Clone BO16667 Report

Search the DGRC for BO16667

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptskpB-RA
Protein status:BO16667.pep: Imported from assembly
Sequenced Size:517

Clone Sequence Records

BO16667.3prime Sequence

515 bp (515 high quality bases) assembled on 2006-10-13

> BO16667.3prime
ATGGTCTAGAAAGCTTGCTTTATCCTCACACCACTCGTTCTCCTTGCGCA
CCTGTTCCTCCTCCTGTGGCAGAAAGTCATTCTGGATGGCGAAGGTGTCG
CGAATAGCCTGCGGCGACTTGCCCTTGATCATATTGGCCACCGTCTTGCA
GGTGACGTCGAGCAGACCCTGGATATTCAGGTAGTTTGCCGCGAGGATCA
GTTCGAACAGCGTGCCCTGGTCGACTTTGAGAAAGTCAGCGTCCCAGGAT
GAGATGTCATCAGTGCGCTTCTCCTTGTTCTCAACCTCTTCGGTAACCAC
AGGATCGTCCTTGTGATAGGTGGCCCAGTGGAGCACTTTCTTCAGGATCA
GCGAGTTGACATTCGGCAACGGCAGCACACTGTTGTCGCTCTCATCGCCC
AAATCCTCTATTGCAATGCGAATCGTTTCCGAGCACTTGGCGATCTCCTG
ATCCGTGTCAAAGATCTCCTTGTCCGCAGACTCCAGCCGAATGATGGGCA
TGTCGACTGATAACT

BO16667.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8881-PA 486 skpB-RA 1..483 501..19 2415 100 Minus
CG16983-PE 489 skpA-RE 442..482 63..23 155 95.1 Minus
CG16983-PF 489 skpA-RF 442..482 63..23 155 95.1 Minus
CG16983-PC 489 skpA-RC 442..482 63..23 155 95.1 Minus
CG16983-PB 489 skpA-RB 442..482 63..23 155 95.1 Minus
CG16983-PG 489 skpA-RG 442..482 63..23 155 95.1 Minus
CG16983-PD 489 skpA-RD 442..482 63..23 155 95.1 Minus
CG16983-PA 489 skpA-RA 442..482 63..23 155 95.1 Minus
CG16983-PH 489 skpA-RH 442..482 63..23 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-RA 877 CG8881-RA 248..730 501..19 2415 100 Minus
SkpA-RI 826 CG16983-RI 167..518 374..23 440 75.7 Minus
SkpA-RH 1544 CG16983-RH 885..1236 374..23 440 75.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12139442..12139924 19..501 2415 100 Plus
X 23542271 X 657240..657591 374..23 440 75 Minus
X 23542271 X 19816391..19816567 260..84 210 74.6 Minus
2R 25286936 2R 23458303..23458401 121..219 195 79.8 Plus
Blast to na_te.dros performed on 2015-02-03 06:08:45 has no hits.

BO16667.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:51 Download gff for BO16667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8881-PA 1..486 16..501 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:24:17 Download gff for BO16667.3prime
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 240..734 15..509 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:34:11 Download gff for BO16667.3prime
Subject Subject Range Query Range Percent Splice Strand
SkpB-RA 240..734 15..509 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:34:11 Download gff for BO16667.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12139438..12139924 15..501 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:24:17 Download gff for BO16667.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8026943..8027429 15..501 99 <- Plus

BO16667.complete Sequence

517 bp assembled on 2010-04-09

GenBank Submission: KX799925

> BO16667.complete
GAAGTTATCAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGG
AGATCTTTGACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGC
ATTGCAATAGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTT
GCCGAATGTCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCT
ATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAG
CGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCA
GGGCACGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGG
GTCTGCTCGACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAG
TCGCCGCAGGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCC
ACAGGAGGAGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAG
CAAGCTTTCTAGACCAT

BO16667.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-RA 486 CG8881-PA 1..483 17..499 2415 100 Plus
SkpA-RI 489 CG16983-PI 131..482 144..495 440 75 Plus
SkpA-RH 489 CG16983-PH 131..482 144..495 440 75 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-RA 877 CG8881-RA 248..730 17..499 2415 100 Plus
SkpA-RI 826 CG16983-RI 167..518 144..495 440 75 Plus
SkpA-RH 1544 CG16983-RH 885..1236 144..495 440 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12139442..12139924 499..17 2415 100 Minus
X 23542271 X 657240..657591 144..495 440 75 Plus
X 23542271 X 19816391..19816567 258..434 210 74.6 Plus
2R 25286936 2R 23458303..23458401 397..299 195 79.8 Minus
Blast to na_te.dros performed on 2014-11-27 00:52:19 has no hits.

BO16667.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:14 Download gff for BO16667.complete
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 81..563 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:54 Download gff for BO16667.complete
Subject Subject Range Query Range Percent Splice Strand
skpB-RA 248..730 17..501 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:03 Download gff for BO16667.complete
Subject Subject Range Query Range Percent Splice Strand
SkpB-RA 248..730 17..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:03 Download gff for BO16667.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12139439..12139924 17..501 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:54 Download gff for BO16667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8026944..8027429 17..501 99   Minus

BO16667.pep Sequence

Translation from 16 to 517

> BO16667.pep
MPIIRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNS
LILKKVLHWATYHKDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFE
LILAANYLNIQGLLDVTCKTVANMIKGKSPQAIRDTFAIQNDFLPQEEEQ
VRKENEWCEDKASFLDH

BO16667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
SkpB-PA 161 CG8881-PA 1..161 1..161 835 100 Plus
SkpA-PI 162 CG16983-PI 1..162 1..161 622 73.5 Plus
SkpA-PH 162 CG16983-PH 1..162 1..161 622 73.5 Plus
SkpA-PA 162 CG16983-PA 1..162 1..161 622 73.5 Plus
SkpA-PD 162 CG16983-PD 1..162 1..161 622 73.5 Plus