Clone Sequence Records
BO16691.3prime Sequence
536 bp (516 high quality bases) assembled on 2006-10-13
> BO16691.3prime
ATGGTCTAGAAAGCTTGCGACCTGTCCTGCAGTTCCACGGAACTCTATGC
AAATGGGAACTGGGCGCCTTACATTGCGCTTATCGAAGGCCTCTATTTGG
ACCACCAGCTTGTAGCGCCCATCCAGATTCGGAACATTCAAGCTGGTCTT
CAAGTCCAGTTCGTAGTCTTTGTACTTTAAAACGGCCCCTGGTGTGGTCA
AGCACTTTTCCTTAATCTCGTCGGAGTTGCTAATATACTTTGTCCAGAAA
TTATACCAGTATTGGTTCTTATCAAACATGTTTTTGCAAAAGTTATTGGA
GCTGGCCGTAAACATAGTCTTCTGCCAAGTGCCCTTATCCAGGCGATAGA
CTTGACCAAATACCTTTAATGTGTCTCCAGGCTGGACATCTTTCCAGACC
ACTTTCTGCTCTCCTTCAATTCGAACTTTCGAACCAAGGTTATGTACTTT
AAGGGAGGAAGTATCCACCATCGCTTCAAAACCAGAAGGATTTCCGGGCT
GATTCTCGCATGGTGCTAACAAGCCATCTTTGTCCA
BO16691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33348-PA | 597 | CheB42a-RA | 77..594 | 536..19 | 2590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-RA | 693 | CG33348-RA | 100..617 | 536..19 | 2590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6949802..6949981 | 365..186 | 900 | 100 | Minus |
2R | 25286936 | 2R | 6949581..6949754 | 536..363 | 870 | 100 | Minus |
2R | 25286936 | 2R | 6950040..6950208 | 187..19 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:07:27 has no hits.
BO16691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:16 Download gff for
BO16691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33348-PA | 78..597 | 15..535 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:29 Download gff for
BO16691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 101..620 | 15..535 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:30 Download gff for
BO16691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 101..620 | 15..535 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:30 Download gff for
BO16691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6949582..6949753 | 364..535 | 100 | -> | Minus |
2R | 6949804..6949980 | 187..363 | 100 | -> | Minus |
2R | 6950041..6950211 | 15..186 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:29 Download gff for
BO16691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2837087..2837258 | 364..535 | 100 | -> | Minus |
arm_2R | 2837309..2837485 | 187..363 | 100 | -> | Minus |
arm_2R | 2837546..2837716 | 15..186 | 98 | | Minus |
BO16691.5prime Sequence
617 bp (527 high quality bases) assembled on 2006-10-13
> BO16691.5prime
GAAGTTATCAGTCGACATGAAGGCTACTTTTACAATCCTGGTGCTCCAAG
TGGTCATCTGTTTGGCTGGAGCGACTGAGTACCAGTTAACATTGGACAAA
GATGGCTTGTTAGCACCATGCGAGAATCAGCCCGGAAATCCTTCTGGTTT
TGAAGCGATGGTGGATACTTCCTCCCTTAAAGTACATAACCTTGGTTCGA
AAGTTCGAATTGAAGGAGAGCAGAAAGTGGTCTGGAAAGATGTCCAGCCT
GGAGACACATTAAAGGTATTTGGTCAAGTCTATCGCCTGGATAAGGGCAC
TTGGCAGAAGACTATGTTTACGGCCAGCTCCAATAACTTTTGCAAAAACA
TGTTTGATAAGAACCAATACTGGTATAATTTCTGGACAAAGTATATTAGC
AACTCCGACGAGATTAAGGAAAAGTGCTTGACCACACCAGGGGCCGTTTT
AAAGTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGA
ATCTGGATGGGCGCTACAAGCTGGTGGTCAAATAGAGGCCTTCGATAAGC
GCAATGTAAGGCGCCCAGTTCCCATTTGCATAAAGTTCCGTGAAACTGCA
GGACAAGTCGCAAGCTT
BO16691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33348-PA | 597 | CheB42a-RA | 1..513 | 17..529 | 2565 | 100 | Plus |
CG33348-PA | 597 | CheB42a-RA | 514..590 | 529..605 | 335 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-RA | 693 | CG33348-RA | 24..617 | 17..609 | 2900 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6949505..6949754 | 17..266 | 1250 | 100 | Plus |
2R | 25286936 | 2R | 6949802..6949981 | 264..443 | 900 | 100 | Plus |
2R | 25286936 | 2R | 6950040..6950208 | 442..609 | 750 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:27:04 has no hits.
BO16691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:17 Download gff for
BO16691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33348-PA | 1..597 | 17..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:01 Download gff for
BO16691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 11..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:20 Download gff for
BO16691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 11..613 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:20 Download gff for
BO16691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6949499..6949753 | 11..265 | 98 | -> | Plus |
2R | 6949804..6949980 | 266..442 | 100 | -> | Plus |
2R | 6950041..6950211 | 443..613 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:01 Download gff for
BO16691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2837004..2837258 | 11..265 | 98 | -> | Plus |
arm_2R | 2837309..2837485 | 266..442 | 100 | -> | Plus |
arm_2R | 2837546..2837716 | 443..613 | 96 | | Plus |
BO16691.complete Sequence
628 bp assembled on 2006-10-11
GenBank Submission: FJ633889
> BO16691.complete
GAAGTTATCAGTCGACATGAAGGCTACTTTTACAATCCTGGTGCTCCAAG
TGGTCATCTGTTTGGCTGGAGCGACTGAGTACCAGTTAACATTGGACAAA
GATGGCTTGTTAGCACCATGCGAGAATCAGCCCGGAAATCCTTCTGGTTT
TGAAGCGATGGTGGATACTTCCTCCCTTAAAGTACATAACCTTGGTTCGA
AAGTTCGAATTGAAGGAGAGCAGAAAGTGGTCTGGAAAGATGTCCAGCCT
GGAGACACATTAAAGGTATTTGGTCAAGTCTATCGCCTGGATAAGGGCAC
TTGGCAGAAGACTATGTTTACGGCCAGCTCCAATAACTTTTGCAAAAACA
TGTTTGATAAGAACCAATACTGGTATAATTTCTGGACAAAGTATATTAGC
AACTCCGACGAGATTAAGGAAAAGTGCTTGACCACACCAGGGGCCGTTTT
AAAGTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGA
ATCTGGATGGGCGCTACAAGCTGGTGGTCCAAATAGAGGCCTTCGATAAG
CGCAATGTAAGGCGCCCAGTTCCCATTTGCATAGAGTTCCGTGGAACTGC
AGGACAGGTCGCAAGCTTTCTAGACCAT
BO16691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-RA | 597 | CG33348-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-RA | 693 | CG33348-RA | 24..617 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6949505..6949754 | 17..266 | 1250 | 100 | Plus |
2R | 25286936 | 2R | 6949802..6949981 | 264..443 | 900 | 100 | Plus |
2R | 25286936 | 2R | 6950040..6950208 | 442..610 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:46:13 has no hits.
BO16691.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:55 Download gff for
BO16691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 1..597 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:14 Download gff for
BO16691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 11..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:11 Download gff for
BO16691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 24..617 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:55 Download gff for
BO16691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 18..620 | 11..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:50 Download gff for
BO16691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CheB42a-RA | 24..617 | 17..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:50 Download gff for
BO16691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6949505..6949753 | 17..265 | 100 | -> | Plus |
2R | 6949804..6949980 | 266..442 | 100 | -> | Plus |
2R | 6950041..6950208 | 443..612 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:11 Download gff for
BO16691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2837010..2837258 | 17..265 | 100 | -> | Plus |
arm_2R | 2837309..2837485 | 266..442 | 100 | -> | Plus |
arm_2R | 2837546..2837713 | 443..612 | 98 | | Plus |
BO16691.pep Sequence
Translation from 16 to 628
> BO16691.pep
MKATFTILVLQVVICLAGATEYQLTLDKDGLLAPCENQPGNPSGFEAMVD
TSSLKVHNLGSKVRIEGEQKVVWKDVQPGDTLKVFGQVYRLDKGTWQKTM
FTASSNNFCKNMFDKNQYWYNFWTKYISNSDEIKEKCLTTPGAVLKYKDY
ELDLKTSLNVPNLDGRYKLVVQIEAFDKRNVRRPVPICIEFRGTAGQVAS
FLDH
BO16691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CheB42a-PA | 198 | CG33348-PA | 1..198 | 1..198 | 1053 | 100 | Plus |
CheB42b-PA | 196 | CG33351-PA | 4..190 | 7..193 | 363 | 35.6 | Plus |
CheB38b-PA | 197 | CG33321-PA | 5..196 | 7..198 | 351 | 34.7 | Plus |
CheB42c-PB | 196 | CG33350-PB | 3..195 | 6..198 | 333 | 33.5 | Plus |
CheB53b-PA | 204 | CG33524-PA | 11..196 | 7..193 | 316 | 32.1 | Plus |