Clone Sequence Records
BO16667.3prime Sequence
515 bp (515 high quality bases) assembled on 2006-10-13
> BO16667.3prime
ATGGTCTAGAAAGCTTGCTTTATCCTCACACCACTCGTTCTCCTTGCGCA
CCTGTTCCTCCTCCTGTGGCAGAAAGTCATTCTGGATGGCGAAGGTGTCG
CGAATAGCCTGCGGCGACTTGCCCTTGATCATATTGGCCACCGTCTTGCA
GGTGACGTCGAGCAGACCCTGGATATTCAGGTAGTTTGCCGCGAGGATCA
GTTCGAACAGCGTGCCCTGGTCGACTTTGAGAAAGTCAGCGTCCCAGGAT
GAGATGTCATCAGTGCGCTTCTCCTTGTTCTCAACCTCTTCGGTAACCAC
AGGATCGTCCTTGTGATAGGTGGCCCAGTGGAGCACTTTCTTCAGGATCA
GCGAGTTGACATTCGGCAACGGCAGCACACTGTTGTCGCTCTCATCGCCC
AAATCCTCTATTGCAATGCGAATCGTTTCCGAGCACTTGGCGATCTCCTG
ATCCGTGTCAAAGATCTCCTTGTCCGCAGACTCCAGCCGAATGATGGGCA
TGTCGACTGATAACT
BO16667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8881-PA | 486 | skpB-RA | 1..483 | 501..19 | 2415 | 100 | Minus |
CG16983-PE | 489 | skpA-RE | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PF | 489 | skpA-RF | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PC | 489 | skpA-RC | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PB | 489 | skpA-RB | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PG | 489 | skpA-RG | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PD | 489 | skpA-RD | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PA | 489 | skpA-RA | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PH | 489 | skpA-RH | 442..482 | 63..23 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 877 | CG8881-RA | 248..730 | 501..19 | 2415 | 100 | Minus |
SkpA-RI | 826 | CG16983-RI | 167..518 | 374..23 | 440 | 75.7 | Minus |
SkpA-RH | 1544 | CG16983-RH | 885..1236 | 374..23 | 440 | 75.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12139442..12139924 | 19..501 | 2415 | 100 | Plus |
X | 23542271 | X | 657240..657591 | 374..23 | 440 | 75 | Minus |
X | 23542271 | X | 19816391..19816567 | 260..84 | 210 | 74.6 | Minus |
2R | 25286936 | 2R | 23458303..23458401 | 121..219 | 195 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:08:45 has no hits.
BO16667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:51 Download gff for
BO16667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8881-PA | 1..486 | 16..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:24:17 Download gff for
BO16667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 240..734 | 15..509 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:34:11 Download gff for
BO16667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpB-RA | 240..734 | 15..509 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:34:11 Download gff for
BO16667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12139438..12139924 | 15..501 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:24:17 Download gff for
BO16667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8026943..8027429 | 15..501 | 99 | <- | Plus |
BO16667.complete Sequence
517 bp assembled on 2010-04-09
GenBank Submission: KX799925
> BO16667.complete
GAAGTTATCAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGG
AGATCTTTGACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGC
ATTGCAATAGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTT
GCCGAATGTCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCT
ATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAG
CGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCA
GGGCACGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGG
GTCTGCTCGACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAG
TCGCCGCAGGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCC
ACAGGAGGAGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAG
CAAGCTTTCTAGACCAT
BO16667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 486 | CG8881-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
SkpA-RI | 489 | CG16983-PI | 131..482 | 144..495 | 440 | 75 | Plus |
SkpA-RH | 489 | CG16983-PH | 131..482 | 144..495 | 440 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 877 | CG8881-RA | 248..730 | 17..499 | 2415 | 100 | Plus |
SkpA-RI | 826 | CG16983-RI | 167..518 | 144..495 | 440 | 75 | Plus |
SkpA-RH | 1544 | CG16983-RH | 885..1236 | 144..495 | 440 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12139442..12139924 | 499..17 | 2415 | 100 | Minus |
X | 23542271 | X | 657240..657591 | 144..495 | 440 | 75 | Plus |
X | 23542271 | X | 19816391..19816567 | 258..434 | 210 | 74.6 | Plus |
2R | 25286936 | 2R | 23458303..23458401 | 397..299 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:52:19 has no hits.
BO16667.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:29:14 Download gff for
BO16667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 81..563 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:54 Download gff for
BO16667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 248..730 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:03 Download gff for
BO16667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpB-RA | 248..730 | 17..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:03 Download gff for
BO16667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12139439..12139924 | 17..501 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:54 Download gff for
BO16667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8026944..8027429 | 17..501 | 99 | | Minus |
BO16667.pep Sequence
Translation from 16 to 517
> BO16667.pep
MPIIRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNS
LILKKVLHWATYHKDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFE
LILAANYLNIQGLLDVTCKTVANMIKGKSPQAIRDTFAIQNDFLPQEEEQ
VRKENEWCEDKASFLDH
BO16667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:58:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-PA | 161 | CG8881-PA | 1..161 | 1..161 | 835 | 100 | Plus |
SkpA-PI | 162 | CG16983-PI | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PH | 162 | CG16983-PH | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PA | 162 | CG16983-PA | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PD | 162 | CG16983-PD | 1..162 | 1..161 | 622 | 73.5 | Plus |