Clone BO16691 Report

Search the DGRC for BO16691

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCheB42a-RA
Protein status:BO16691.pep: validated full length
Sequenced Size:628

Clone Sequence Records

BO16691.3prime Sequence

536 bp (516 high quality bases) assembled on 2006-10-13

> BO16691.3prime
ATGGTCTAGAAAGCTTGCGACCTGTCCTGCAGTTCCACGGAACTCTATGC
AAATGGGAACTGGGCGCCTTACATTGCGCTTATCGAAGGCCTCTATTTGG
ACCACCAGCTTGTAGCGCCCATCCAGATTCGGAACATTCAAGCTGGTCTT
CAAGTCCAGTTCGTAGTCTTTGTACTTTAAAACGGCCCCTGGTGTGGTCA
AGCACTTTTCCTTAATCTCGTCGGAGTTGCTAATATACTTTGTCCAGAAA
TTATACCAGTATTGGTTCTTATCAAACATGTTTTTGCAAAAGTTATTGGA
GCTGGCCGTAAACATAGTCTTCTGCCAAGTGCCCTTATCCAGGCGATAGA
CTTGACCAAATACCTTTAATGTGTCTCCAGGCTGGACATCTTTCCAGACC
ACTTTCTGCTCTCCTTCAATTCGAACTTTCGAACCAAGGTTATGTACTTT
AAGGGAGGAAGTATCCACCATCGCTTCAAAACCAGAAGGATTTCCGGGCT
GATTCTCGCATGGTGCTAACAAGCCATCTTTGTCCA

BO16691.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG33348-PA 597 CheB42a-RA 77..594 536..19 2590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-RA 693 CG33348-RA 100..617 536..19 2590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6949802..6949981 365..186 900 100 Minus
2R 25286936 2R 6949581..6949754 536..363 870 100 Minus
2R 25286936 2R 6950040..6950208 187..19 845 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:27 has no hits.

BO16691.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:16 Download gff for BO16691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33348-PA 78..597 15..535 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:29 Download gff for BO16691.3prime
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 101..620 15..535 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:30 Download gff for BO16691.3prime
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 101..620 15..535 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:30 Download gff for BO16691.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6949582..6949753 364..535 100 -> Minus
2R 6949804..6949980 187..363 100 -> Minus
2R 6950041..6950211 15..186 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:29 Download gff for BO16691.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2837087..2837258 364..535 100 -> Minus
arm_2R 2837309..2837485 187..363 100 -> Minus
arm_2R 2837546..2837716 15..186 98   Minus

BO16691.5prime Sequence

617 bp (527 high quality bases) assembled on 2006-10-13

> BO16691.5prime
GAAGTTATCAGTCGACATGAAGGCTACTTTTACAATCCTGGTGCTCCAAG
TGGTCATCTGTTTGGCTGGAGCGACTGAGTACCAGTTAACATTGGACAAA
GATGGCTTGTTAGCACCATGCGAGAATCAGCCCGGAAATCCTTCTGGTTT
TGAAGCGATGGTGGATACTTCCTCCCTTAAAGTACATAACCTTGGTTCGA
AAGTTCGAATTGAAGGAGAGCAGAAAGTGGTCTGGAAAGATGTCCAGCCT
GGAGACACATTAAAGGTATTTGGTCAAGTCTATCGCCTGGATAAGGGCAC
TTGGCAGAAGACTATGTTTACGGCCAGCTCCAATAACTTTTGCAAAAACA
TGTTTGATAAGAACCAATACTGGTATAATTTCTGGACAAAGTATATTAGC
AACTCCGACGAGATTAAGGAAAAGTGCTTGACCACACCAGGGGCCGTTTT
AAAGTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGA
ATCTGGATGGGCGCTACAAGCTGGTGGTCAAATAGAGGCCTTCGATAAGC
GCAATGTAAGGCGCCCAGTTCCCATTTGCATAAAGTTCCGTGAAACTGCA
GGACAAGTCGCAAGCTT

BO16691.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33348-PA 597 CheB42a-RA 1..513 17..529 2565 100 Plus
CG33348-PA 597 CheB42a-RA 514..590 529..605 335 97.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-RA 693 CG33348-RA 24..617 17..609 2900 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6949505..6949754 17..266 1250 100 Plus
2R 25286936 2R 6949802..6949981 264..443 900 100 Plus
2R 25286936 2R 6950040..6950208 442..609 750 97.6 Plus
Blast to na_te.dros performed on 2015-02-10 17:27:04 has no hits.

BO16691.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:17 Download gff for BO16691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33348-PA 1..597 17..613 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:01 Download gff for BO16691.5prime
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 11..613 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:20 Download gff for BO16691.5prime
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 11..613 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:20 Download gff for BO16691.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6949499..6949753 11..265 98 -> Plus
2R 6949804..6949980 266..442 100 -> Plus
2R 6950041..6950211 443..613 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:01 Download gff for BO16691.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2837004..2837258 11..265 98 -> Plus
arm_2R 2837309..2837485 266..442 100 -> Plus
arm_2R 2837546..2837716 443..613 96   Plus

BO16691.complete Sequence

628 bp assembled on 2006-10-11

GenBank Submission: FJ633889

> BO16691.complete
GAAGTTATCAGTCGACATGAAGGCTACTTTTACAATCCTGGTGCTCCAAG
TGGTCATCTGTTTGGCTGGAGCGACTGAGTACCAGTTAACATTGGACAAA
GATGGCTTGTTAGCACCATGCGAGAATCAGCCCGGAAATCCTTCTGGTTT
TGAAGCGATGGTGGATACTTCCTCCCTTAAAGTACATAACCTTGGTTCGA
AAGTTCGAATTGAAGGAGAGCAGAAAGTGGTCTGGAAAGATGTCCAGCCT
GGAGACACATTAAAGGTATTTGGTCAAGTCTATCGCCTGGATAAGGGCAC
TTGGCAGAAGACTATGTTTACGGCCAGCTCCAATAACTTTTGCAAAAACA
TGTTTGATAAGAACCAATACTGGTATAATTTCTGGACAAAGTATATTAGC
AACTCCGACGAGATTAAGGAAAAGTGCTTGACCACACCAGGGGCCGTTTT
AAAGTACAAAGACTACGAACTGGACTTGAAGACCAGCTTGAATGTTCCGA
ATCTGGATGGGCGCTACAAGCTGGTGGTCCAAATAGAGGCCTTCGATAAG
CGCAATGTAAGGCGCCCAGTTCCCATTTGCATAGAGTTCCGTGGAACTGC
AGGACAGGTCGCAAGCTTTCTAGACCAT

BO16691.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-RA 597 CG33348-PA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-RA 693 CG33348-RA 24..617 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6949505..6949754 17..266 1250 100 Plus
2R 25286936 2R 6949802..6949981 264..443 900 100 Plus
2R 25286936 2R 6950040..6950208 442..610 845 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:46:13 has no hits.

BO16691.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:55 Download gff for BO16691.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 1..597 17..614 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:14 Download gff for BO16691.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 11..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:11 Download gff for BO16691.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 24..617 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:55 Download gff for BO16691.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 18..620 11..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:50 Download gff for BO16691.complete
Subject Subject Range Query Range Percent Splice Strand
CheB42a-RA 24..617 17..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:50 Download gff for BO16691.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6949505..6949753 17..265 100 -> Plus
2R 6949804..6949980 266..442 100 -> Plus
2R 6950041..6950208 443..612 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:11 Download gff for BO16691.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2837010..2837258 17..265 100 -> Plus
arm_2R 2837309..2837485 266..442 100 -> Plus
arm_2R 2837546..2837713 443..612 98   Plus

BO16691.pep Sequence

Translation from 16 to 628

> BO16691.pep
MKATFTILVLQVVICLAGATEYQLTLDKDGLLAPCENQPGNPSGFEAMVD
TSSLKVHNLGSKVRIEGEQKVVWKDVQPGDTLKVFGQVYRLDKGTWQKTM
FTASSNNFCKNMFDKNQYWYNFWTKYISNSDEIKEKCLTTPGAVLKYKDY
ELDLKTSLNVPNLDGRYKLVVQIEAFDKRNVRRPVPICIEFRGTAGQVAS
FLDH

BO16691.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CheB42a-PA 198 CG33348-PA 1..198 1..198 1053 100 Plus
CheB42b-PA 196 CG33351-PA 4..190 7..193 363 35.6 Plus
CheB38b-PA 197 CG33321-PA 5..196 7..198 351 34.7 Plus
CheB42c-PB 196 CG33350-PB 3..195 6..198 333 33.5 Plus
CheB53b-PA 204 CG33524-PA 11..196 7..193 316 32.1 Plus