Clone Sequence Records
BO16672.3prime Sequence
452 bp (452 high quality bases) assembled on 2006-10-13
> BO16672.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTGTGGGCGAACGGGCCGCTCGGGAT
CAAAGAGCTTGGGGTCCTGCAGGAAGTCGAGGTCCTTGTGGTATCCCGGC
ATCAGCAGGCACTGCTGGGCACGCAGAATGGCCTGCTCCACTTGCTCCTG
CCGGCGCTTGCATAATCCGGTGATGTGACGCCCGTAAATGCGACCCGTGT
ATGGCGATTGGAATTGGGAGAGCAGCTTCACGTTCTTGTAGTGCGGCTCG
ATGCTGTGCTTGCATAGGATGCACTGCTGGGGGTCCTTTTCATAGGGATT
CTTTATGTCGATCGGCAGATCCAAGTCGGACGACTCCGGGGCAGCTGAAT
AGAGGCGGCTGACGGTTCCCAGCTGCTGTCTGCCCACCAGATTGACCAAC
GTGGCATTTTGTGCCAGAAACTTTCCTAATTTCAACATGTCGACTGATAA
CT
BO16672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9688-PA | 423 | mRpS18C-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-RA | 528 | CG9688-RA | 38..458 | 439..19 | 2105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30424100..30424486 | 405..19 | 1935 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:26:56 has no hits.
BO16672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:57 Download gff for
BO16672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9688-PA | 1..423 | 18..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:41 Download gff for
BO16672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 38..467 | 8..439 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:49 Download gff for
BO16672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 38..467 | 8..439 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:49 Download gff for
BO16672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30424011..30424045 | 405..439 | 100 | -> | Minus |
3R | 30424101..30424495 | 8..404 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:41 Download gff for
BO16672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26249733..26249767 | 405..439 | 100 | -> | Minus |
arm_3R | 26249823..26250217 | 8..404 | 98 | | Minus |
BO16672.5prime Sequence
452 bp (452 high quality bases) assembled on 2006-10-13
> BO16672.5prime
GAAGTTATCAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATG
CCACGTTGGTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGC
CTCTATTCAGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACAT
AAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACA
GCATCGAGCCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCG
CCATACACGGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCG
CCGGCAGGAGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGC
TGATGCCGGGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTC
TTTGATCCCGAGCGGCCCGTTCGCCCACACAAGTACGCAAGCTTTCTAGA
CC
BO16672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9688-PA | 423 | mRpS18C-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-RA | 528 | CG9688-RA | 38..458 | 16..436 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30424100..30424486 | 50..436 | 1935 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:34:18 has no hits.
BO16672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:57 Download gff for
BO16672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9688-PA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:51 Download gff for
BO16672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 38..467 | 16..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:01 Download gff for
BO16672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 38..467 | 16..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:01 Download gff for
BO16672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30424011..30424045 | 16..50 | 100 | -> | Plus |
3R | 30424101..30424495 | 51..447 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:51 Download gff for
BO16672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26249733..26249767 | 16..50 | 100 | -> | Plus |
arm_3R | 26249823..26250217 | 51..447 | 98 | | Plus |
BO16672.complete Sequence
454 bp assembled on 2006-10-11
GenBank Submission: FJ633883
> BO16672.complete
GAAGTTATCAGTCGACATGTTGAAATTAGGAAAGTTTCTGGCACAAAATG
CCACGTTGGTCAATCTGGTGGGCAGACAGCAGCTGGGAACCGTCAGCCGC
CTCTATTCAGCTGCCCCGGAGTCGTCCGACTTGGATCTGCCGATCGACAT
AAAGAATCCCTATGAAAAGGACCCCCAGCAGTGCATCCTATGCAAGCACA
GCATCGAGCCGCACTACAAGAACGTGAAGCTGCTCTCCCAATTCCAATCG
CCATACACGGGTCGCATTTACGGGCGTCACATCACCGGATTATGCAAGCG
CCGGCAGGAGCAAGTGGAGCAGGCCATTCTGCGTGCCCAGCAGTGCCTGC
TGATGCCGGGATACCACAAGGACCTCGACTTCCTGCAGGACCCCAAGCTC
TTTGATCCCGAGCGGCCCGTTCGCCCACACAAGTACGCAAGCTTTCTAGA
CCAT
BO16672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-RA | 423 | CG9688-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-RA | 528 | CG9688-RA | 38..458 | 16..436 | 2105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30424100..30424486 | 50..436 | 1935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:50:42 has no hits.
BO16672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:34 Download gff for
BO16672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:09 Download gff for
BO16672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:11 Download gff for
BO16672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 44..458 | 22..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:35 Download gff for
BO16672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 1..423 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:43 Download gff for
BO16672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS18C-RA | 44..458 | 22..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:43 Download gff for
BO16672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30424017..30424045 | 22..50 | 100 | -> | Plus |
3R | 30424101..30424486 | 51..438 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:11 Download gff for
BO16672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26249739..26249767 | 22..50 | 100 | -> | Plus |
arm_3R | 26249823..26250208 | 51..438 | 99 | | Plus |
BO16672.pep Sequence
Translation from 16 to 454
> BO16672.pep
MLKLGKFLAQNATLVNLVGRQQLGTVSRLYSAAPESSDLDLPIDIKNPYE
KDPQQCILCKHSIEPHYKNVKLLSQFQSPYTGRIYGRHITGLCKRRQEQV
EQAILRAQQCLLMPGYHKDLDFLQDPKLFDPERPVRPHKYASFLDH
BO16672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS18C-PA | 140 | CG9688-PA | 1..140 | 1..140 | 745 | 100 | Plus |