTCAGGTGCCTGAAGCAGGCCGAGATGCATGCGGGC
ACCAGCCTGAGCACACTGCTACAGTGTTCCCGCCAGCTGAACGCCACCAA
CGTGGAGCTGCTGCAGTACAGTAAGCTGAAGTCAAAGGAACCTATTCCCT
GCCTCTTTCAGTGCTTTGCGGATGCCATGGGATTCTACGATCCCGATGGG
AACTGGCGGCTGGAAAACTGGAAG
BO16657.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31557-PA | 738 | Obp83ef-RA | 1..558 | 17..574 | 2765 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 901 | CG31557-RA | 27..584 | 17..574 | 2775 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6109959..6110468 | 574..65 | 2535 | 99.8 | Minus |
| 3R | 32079331 | 3R | 6110957..6111008 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:51:22 has no hits.
BO16657.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:42 Download gff for
BO16657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31557-PA | 1..558 | 17..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:09 Download gff for
BO16657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 20..584 | 9..574 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:46 Download gff for
BO16657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 20..584 | 9..574 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:46 Download gff for
BO16657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6109959..6110465 | 68..574 | 99 | <- | Minus |
| 3R | 6110958..6111015 | 9..67 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:09 Download gff for
BO16657.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1935681..1936187 | 68..574 | 99 | <- | Minus |
| arm_3R | 1936680..1936737 | 9..67 | 94 | | Minus |
BO16657.complete Sequence
769 bp assembled on 2006-10-11
GenBank Submission: FJ633880
> BO16657.complete
GAAGTTATCAGTCGACATGAGTTCCCCTCGTGCGGTTCTAGTCAGCCTGT
TCCTGATCTGCAGTCAGGCACTAGCTGACCTTTCTGGTGATGCCCAGACT
CTGGAAAAGTGCCTGCGGCAACTTAGTTCGCCGGAGAGCATTGCTGGCGA
TCTTCGAAAGCTGGAACGGTATTCATCTTGGACGCGGGAGGAGGTACCTT
GCCTGATGCGCTGCTTGGCCAGAGAAAAGGGCTGGTTCGACGTGGAGGAA
AACAAGTGGAGGCTCAAGCAACTGACTGAGGACCTGGGCGCCGATGTCTA
TAACTACTGCAGATTCGAGCTGCGCCGGATGGGGTCCGATGGCTGCAGCT
TCGCCTATCGGGGACTCAGGTGCCTGAAGCAGGCCGAGATGCATGCGGGC
ACCAGCCTGAGCACACTGCTACAGTGTTCCCGCCAGCTGAACGCCACCAA
CGTGGAGCTGCTGCAGTACAGTAAGCTGAAGTCAAAGGAACCTATTCCCT
GCCTCTTTCAGTGCTTTGCGGATGCCATGGGATTCTACGATCCCGATGGA
AACTGGCGGCTGGAAAACTGGAAGCAGGCGTTTGGGCCTTCCGGAAATGA
GGATCAGTCTTCTGGCGCTGACTACAGTGGCTGTCGACTAAGTGGGACTC
AGCGGGAGGTGGCGCTAAGCAAGTGCTCGTGGATGTACCATGAGTACAAA
TGCTGGGAGCGAGTAAATGGGAATAAGCTAGTGGAGGACAACGAAGAGCA
GGCAAGCTTTCTAGACCAT
BO16657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 738 | CG31557-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-RA | 901 | CG31557-RA | 27..761 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6109782..6110468 | 751..65 | 3435 | 100 | Minus |
| 3R | 32079331 | 3R | 6110957..6111008 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:53:53 has no hits.
BO16657.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:26 Download gff for
BO16657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 1..738 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:29 Download gff for
BO16657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 4..745 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:27 Download gff for
BO16657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 27..761 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:26 Download gff for
BO16657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 4..745 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:53 Download gff for
BO16657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp83ef-RA | 27..761 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:53 Download gff for
BO16657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6109780..6110465 | 68..753 | 99 | <- | Minus |
| 3R | 6110958..6111008 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:27 Download gff for
BO16657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1935502..1936187 | 68..753 | 99 | <- | Minus |
| arm_3R | 1936680..1936730 | 17..67 | 100 | | Minus |
BO16657.pep Sequence
Translation from 16 to 769
> BO16657.pep
MSSPRAVLVSLFLICSQALADLSGDAQTLEKCLRQLSSPESIAGDLRKLE
RYSSWTREEVPCLMRCLAREKGWFDVEENKWRLKQLTEDLGADVYNYCRF
ELRRMGSDGCSFAYRGLRCLKQAEMHAGTSLSTLLQCSRQLNATNVELLQ
YSKLKSKEPIPCLFQCFADAMGFYDPDGNWRLENWKQAFGPSGNEDQSSG
ADYSGCRLSGTQREVALSKCSWMYHEYKCWERVNGNKLVEDNEEQASFLD
H
BO16657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp83ef-PA | 245 | CG31557-PA | 1..245 | 1..245 | 1322 | 100 | Plus |
| Obp83cd-PA | 242 | CG15582-PA | 3..238 | 1..230 | 200 | 24.2 | Plus |
