Clone Sequence Records
BO16671.3prime Sequence
602 bp (602 high quality bases) assembled on 2006-10-13
> BO16671.3prime
ATGGTCTAGAAAGCTTGCGTTTTGCCTCCAGTGCGGCCACGTCTTGATCT
CGTTGTACAGAGCATCACCTGGGCAGGAGGTGGCCTTGGTCTGCCGATGA
CCGAACAGCGTGTAGTTATCCTTGAGGTATCCACGCTGCTTGGCCAGCTC
GATTAGATCCTTGGCGTTCTGGAGCATCTGGGCGGATGGGGCACTGCGTT
CGAAGTTGCCAATGAAGACGATGCCAATGCTCTTGCGATTATAGTTGGGG
GAGTGTGATCCCTGGAGCCCGAAACCACGACCCTCGTACACCTTGCCATC
ACCGGCCACGATAAAGTTATATCCAATATCGCTGAAATTGCGGCGACCCT
TGTGATCCGACTGAATGTTCTTGATCATGCGCTTGCACTGCTCGGATGTG
GAGCAGCCATTAGGATTGTCCGAATGATGGATGATCACATAGTCGACGGC
GCCGGAAATCCTAGAAGGCGATCGAGCAGACACCGCACCCCAACTGCTGC
GTGGTTCAATCTGCAGGGCATTGGCGGATAGAGCTAAGCAGCAAAGCACT
AAAGCGGCCACAAAACTAATTGCCGTTGATGTGTTCATGTCGACTGATAA
CT
BO16671.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9681-PA | 573 | PGRP-SB1-RA | 1..570 | 588..19 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:51:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB1-RA | 623 | CG9681-RA | 7..576 | 588..19 | 2850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16727346..16727862 | 19..535 | 2585 | 100 | Plus |
| 3L | 28110227 | 3L | 16727929..16727983 | 534..588 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:51:45 has no hits.
BO16671.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:55 Download gff for
BO16671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9681-PA | 1..573 | 18..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:12 Download gff for
BO16671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..584 | 13..591 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:49 Download gff for
BO16671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..584 | 13..591 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:49 Download gff for
BO16671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16727338..16727860 | 13..533 | 99 | <- | Plus |
| 3L | 16727929..16727983 | 534..588 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:12 Download gff for
BO16671.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16720438..16720960 | 13..533 | 99 | <- | Plus |
| arm_3L | 16721029..16721083 | 534..588 | 100 | | Plus |
BO16671.5prime Sequence
602 bp (589 high quality bases) assembled on 2006-10-13
> BO16671.5prime
GAAGTTATCAGTCGACATGAACACATCAACGGCAATTAGTTTTGTGGCCG
CTTTAGTGCTTTGCTGCTTAGCTCTATCCGCCAATGCCCTGCAGATTGAA
CCACGCAGCAGTTGGGGTGCGGTGTCTGCTCGATCGCCTTCTAGGATTTC
CGGCGCCGTCGACTATGTGATCATCCATCATTCGGACAATCCTAATGGCT
GCTCCACATCCGAGCAGTGCAAGCGCATGATCAAGAACATTCAGTCGGAT
CACAAGGGTCGCCGCAATTTCAGCGATATTGGATATAACTTTATCGTGGC
CGGTGATGGCAAGGTGTACGAGGGTCGTGGTTTCGGGCTCCAGGGATCAC
ACTCCCCCAACTATAATCGCAAGAGCATTGGCATCGTCTTCATTGGCAAC
TTCGAACGCAGTGCCCCATCCGCCCAGATGCTCCAGAACGCCAAGGATCT
AATCGAGCTGGCCAAGCAGCGTGGATACCTCAAGGATAACTACACGCTGT
TCGGTCATCGGCAGACCAAGGCCACCTCCTGCCCAGGTGATGCTCTGTAC
AACGAGATCAAGACGTGGCCGCACTGGAGGCAAAACGCAAGCTTTCTAGA
CC
BO16671.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9681-PA | 573 | PGRP-SB1-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB1-RA | 623 | CG9681-RA | 7..576 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16727346..16727862 | 586..70 | 2585 | 100 | Minus |
| 3L | 28110227 | 3L | 16727929..16727983 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:56:00 has no hits.
BO16671.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:56 Download gff for
BO16671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9681-PA | 1..573 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:18 Download gff for
BO16671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..584 | 14..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:16 Download gff for
BO16671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..584 | 14..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:16 Download gff for
BO16671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16727338..16727860 | 72..592 | 99 | <- | Minus |
| 3L | 16727929..16727983 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:18 Download gff for
BO16671.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16720438..16720960 | 72..592 | 99 | <- | Minus |
| arm_3L | 16721029..16721083 | 17..71 | 100 | | Minus |
BO16671.complete Sequence
604 bp assembled on 2006-10-11
GenBank Submission: FJ633882
> BO16671.complete
GAAGTTATCAGTCGACATGAACACATCAACGGCAATTAGTTTTGTGGCCG
CTTTAGTGCTTTGCTGCTTAGCTCTATCCGCCAATGCCCTGCAGATTGAA
CCACGCAGCAGTTGGGGTGCGGTGTCTGCTCGATCGCCTTCTAGGATTTC
CGGCGCCGTCGACTATGTGATCATCCATCATTCGGACAATCCTAATGGCT
GCTCCACATCCGAGCAGTGCAAGCGCATGATCAAGAACATTCAGTCGGAT
CACAAGGGTCGCCGCAATTTCAGCGATATTGGATATAACTTTATCGTGGC
CGGTGATGGCAAGGTGTACGAGGGTCGTGGTTTCGGGCTCCAGGGATCAC
ACTCCCCCAACTATAATCGCAAGAGCATTGGCATCGTCTTCATTGGCAAC
TTCGAACGCAGTGCCCCATCCGCCCAGATGCTCCAGAACGCCAAGGATCT
AATCGAGCTGGCCAAGCAGCGTGGATACCTCAAGGATAACTACACGCTGT
TCGGTCATCGGCAGACCAAGGCCACCTCCTGCCCAGGTGATGCTCTGTAC
AACGAGATCAAGACGTGGCCGCACTGGAGGCAAAACGCAAGCTTTCTAGA
CCAT
BO16671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB1-RA | 573 | CG9681-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB1-RA | 623 | CG9681-RA | 7..576 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16727346..16727862 | 586..70 | 2585 | 100 | Minus |
| 3L | 28110227 | 3L | 16727929..16727983 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:15:37 has no hits.
BO16671.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:26:29 Download gff for
BO16671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 1..573 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:32 Download gff for
BO16671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 36..613 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:39 Download gff for
BO16671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 7..576 | 17..588 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:26:29 Download gff for
BO16671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 36..613 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:12 Download gff for
BO16671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SB1-RA | 7..576 | 17..588 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:12 Download gff for
BO16671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16727344..16727860 | 72..588 | 99 | <- | Minus |
| 3L | 16727929..16727983 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:39 Download gff for
BO16671.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16720444..16720960 | 72..588 | 99 | <- | Minus |
| arm_3L | 16721029..16721083 | 17..71 | 100 | | Minus |
BO16671.pep Sequence
Translation from 16 to 604
> BO16671.pep
MNTSTAISFVAALVLCCLALSANALQIEPRSSWGAVSARSPSRISGAVDY
VIIHHSDNPNGCSTSEQCKRMIKNIQSDHKGRRNFSDIGYNFIVAGDGKV
YEGRGFGLQGSHSPNYNRKSIGIVFIGNFERSAPSAQMLQNAKDLIELAK
QRGYLKDNYTLFGHRQTKATSCPGDALYNEIKTWPHWRQNASFLDH
BO16671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SB1-PA | 190 | CG9681-PA | 1..190 | 1..190 | 1009 | 100 | Plus |
| PGRP-SB2-PA | 182 | CG9697-PA | 6..179 | 12..188 | 456 | 52 | Plus |
| PGRP-SC2-PA | 184 | CG14745-PA | 5..183 | 12..188 | 395 | 41.1 | Plus |
| PGRP-LB-PF | 215 | CG14704-PF | 18..175 | 30..187 | 393 | 44.9 | Plus |
| PGRP-LB-PE | 215 | CG14704-PE | 18..175 | 30..187 | 393 | 44.9 | Plus |
