Clone BO16672 Report

Search the DGRC for BO16672

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS18C-RA
Protein status:BO16672.pep: validated full length
Sequenced Size:454

Clone Sequence Records

BO16672.3prime Sequence

452 bp (452 high quality bases) assembled on 2006-10-13

> BO16672.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTGTGGGCGAACGGGCCGCTCGGGAT
CAAAGAGCTTGGGGTCCTGCAGGAAGTCGAGGTCCTTGTGGTATCCCGGC
ATCAGCAGGCACTGCTGGGCACGCAGAATGGCCTGCTCCACTTGCTCCTG
CCGGCGCTTGCATAATCCGGTGATGTGACGCCCGTAAATGCGACCCGTGT
ATGGCGATTGGAATTGGGAGAGCAGCTTCACGTTCTTGTAGTGCGGCTCG
ATGCTGTGCTTGCATAGGATGCACTGCTGGGGGTCCTTTTCATAGGGATT
CTTTATGTCGATCGGCAGATCCAAGTCGGACGACTCCGGGGCAGCTGAAT
AGAGGCGGCTGACGGTTCCCAGCTGCTGTCTGCCCACCAGATTGACCAAC
GTGGCATTTTGTGCCAGAAACTTTCCTAATTTCAACATGTCGACTGATAA
CT

BO16672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG9688-PA 423 mRpS18C-RA 1..420 438..19 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-RA 528 CG9688-RA 38..458 439..19 2105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30424100..30424486 405..19 1935 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:26:56 has no hits.

BO16672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:57 Download gff for BO16672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9688-PA 1..423 18..438 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:41 Download gff for BO16672.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 38..467 8..439 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:49 Download gff for BO16672.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 38..467 8..439 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:49 Download gff for BO16672.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30424011..30424045 405..439 100 -> Minus
3R 30424101..30424495 8..404 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:41 Download gff for BO16672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26249733..26249767 405..439 100 -> Minus
arm_3R 26249823..26250217 8..404 98   Minus

BO16672.5prime Sequence

452 bp (452 high quality bases) assembled on 2006-10-13

> BO16672.5prime
GAAGTTATCAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATG
CCACGTTGGTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGC
CTCTATTCAGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACAT
AAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACA
GCATCGAGCCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCG
CCATACACGGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCG
CCGGCAGGAGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGC
TGATGCCGGGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTC
TTTGATCCCGAGCGGCCCGTTCGCCCACACAAGTACGCAAGCTTTCTAGA
CC

BO16672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9688-PA 423 mRpS18C-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-RA 528 CG9688-RA 38..458 16..436 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30424100..30424486 50..436 1935 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:34:18 has no hits.

BO16672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:57 Download gff for BO16672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9688-PA 1..423 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:51 Download gff for BO16672.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 38..467 16..447 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:01 Download gff for BO16672.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 38..467 16..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:01 Download gff for BO16672.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30424011..30424045 16..50 100 -> Plus
3R 30424101..30424495 51..447 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:51 Download gff for BO16672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26249733..26249767 16..50 100 -> Plus
arm_3R 26249823..26250217 51..447 98   Plus

BO16672.complete Sequence

454 bp assembled on 2006-10-11

GenBank Submission: FJ633883

> BO16672.complete
GAAGTTATCAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATG
CCACGTTGGTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGC
CTCTATTCAGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACAT
AAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACA
GCATCGAGCCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCG
CCATACACGGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCG
CCGGCAGGAGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGC
TGATGCCGGGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTC
TTTGATCCCGAGCGGCCCGTTCGCCCACACAAGTACGCAAGCTTTCTAGA
CCAT

BO16672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-RA 423 CG9688-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:44
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-RA 528 CG9688-RA 38..458 16..436 2105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30424100..30424486 50..436 1935 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:50:42 has no hits.

BO16672.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:34 Download gff for BO16672.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 1..423 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:09 Download gff for BO16672.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 1..423 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:11 Download gff for BO16672.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 44..458 22..438 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:35 Download gff for BO16672.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 1..423 17..437 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:43 Download gff for BO16672.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS18C-RA 44..458 22..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:43 Download gff for BO16672.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30424017..30424045 22..50 100 -> Plus
3R 30424101..30424486 51..438 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:11 Download gff for BO16672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26249739..26249767 22..50 100 -> Plus
arm_3R 26249823..26250208 51..438 99   Plus

BO16672.pep Sequence

Translation from 16 to 454

> BO16672.pep
MLKLGKFLAQNATLVNLVGRQQLGTVSRLYSAAPESSDLDLPIDIKNPYE
KDPQQCILCKHSIEPHYKNVKLLSQFQSPYTGRIYGRHITGLCKRRQEQV
EQAILRAQQCLLMPGYHKDLDFLQDPKLFDPERPVRPHKYASFLDH

BO16672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS18C-PA 140 CG9688-PA 1..140 1..140 745 100 Plus