Clone Sequence Records
BO16676.5prime Sequence
302 bp (302 high quality bases) assembled on 2006-10-13
> BO16676.5prime
GAAGTTATCAGTCGACATGTCCGAATTGCAGGAATTCAACCAGGCGGCCG
AAGATGTTAAGAACCTAAACACCACACCCGGGGACAATGACCTTTTGGAG
CTCTACAGCTTGTACAAACAGGCCACTGTGGGGGATTGCAATACAGATAA
GCCCGGCTTTCTGGACTTCAAGGGCAAGGCCAAGTGGGAGGCGTGGAACA
ACCGCAAGGGAATGAGCAATACCGACGCCCAGGCCGCCTACATTACCAAG
GTCAAGGCACTGATCGCTGCCGTTGGCCTGAAGTCAGCAAGCTTTCTAGA
CC
BO16676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-PA | 273 | CG8498-RA | 1..270 | 17..286 | 1350 | 100 | Plus |
CG8627-PB | 261 | Dbi-RB | 151..182 | 170..201 | 135 | 96.8 | Plus |
CG8627-PA | 261 | Dbi-RA | 151..182 | 170..201 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-RB | 525 | CG8498-RB | 128..397 | 17..286 | 1350 | 100 | Plus |
CG8498-RA | 491 | CG8498-RA | 94..363 | 17..286 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8161924..8162071 | 286..139 | 725 | 99.3 | Minus |
2L | 23513712 | 2L | 8162123..8162240 | 146..29 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:42:28 has no hits.
BO16676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:03 Download gff for
BO16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-PA | 1..273 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:38 Download gff for
BO16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..363 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:56 Download gff for
BO16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..363 | 17..286 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:56 Download gff for
BO16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8161924..8162063 | 147..286 | 100 | <- | Minus |
2L | 8162123..8162237 | 32..146 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:38 Download gff for
BO16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8161924..8162063 | 147..286 | 100 | <- | Minus |
arm_2L | 8162123..8162237 | 32..146 | 100 | <- | Minus |
BO16676.3prime Sequence
302 bp (302 high quality bases) assembled on 2006-10-13
> BO16676.3prime
ATGGTCTAGAAAGCTTGCTGACTTCAGGCCAACGGCAGCGATCAGTGCCT
TGACCTTGGTAATGTAGGCGGCCTGGGCGTCGGTATTGCTCATTCCCTTG
CGGTTGTTCCACGCCTCCCACTTGGCCTTGCCCTTGAAGTCCAGAAAGCC
GGGCTTATCTGTATTGCAATCCCCCACAGTGGCCTGTTTGTACAAGCTGT
AGAGCTCCAAAAGGTCATTGTCCCCGGGTGTGGTGTTTAGGTTCTTAACA
TCTTCGGCCGCCTGGTTGAATTCCTGCAATTCGGACATGTCGACTGATAA
CT
BO16676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-PA | 273 | CG8498-RA | 1..270 | 288..19 | 1350 | 100 | Minus |
CG8627-PB | 261 | Dbi-RB | 151..182 | 135..104 | 135 | 96.8 | Minus |
CG8627-PA | 261 | Dbi-RA | 151..182 | 135..104 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-RB | 525 | CG8498-RB | 128..397 | 288..19 | 1350 | 100 | Minus |
CG8498-RA | 491 | CG8498-RA | 94..363 | 288..19 | 1350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8161924..8162071 | 19..166 | 725 | 99.3 | Plus |
2L | 23513712 | 2L | 8162123..8162240 | 159..276 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:34:42 has no hits.
BO16676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:02 Download gff for
BO16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-PA | 1..273 | 18..288 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:55 Download gff for
BO16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..363 | 19..288 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:05 Download gff for
BO16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..363 | 19..288 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:05 Download gff for
BO16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8161924..8162063 | 19..158 | 100 | <- | Plus |
2L | 8162123..8162237 | 159..273 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:55 Download gff for
BO16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8161924..8162063 | 19..158 | 100 | <- | Plus |
arm_2L | 8162123..8162237 | 159..273 | 100 | <- | Plus |
BO16676.complete Sequence
304 bp assembled on 2006-10-11
GenBank Submission: FJ633885
> BO16676.complete
GAAGTTATCAGTCGACATGTCCGAATTGCAGGAATTCAACCAGGCGGCCG
AAGATGTTAAGAACCTAAACACCACACCCGGGGACAATGACCTTTTGGAG
CTCTACAGCTTGTACAAACAGGCCACTGTGGGGGATTGCAATACAGATAA
GCCCGGCTTTCTGGACTTCAAGGGCAAGGCCAAGTGGGAGGCGTGGAACA
ACCGCAAGGGAATGAGCAATACCGACGCCCAGGCCGCCTACATTACCAAG
GTCAAGGCACTGATCGCTGCCGTTGGCCTGAAGTCAGCAAGCTTTCTAGA
CCAT
BO16676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-RB | 273 | CG8498-PB | 1..270 | 17..286 | 1350 | 100 | Plus |
CG8498-RA | 273 | CG8498-PA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-RB | 525 | CG8498-RB | 128..397 | 17..286 | 1350 | 100 | Plus |
CG8498-RA | 491 | CG8498-RA | 94..363 | 17..286 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8161924..8162071 | 286..139 | 725 | 99.3 | Minus |
2L | 23513712 | 2L | 8162123..8162240 | 146..29 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:31 has no hits.
BO16676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:08 Download gff for
BO16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 1..273 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:52 Download gff for
BO16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 65..334 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:55 Download gff for
BO16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..363 | 17..288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:08 Download gff for
BO16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 65..334 | 17..286 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:47 Download gff for
BO16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8498-RA | 94..363 | 17..288 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:47 Download gff for
BO16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8161922..8162063 | 147..288 | 98 | <- | Minus |
2L | 8162123..8162237 | 32..146 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:55 Download gff for
BO16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8161922..8162063 | 147..288 | 98 | <- | Minus |
arm_2L | 8162123..8162237 | 32..146 | 100 | <- | Minus |
BO16676.pep Sequence
Translation from 16 to 304
> BO16676.pep
MSELQEFNQAAEDVKNLNTTPGDNDLLELYSLYKQATVGDCNTDKPGFLD
FKGKAKWEAWNNRKGMSNTDAQAAYITKVKALIAAVGLKSASFLDH
BO16676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8498-PB | 90 | CG8498-PB | 1..90 | 1..90 | 470 | 100 | Plus |
CG8498-PA | 90 | CG8498-PA | 1..90 | 1..90 | 470 | 100 | Plus |
Dbi-PA | 86 | CG8627-PA | 4..83 | 5..84 | 251 | 58.8 | Plus |
Dbi-PB | 86 | CG8627-PB | 4..83 | 5..84 | 251 | 58.8 | Plus |
CG8629-PA | 84 | CG8629-PA | 4..73 | 7..76 | 206 | 55.7 | Plus |