Clone Sequence Records
BO16681.3prime Sequence
314 bp (314 high quality bases) assembled on 2006-10-13
> BO16681.3prime
ATGGTCTAGAAAGCTTGCATTCAAGAAAAATTCGATAAGGTTGGTCAGCC
GGCGCATGTTGACGTAGTTGACCAGCACGGCGTATGCATAACAGGTGTAG
ATGTAGGCCCACCATTGGAAGTGATACGGCTCCTTGGATCCACCGCCACC
ACGAAGACGTCCGAAACCCATGTAACCATTGCCTTGCAGGATGTGGGCGT
GGTGCCGTTCGGTGAGAAGGCGACGGAATACCGCTCCGCTCAGGTAAACG
ACCGTCAGCAGCAAAATAAGGCGCCGCAGGTGCACCAGTAGCAGAACCAT
GTCGACTGATAACT
BO16681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13306-PA | 285 | CG13306-RA | 1..282 | 300..19 | 1410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13306-RA | 531 | CG13306-RA | 111..392 | 300..19 | 1410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8749278..8749559 | 19..300 | 1410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:04:36 has no hits.
BO16681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:08 Download gff for
BO16681.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-PA | 1..285 | 15..300 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:47 Download gff for
BO16681.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 111..400 | 11..300 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:41 Download gff for
BO16681.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 111..400 | 11..300 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:41 Download gff for
BO16681.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8749270..8749559 | 11..300 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:47 Download gff for
BO16681.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8742370..8742659 | 11..300 | 98 | | Plus |
BO16681.5prime Sequence
314 bp (314 high quality bases) assembled on 2006-10-13
> BO16681.5prime
GAAGTTATCAGTCGACATGGTTCTGCTACTGGTGCACCTGCGGCGCCTTA
TTTTGCTGCTGACGGTCGTTTACCTGAGCGGAGCGGTATTCCGTCGCCTT
CTCACCGAACGGCACCACGCCCACATCCTGCAAGGCAATGGTTACATGGG
TTTCGGACGTCTTCGTGGTGGCGGTGGATCCAAGGAGCCGTATCACTTCC
AATGGTGGGCCTACATCTACACCTGTTATGCATACGCCGTGCTGGTCAAC
TACGTCAACATGCGCCGGCTGACCAACCTTATCGAATTTTTCTTGAATGC
AAGCTTTCTAGACC
BO16681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13306-PA | 285 | CG13306-RA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13306-RA | 531 | CG13306-RA | 111..392 | 17..298 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8749278..8749559 | 298..17 | 1410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:07:24 has no hits.
BO16681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:09 Download gff for
BO16681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-PA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:27 Download gff for
BO16681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 111..400 | 17..306 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:22 Download gff for
BO16681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 111..400 | 17..306 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:22 Download gff for
BO16681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8749270..8749559 | 17..306 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:27 Download gff for
BO16681.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8742370..8742659 | 17..306 | 98 | | Minus |
BO16681.complete Sequence
316 bp assembled on 2006-10-11
GenBank Submission: FJ633887
> BO16681.complete
GAAGTTATCAGTCGACATGGTTCTGCTACTGGTGCACCTGCGGCGCCTTA
TTTTGCTGCTGACGGTCGTTTACCTGAGCGGAGCGGTATTCCGTCGCCTT
CTCACCGAACGGCACCACGCCCACATCCTGCAAGGCAATGGTTACATGGG
TTTCGGACGTCTTCGTGGTGGCGGTGGATCCAAGGAGCCGTATCACTTCC
AATGGTGGGCCTACATCTACACCTGTTATGCATACGCCGTGCTGGTCAAC
TACGTCAACATGCGCCGGCTGACCAACCTTATCGAATTTTTCTTGAATGC
AAGCTTTCTAGACCAT
BO16681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13306-RA | 285 | CG13306-PA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13306-RA | 531 | CG13306-RA | 111..392 | 17..298 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8749278..8749559 | 298..17 | 1410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:58:22 has no hits.
BO16681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:12 Download gff for
BO16681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:59 Download gff for
BO16681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 111..400 | 17..306 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:32 Download gff for
BO16681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 111..392 | 17..300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:13 Download gff for
BO16681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 111..400 | 17..306 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:47 Download gff for
BO16681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13306-RA | 111..392 | 17..300 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:47 Download gff for
BO16681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8749276..8749559 | 17..300 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:32 Download gff for
BO16681.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8742376..8742659 | 17..300 | 99 | | Minus |
BO16681.pep Sequence
Translation from 16 to 316
> BO16681.pep
MVLLLVHLRRLILLLTVVYLSGAVFRRLLTERHHAHILQGNGYMGFGRLR
GGGGSKEPYHFQWWAYIYTCYAYAVLVNYVNMRRLTNLIEFFLNASFLDH
BO16681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13306-PA | 94 | CG13306-PA | 1..94 | 1..94 | 502 | 100 | Plus |
