Clone Sequence Records
BO16663.3prime Sequence
461 bp (461 high quality bases) assembled on 2006-10-13
> BO16663.3prime
ATGGTCTAGAAAGCTTGCCAAGAGTCCATGTTTCTTGGCCTCGCCCCTGA
AGCAAGTGCCATAGGCTTCGGCGGCCTCGCAGTGATCATCCGGCACAGTG
ATGGCGGCACAGGTGTCGCCGATCTCCAGGGCAATCTTTAGCTTGGCCGG
ATCGTTGCCCGTGTACTGCTTGGCCTTCTCGTGACCTGCCTCCGTGTCCA
GTTTTCCGTTGGCGTCCAGAATTCCGATGTTCTTCATCACGCAGGCGCGC
AGGCACTTGCCGGCATATGTGCTGGCTGGCTGCTTCTTGACCATTTCCTG
CAGATCGGCATCGGTGGCCCCCACTTCCGGCATGCAGCTCTCGGCTGACT
CCATCAGCTTGGCCAGGGCCTCCTTCTCGTCAAAGGCTCGCACCAGTGCG
GCGCCGAGAAGGACGATTGCCACCAGAATGATTGGAGTAGACTGCATGTC
GACTGATAACT
BO16663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6641-PA | 432 | Pbprp5-RA | 1..429 | 447..19 | 2145 | 100 | Minus |
| CG1668-PA | 453 | Pbprp2-RA | 198..224 | 259..233 | 135 | 100 | Minus |
| CG1668-PB | 453 | Pbprp2-RB | 198..224 | 259..233 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-RA | 575 | CG6641-RA | 36..465 | 448..19 | 2150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7496901..7497330 | 19..448 | 2150 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:41:15 has no hits.
BO16663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:46 Download gff for
BO16663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6641-PA | 1..432 | 15..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:22 Download gff for
BO16663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 31..473 | 10..454 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:50:32 Download gff for
BO16663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 31..473 | 10..454 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:50:32 Download gff for
BO16663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7496893..7497335 | 10..454 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:22 Download gff for
BO16663.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7496893..7497335 | 10..454 | 98 | | Plus |
BO16663.5prime Sequence
461 bp (461 high quality bases) assembled on 2006-10-13
> BO16663.5prime
GAAGTTATCAGTCGACATGCAGTCTACTCCAATCATTCTGGTGGCAATCG
TCCTTCTCGGCGCCGCACTGGTGCGAGCCTTTGACGAGAAGGAGGCCCTG
GCCAAGCTGATGGAGTCAGCCGAGAGCTGCATGCCGGAAGTGGGGGCCAC
CGATGCCGATCTGCAGGAAATGGTCAAGAAGCAGCCAGCCAGCACATATG
CCGGCAAGTGCCTGCGCGCCTGCGTGATGAAGAACATCGGAATTCTGGAC
GCCAACGGAAAACTGGACACGGAGGCAGGTCACGAGAAGGCCAAGCAGTA
CACGGGCAACGATCCGGCCAAGCTAAAGATTGCCCTGGAGATCGGCGACA
CCTGTGCCGCCATCACTGTGCCGGATGATCACTGCGAGGCCGCCGAAGCC
TATGGCACTTGCTTCAGGGGCGAGGCCAAGAAACATGGACTCTTGGCAAG
CTTTCTAGACC
BO16663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6641-PA | 432 | Pbprp5-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
| CG1668-PA | 453 | Pbprp2-RA | 198..224 | 205..231 | 135 | 100 | Plus |
| CG1668-PB | 453 | Pbprp2-RB | 198..224 | 205..231 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-RA | 575 | CG6641-RA | 36..465 | 16..445 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7496901..7497330 | 445..16 | 2150 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:04:22 has no hits.
BO16663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:47 Download gff for
BO16663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6641-PA | 1..432 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:43 Download gff for
BO16663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 31..473 | 10..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:10 Download gff for
BO16663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 31..473 | 10..454 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:10 Download gff for
BO16663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7496893..7497335 | 10..454 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:43 Download gff for
BO16663.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7496893..7497335 | 10..454 | 98 | | Minus |
BO16663.complete Sequence
463 bp assembled on 2006-10-11
GenBank Submission: FJ633881
> BO16663.complete
GAAGTTATCAGTCGACATGCAGTCTACTCCAATCATTCTGGTGGCAATCG
TCCTTCTCGGCGCCGCACTGGTGCGAGCCTTTGACGAGAAGGAGGCCCTG
GCCAAGCTGATGGAGTCAGCCGAGAGCTGCATGCCGGAAGTGGGGGCCAC
CGATGCCGATCTGCAGGAAATGGTCAAGAAGCAGCCAGCCAGCACATATG
CCGGCAAGTGCCTGCGCGCCTGCGTGATGAAGAACATCGGAATTCTGGAC
GCCAACGGAAAACTGGACACGGAGGCAGGTCACGAGAAGGCCAAGCAGTA
CACGGGCAACGATCCGGCCAAGCTAAAGATTGCCCTGGAGATCGGCGACA
CCTGTGCCGCCATCACTGTGCCGGATGATCACTGCGAGGCCGCCGAAGCC
TATGGCACTTGCTTCAGGGGCGAGGCCAAGAAACATGGACTCTTGGCAAG
CTTTCTAGACCAT
BO16663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-RA | 432 | CG6641-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-RA | 575 | CG6641-RA | 36..465 | 16..445 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7496901..7497330 | 445..16 | 2150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:19:57 has no hits.
BO16663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:27 Download gff for
BO16663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp5-RA | 1..432 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:30 Download gff for
BO16663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp5-RA | 26..468 | 10..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:36 Download gff for
BO16663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 37..465 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:27 Download gff for
BO16663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp5-RA | 26..468 | 10..454 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:07 Download gff for
BO16663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp28a-RA | 37..465 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:07 Download gff for
BO16663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7496899..7497329 | 17..447 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:36 Download gff for
BO16663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7496899..7497329 | 17..447 | 99 | | Minus |
BO16663.pep Sequence
Translation from 16 to 463
> BO16663.pep
MQSTPIILVAIVLLGAALVRAFDEKEALAKLMESAESCMPEVGATDADLQ
EMVKKQPASTYAGKCLRACVMKNIGILDANGKLDTEAGHEKAKQYTGNDP
AKLKIALEIGDTCAAITVPDDHCEAAEAYGTCFRGEAKKHGLLASFLDH
BO16663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp28a-PA | 143 | CG6641-PA | 1..143 | 1..143 | 733 | 100 | Plus |
| Obp19d-PB | 150 | CG1668-PB | 8..145 | 4..142 | 244 | 38.3 | Plus |
| Obp19d-PA | 150 | CG1668-PA | 8..145 | 4..142 | 244 | 38.3 | Plus |
