Clone BO16674 Report

Search the DGRC for BO16674

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptEh-RA
Protein status:BO16674.pep: validated full length
Sequenced Size:325

Clone Sequence Records

BO16674.3prime Sequence

323 bp (323 high quality bases) assembled on 2006-10-13

> BO16674.3prime
ATGGTCTAGAAAGCTTGCCTCGAGCGCATTCAGAAACGGGGCTATGGAGG
CTATATCCTCGCAGTCCGGGATGGCTTTGCCCTTGAACTTGAGGCAGGAA
AGGGCACAGGTCTGCCCCTGGAAGTAATCTCCCAGCATGGTCTTGCACTG
GACGCAGTTGTTAAGGCACACCTGAACAAAATCAATGCCACCCATGGAGT
CAAATCTCTTGTGCGTATAATGACTTATGGCGGGCAATGCATTTCCAAAA
TGCACCAGGCACATTGCAACTGCCACAAAGGTGCACAAAATCAAGGGCTT
GCAGTTCATGTCGACTGATAACT

BO16674.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5400-PA 294 Eh-RA 1..291 309..19 1455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:20
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-RB 700 CG5400-RB 159..450 310..19 1460 100 Minus
Eh-RA 704 CG5400-RA 163..454 310..19 1460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17446892..17447054 19..181 785 98.8 Plus
3R 32079331 3R 17447351..17447460 201..310 550 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:27:17 has no hits.

BO16674.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:54:59 Download gff for BO16674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5400-PA 1..294 16..309 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:46 Download gff for BO16674.3prime
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 154..460 13..320 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:20:45 Download gff for BO16674.3prime
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 154..460 13..320 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:20:45 Download gff for BO16674.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17446886..17447044 13..171 98 <- Plus
3R 17447246..17447274 172..200 100 <- Plus
3R 17447351..17447469 201..320 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:46 Download gff for BO16674.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13272608..13272766 13..171 98 <- Plus
arm_3R 13272968..13272996 172..200 100 <- Plus
arm_3R 13273073..13273191 201..320 96   Plus

BO16674.5prime Sequence

323 bp (323 high quality bases) assembled on 2006-10-13

> BO16674.5prime
GAAGTTATCAGTCGACATGAACTGCAAGCCCTTGATTTTGTGCACCTTTG
TGGCAGTTGCAATGTGCCTGGTGCATTTTGGAAATGCATTGCCCGCCATA
AGTCATTATACGCACAAGAGATTTGACTCCATGGGTGGCATTGATTTTGT
TCAGGTGTGCCTTAACAACTGCGTCCAGTGCAAGACCATGCTGGGAGATT
ACTTCCAGGGGCAGACCTGTGCCCTTTCCTGCCTCAAGTTCAAGGGCAAA
GCCATCCCGGACTGCGAGGATATAGCCTCCATAGCCCCGTTTCTGAATGC
GCTCGAGGCAAGCTTTCTAGACC

BO16674.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5400-PA 294 Eh-RA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-RB 700 CG5400-RB 159..450 16..307 1460 100 Plus
Eh-RA 704 CG5400-RA 163..454 16..307 1460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17446892..17447054 307..145 785 98.8 Minus
3R 32079331 3R 17447351..17447460 125..16 550 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:34:30 has no hits.

BO16674.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:00 Download gff for BO16674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5400-PA 1..294 17..310 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:07 Download gff for BO16674.5prime
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 154..460 6..313 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:35 Download gff for BO16674.5prime
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 154..460 6..313 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:35 Download gff for BO16674.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17446886..17447044 155..313 98 <- Minus
3R 17447246..17447274 126..154 100 <- Minus
3R 17447351..17447469 6..125 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:07 Download gff for BO16674.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13272608..13272766 155..313 98 <- Minus
arm_3R 13272968..13272996 126..154 100 <- Minus
arm_3R 13273073..13273191 6..125 96   Minus

BO16674.complete Sequence

325 bp assembled on 2006-10-11

GenBank Submission: FJ633884

> BO16674.complete
GAAGTTATCAGTCGACATGAACTGCAAGCCCTTGATTTTGTGCACCTTTG
TGGCAGTTGCAATGTGCCTGGTGCATTTTGGAAATGCATTGCCCGCCATA
AGTCATTATACGCACAAGAGATTTGACTCCATGGGTGGCATTGATTTTGT
TCAGGTGTGCCTTAACAACTGCGTCCAGTGCAAGACCATGCTGGGAGATT
ACTTCCAGGGGCAGACCTGTGCCCTTTCCTGCCTCAAGTTCAAGGGCAAA
GCCATCCCGGACTGCGAGGATATAGCCTCCATAGCCCCGTTTCTGAATGC
GCTCGAGGCAAGCTTTCTAGACCAT

BO16674.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-RB 294 CG5400-PB 1..291 17..307 1455 100 Plus
Eh-RA 294 CG5400-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-RB 700 CG5400-RB 159..450 16..307 1460 100 Plus
Eh-RA 704 CG5400-RA 163..454 16..307 1460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17446892..17447054 307..145 785 98.8 Minus
3R 32079331 3R 17447351..17447460 125..16 550 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:18:54 has no hits.

BO16674.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:20 Download gff for BO16674.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 1..294 17..310 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:12 Download gff for BO16674.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 824..1130 6..313 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:59 Download gff for BO16674.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 164..454 17..309 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:20 Download gff for BO16674.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 824..1130 6..313 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:39 Download gff for BO16674.complete
Subject Subject Range Query Range Percent Splice Strand
Eh-RA 164..454 17..309 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:39 Download gff for BO16674.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17446889..17447044 155..309 98 <- Minus
3R 17447246..17447274 126..154 100 <- Minus
3R 17447351..17447459 17..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:59 Download gff for BO16674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13272611..13272766 155..309 98 <- Minus
arm_3R 13272968..13272996 126..154 100 <- Minus
arm_3R 13273073..13273181 17..125 100   Minus

BO16674.pep Sequence

Translation from 16 to 325

> BO16674.pep
MNCKPLILCTFVAVAMCLVHFGNALPAISHYTHKRFDSMGGIDFVQVCLN
NCVQCKTMLGDYFQGQTCALSCLKFKGKAIPDCEDIASIAPFLNALEASF
LDH

BO16674.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
Eh-PB 97 CG5400-PB 1..97 1..97 530 100 Plus
Eh-PA 97 CG5400-PA 1..97 1..97 530 100 Plus