Clone Sequence Records
BO16692.3prime Sequence
299 bp (299 high quality bases) assembled on 2006-10-13
> BO16692.3prime
ATGGTCTAGAAAGCTTGCAAGGTTCATCGGTTTGGTGAGGATCCAAGCGA
GCAGCGAAATCTGGTTTCCCTGGCGCCTCAGAATGGCGCTTTCGATGCCA
TCGTGCAGATTGATTTGCACTTGGGCAAAGAATTCCGGATCGTTACGTTG
GTACTGGCTGCCCAGGAAGATGTTCAGCTCTGTGTCAGTCATGGGTCGGC
TAGTATGCTCCAGGACCATTATAATGGACTTAAGTAGGTTGGGTACCAAC
CGACGTTTCGGCAGTGTCGTGAAGATGTCGGCCATGTCGACTGATAACT
BO16692.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15578-PA | 270 | CG15578-RA | 1..267 | 285..19 | 1335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15578-RA | 415 | CG15578-RA | 98..366 | 287..19 | 1345 | 100 | Minus |
CG15577-RA | 508 | CG15577-RA | 139..338 | 250..51 | 475 | 82.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4277596..4277864 | 19..287 | 1345 | 100 | Plus |
X | 23542271 | X | 4276663..4276862 | 51..250 | 475 | 82.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:36:26 has no hits.
BO16692.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:18 Download gff for
BO16692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-PA | 1..270 | 16..285 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:11 Download gff for
BO16692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 98..370 | 15..287 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:19 Download gff for
BO16692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 98..370 | 15..287 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:19 Download gff for
BO16692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4277591..4277864 | 15..287 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:11 Download gff for
BO16692.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4171624..4171897 | 15..287 | 99 | | Plus |
BO16692.5prime Sequence
299 bp (299 high quality bases) assembled on 2006-10-13
> BO16692.5prime
GAAGTTATCAGTCGACATGGCCGACATCTTCACGACACTGCCGAAACGTC
GGTTGGTACCCAACCTACTTAAGTCCATTATAATGGTCCTGGAGCATACT
AGCCGACCCATGACTGACACAGAGCTGAACATCTTCCTGGGCAGCCAGTA
CCAACGTAACGATCCGGAATTCTTTGCCCAAGTGCAAATCAATCTGCACG
ATGGCATCGAAAGCGCCATTCTGAGGCGCCAGGGAAACCAGATTTCGCTG
CTCGCTTGGATCCTCACCAAACCGATGAACCTTGCAAGCTTTCTAGACC
BO16692.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15578-PA | 270 | CG15578-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15578-RA | 415 | CG15578-RA | 98..366 | 15..283 | 1345 | 100 | Plus |
CG15577-RA | 508 | CG15577-RA | 139..338 | 52..251 | 475 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4277596..4277864 | 283..15 | 1345 | 100 | Minus |
X | 23542271 | X | 4276663..4276862 | 251..52 | 475 | 82.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:51:29 has no hits.
BO16692.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:19 Download gff for
BO16692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-PA | 1..270 | 17..286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:53 Download gff for
BO16692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 98..370 | 15..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:28 Download gff for
BO16692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 98..370 | 15..287 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:28 Download gff for
BO16692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4277591..4277864 | 15..287 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:53 Download gff for
BO16692.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4171624..4171897 | 15..287 | 99 | | Minus |
BO16692.complete Sequence
301 bp assembled on 2006-10-11
GenBank Submission: FJ633890
> BO16692.complete
GAAGTTATCAGTCGACATGGCCGACATCTTCACGACACTGCCGAAACGTC
GGTTGGTACCCAACCTACTTAAGTCCATTATAATGGTCCTGGAGCATACT
AGCCGACCCATGACTGACACAGAGCTGAACATCTTCCTGGGCAGCCAGTA
CCAACGTAACGATCCGGAATTCTTTGCCCAAGTGCAAATCAATCTGCACG
ATGGCATCGAAAGCGCCATTCTGAGGCGCCAGGGAAACCAGATTTCGCTG
CTCGCTTGGATCCTCACCAAACCGATGAACCTTGCAAGCTTTCTAGACCA
T
BO16692.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15578-RA | 270 | CG15578-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
CG15577-RA | 300 | CG15577-PA | 45..244 | 52..251 | 475 | 82.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15578-RA | 415 | CG15578-RA | 98..366 | 15..283 | 1345 | 100 | Plus |
CG15577-RA | 508 | CG15577-RA | 139..338 | 52..251 | 475 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4277596..4277864 | 283..15 | 1345 | 100 | Minus |
X | 23542271 | X | 4276663..4276862 | 251..52 | 475 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:12:56 has no hits.
BO16692.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:15 Download gff for
BO16692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 1..270 | 17..286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:02 Download gff for
BO16692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 1..270 | 17..286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:56 Download gff for
BO16692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 100..366 | 17..285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:15 Download gff for
BO16692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 1..270 | 17..286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:35 Download gff for
BO16692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15578-RA | 100..366 | 17..285 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:35 Download gff for
BO16692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4277593..4277862 | 17..285 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:56 Download gff for
BO16692.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4171626..4171895 | 17..285 | 99 | | Minus |
BO16692.pep Sequence
Translation from 16 to 301
> BO16692.pep
MADIFTTLPKRRLVPNLLKSIIMVLEHTSRPMTDTELNIFLGSQYQRNDP
EFFAQVQINLHDGIESAILRRQGNQISLLAWILTKPMNLASFLDH
BO16692.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15578-PA | 89 | CG15578-PA | 1..89 | 1..89 | 452 | 100 | Plus |
CG15577-PA | 99 | CG15577-PA | 9..81 | 7..78 | 254 | 68.5 | Plus |