Clone Sequence Records
BO16674.3prime Sequence
323 bp (323 high quality bases) assembled on 2006-10-13
> BO16674.3prime
ATGGTCTAGAAAGCTTGCCTCGAGCGCATTCAGAAACGGGGCTATGGAGG
CTATATCCTCGCAGTCCGGGATGGCTTTGCCCTTGAACTTGAGGCAGGAA
AGGGCACAGGTCTGCCCCTGGAAGTAATCTCCCAGCATGGTCTTGCACTG
GACGCAGTTGTTAAGGCACACCTGAACAAAATCAATGCCACCCATGGAGT
CAAATCTCTTGTGCGTATAATGACTTATGGCGGGCAATGCATTTCCAAAA
TGCACCAGGCACATTGCAACTGCCACAAAGGTGCACAAAATCAAGGGCTT
GCAGTTCATGTCGACTGATAACT
BO16674.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5400-PA | 294 | Eh-RA | 1..291 | 309..19 | 1455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-RB | 700 | CG5400-RB | 159..450 | 310..19 | 1460 | 100 | Minus |
Eh-RA | 704 | CG5400-RA | 163..454 | 310..19 | 1460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17446892..17447054 | 19..181 | 785 | 98.8 | Plus |
3R | 32079331 | 3R | 17447351..17447460 | 201..310 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:27:17 has no hits.
BO16674.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:59 Download gff for
BO16674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5400-PA | 1..294 | 16..309 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:46 Download gff for
BO16674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 154..460 | 13..320 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:45 Download gff for
BO16674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 154..460 | 13..320 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:45 Download gff for
BO16674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17446886..17447044 | 13..171 | 98 | <- | Plus |
3R | 17447246..17447274 | 172..200 | 100 | <- | Plus |
3R | 17447351..17447469 | 201..320 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:46 Download gff for
BO16674.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13272608..13272766 | 13..171 | 98 | <- | Plus |
arm_3R | 13272968..13272996 | 172..200 | 100 | <- | Plus |
arm_3R | 13273073..13273191 | 201..320 | 96 | | Plus |
BO16674.5prime Sequence
323 bp (323 high quality bases) assembled on 2006-10-13
> BO16674.5prime
GAAGTTATCAGTCGACATGAACTGCAAGCCCTTGATTTTGTGCACCTTTG
TGGCAGTTGCAATGTGCCTGGTGCATTTTGGAAATGCATTGCCCGCCATA
AGTCATTATACGCACAAGAGATTTGACTCCATGGGTGGCATTGATTTTGT
TCAGGTGTGCCTTAACAACTGCGTCCAGTGCAAGACCATGCTGGGAGATT
ACTTCCAGGGGCAGACCTGTGCCCTTTCCTGCCTCAAGTTCAAGGGCAAA
GCCATCCCGGACTGCGAGGATATAGCCTCCATAGCCCCGTTTCTGAATGC
GCTCGAGGCAAGCTTTCTAGACC
BO16674.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5400-PA | 294 | Eh-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-RB | 700 | CG5400-RB | 159..450 | 16..307 | 1460 | 100 | Plus |
Eh-RA | 704 | CG5400-RA | 163..454 | 16..307 | 1460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17446892..17447054 | 307..145 | 785 | 98.8 | Minus |
3R | 32079331 | 3R | 17447351..17447460 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:34:30 has no hits.
BO16674.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:00 Download gff for
BO16674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5400-PA | 1..294 | 17..310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:07 Download gff for
BO16674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 154..460 | 6..313 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:35 Download gff for
BO16674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 154..460 | 6..313 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:35 Download gff for
BO16674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17446886..17447044 | 155..313 | 98 | <- | Minus |
3R | 17447246..17447274 | 126..154 | 100 | <- | Minus |
3R | 17447351..17447469 | 6..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:07 Download gff for
BO16674.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13272608..13272766 | 155..313 | 98 | <- | Minus |
arm_3R | 13272968..13272996 | 126..154 | 100 | <- | Minus |
arm_3R | 13273073..13273191 | 6..125 | 96 | | Minus |
BO16674.complete Sequence
325 bp assembled on 2006-10-11
GenBank Submission: FJ633884
> BO16674.complete
GAAGTTATCAGTCGACATGAACTGCAAGCCCTTGATTTTGTGCACCTTTG
TGGCAGTTGCAATGTGCCTGGTGCATTTTGGAAATGCATTGCCCGCCATA
AGTCATTATACGCACAAGAGATTTGACTCCATGGGTGGCATTGATTTTGT
TCAGGTGTGCCTTAACAACTGCGTCCAGTGCAAGACCATGCTGGGAGATT
ACTTCCAGGGGCAGACCTGTGCCCTTTCCTGCCTCAAGTTCAAGGGCAAA
GCCATCCCGGACTGCGAGGATATAGCCTCCATAGCCCCGTTTCTGAATGC
GCTCGAGGCAAGCTTTCTAGACCAT
BO16674.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-RB | 294 | CG5400-PB | 1..291 | 17..307 | 1455 | 100 | Plus |
Eh-RA | 294 | CG5400-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-RB | 700 | CG5400-RB | 159..450 | 16..307 | 1460 | 100 | Plus |
Eh-RA | 704 | CG5400-RA | 163..454 | 16..307 | 1460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17446892..17447054 | 307..145 | 785 | 98.8 | Minus |
3R | 32079331 | 3R | 17447351..17447460 | 125..16 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:18:54 has no hits.
BO16674.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:20 Download gff for
BO16674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 1..294 | 17..310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:12 Download gff for
BO16674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 824..1130 | 6..313 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:59 Download gff for
BO16674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 164..454 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:20 Download gff for
BO16674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 824..1130 | 6..313 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:39 Download gff for
BO16674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eh-RA | 164..454 | 17..309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:39 Download gff for
BO16674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17446889..17447044 | 155..309 | 98 | <- | Minus |
3R | 17447246..17447274 | 126..154 | 100 | <- | Minus |
3R | 17447351..17447459 | 17..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:59 Download gff for
BO16674.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13272611..13272766 | 155..309 | 98 | <- | Minus |
arm_3R | 13272968..13272996 | 126..154 | 100 | <- | Minus |
arm_3R | 13273073..13273181 | 17..125 | 100 | | Minus |
BO16674.pep Sequence
Translation from 16 to 325
> BO16674.pep
MNCKPLILCTFVAVAMCLVHFGNALPAISHYTHKRFDSMGGIDFVQVCLN
NCVQCKTMLGDYFQGQTCALSCLKFKGKAIPDCEDIASIAPFLNALEASF
LDH
BO16674.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eh-PB | 97 | CG5400-PB | 1..97 | 1..97 | 530 | 100 | Plus |
Eh-PA | 97 | CG5400-PA | 1..97 | 1..97 | 530 | 100 | Plus |