Clone Sequence Records
BO16687.3prime Sequence
278 bp (278 high quality bases) assembled on 2006-10-13
> BO16687.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCTGCTTGCCCTCCGCCTCCTCCATAG
CACGCATCATTTTGGCGTCGTGCTGGGCGTGGTGTTCACGGATTGCCCGC
TGCAGCTCCTCGTGGTGGCTTTTGCTTTCCGGCGGATAAAGTTCCCGCTT
CTTCTTGGTCACCCATTCTTCAAAGTATTCCGGCTGGTTAAACAAGTGGA
ATAGCGTCACCGGAAAGGCCATGTACATGCCCATCTTGGCCACCTCCAGC
ACCCAGGTTCCCATGTCGACTGATAACT
BO16687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14483-PA | 249 | CG14483-RA | 1..246 | 264..19 | 1230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14483-RC | 955 | CG14483-RC | 108..357 | 268..19 | 1235 | 99.6 | Minus |
CG14483-RB | 437 | CG14483-RB | 30..279 | 268..19 | 1235 | 99.6 | Minus |
CG14483-RA | 515 | CG14483-RA | 108..357 | 268..19 | 1235 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17585793..17586042 | 19..268 | 1235 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:48:02 has no hits.
BO16687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:12 Download gff for
BO16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-PA | 1..249 | 18..264 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:02 Download gff for
BO16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 101..357 | 19..278 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:18 Download gff for
BO16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 101..357 | 19..278 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:18 Download gff for
BO16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17585793..17586049 | 19..278 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:02 Download gff for
BO16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13473298..13473554 | 19..278 | 98 | | Plus |
BO16687.5prime Sequence
278 bp (278 high quality bases) assembled on 2006-10-13
> BO16687.5prime
GAAGTTATCAGTCGACATGGGAACCTGGGTGCTGGAGGTGGCCAAGATGG
GCATGTACATGGCCTTTCCGGTGACGCTATTCCACTTGTTTAACCAGCCG
GAATACTTTGAAGAATGGGTGACCAAGAAGAAGCGGGAACTTTATCCGCC
GGAAAGCAAAAGCCACCACGAGGAGCTGCAGCGGGCAATCCGTGAACACC
ACGCCCAGCACGACGCCAAAATGATGCGTGCTATGGAGGAGGCGGAGGGC
AAGCAGAAGAAGGCAAGCTTTCTAGACC
BO16687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14483-PA | 249 | CG14483-RA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14483-RC | 955 | CG14483-RC | 108..357 | 13..262 | 1235 | 99.6 | Plus |
CG14483-RB | 437 | CG14483-RB | 30..279 | 13..262 | 1235 | 99.6 | Plus |
CG14483-RA | 515 | CG14483-RA | 108..357 | 13..262 | 1235 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17585793..17586042 | 262..13 | 1235 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:51:20 has no hits.
BO16687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:12 Download gff for
BO16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-PA | 1..249 | 17..263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:51 Download gff for
BO16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 102..357 | 5..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:08 Download gff for
BO16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 102..357 | 5..262 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:08 Download gff for
BO16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17585793..17586048 | 5..262 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:51 Download gff for
BO16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13473298..13473553 | 5..262 | 98 | | Minus |
BO16687.complete Sequence
280 bp assembled on 2006-10-11
GenBank Submission: FJ633888
> BO16687.complete
GAAGTTATCAGTCGACATGGGAACCTGGGTGCTGGAGGTGGCCAAGATGG
GCATGTACATGGCCTTTCCGGTGACGCTATTCCACTTGTTTAACCAGCCG
GAATACTTTGAAGAATGGGTGACCAAGAAGAAGCGGGAACTTTATCCGCC
GGAAAGCAAAAGCCACCACGAGGAGCTGCAGCGGGCAATCCGTGAACACC
ACGCCCAGCACGACGCCAAAATGATGCGTGCTATGGAGGAGGCGGAGGGC
AAGCAGAAGAAGGCAAGCTTTCTAGACCAT
BO16687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14483-RC | 249 | CG14483-PC | 1..246 | 17..262 | 1230 | 100 | Plus |
CG14483-RB | 249 | CG14483-PB | 1..246 | 17..262 | 1230 | 100 | Plus |
CG14483-RA | 249 | CG14483-PA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14483-RC | 955 | CG14483-RC | 108..357 | 13..262 | 1235 | 99.6 | Plus |
CG14483-RB | 437 | CG14483-RB | 30..279 | 13..262 | 1235 | 99.6 | Plus |
CG14483-RA | 515 | CG14483-RA | 108..357 | 13..262 | 1235 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:36:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17585793..17586042 | 262..13 | 1235 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:36:28 has no hits.
BO16687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:48 Download gff for
BO16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 1..249 | 17..263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:23 Download gff for
BO16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 43..298 | 5..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:27 Download gff for
BO16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 112..357 | 17..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:48 Download gff for
BO16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 43..298 | 5..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:59 Download gff for
BO16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14483-RA | 112..357 | 17..264 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:59 Download gff for
BO16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17585791..17586038 | 17..264 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:27 Download gff for
BO16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13473296..13473543 | 17..264 | 99 | | Minus |
BO16687.pep Sequence
Translation from 16 to 280
> BO16687.pep
MGTWVLEVAKMGMYMAFPVTLFHLFNQPEYFEEWVTKKKRELYPPESKSH
HEELQRAIREHHAQHDAKMMRAMEEAEGKQKKASFLDH
BO16687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14483-PC | 82 | CG14483-PC | 1..82 | 1..82 | 444 | 100 | Plus |
CG14483-PB | 82 | CG14483-PB | 1..82 | 1..82 | 444 | 100 | Plus |
CG14483-PA | 82 | CG14483-PA | 1..82 | 1..82 | 444 | 100 | Plus |