Clone Sequence Records
BO16694.3prime Sequence
750 bp (666 high quality bases) assembled on 2006-10-13
> BO16694.3prime
ATGGTCTAGAAAGCTTGCTATGTCCTTCAAGTGCAAAAACTTTCCCTCAT
CACTGCTCAAGCCACAAGGTCGCCTGAATTCCTGGGCACCCACATGGAAC
CACTCATTGCAAATCCACTTTGATCCTTGAAGAACGGGGCAACCAGCATG
CTTCGTGCGAAAGTCCTTGTGGGTGGAACTGTGCAGATTGTACCAGATTA
AAAGACTTCCCTTCACCGGCGGAACAGCCAATCGGAGGAAGGGAAAGGCT
GTGGCTCCTCCCAGAGCAACATCATTTAGGTAGAAAAGAGCTGTCAACAG
GCGGTTGCCCTTCCAGCTGAAAACACTTTGACCATCGTCCTCCACGAAGT
CAAAGTGCGGCTCATACTGTCCCCCAATTCCGTAGTTGACCAGCTGCAGG
GGCTCCGCACTTTCCGTGCTCAGTCCGGTGACATCCTCCAATCGCTGTTT
AATCTTGGAAAGCCATGGATTCGCATCGTACCATAGCCAGGTGTTGCGAC
TTATCCGGACCTCACTTGTGGTAGAGTTCTCACTTTGACCCACCTTTGAA
CGCTCCATATTACCCTTGCCGTGCTCCATGATCGTATCTATCTCGCTGTC
CCACAGAACTTCGTGAACGTAGGCGACATAAGGGTCGACATTCAATTGCT
CGATTTTGAAAGGGGAAAGACGATAGTAGGGAACTCCCTGGTGGTAGAGC
CAGCACCTCAAATTCCGCTGCTCCCGCGGAGATTGATGGAGTTCTCATCG
BO16694.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31014-PA | 1623 | PH4alphaSG1-RA | 893..1620 | 746..19 | 3640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG1-RA | 1708 | CG31014-RA | 920..1651 | 750..19 | 3645 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30504213..30504624 | 339..750 | 2045 | 99.8 | Plus |
3R | 32079331 | 3R | 30503871..30504036 | 114..279 | 830 | 100 | Plus |
3R | 32079331 | 3R | 30503722..30503816 | 19..113 | 475 | 100 | Plus |
3R | 32079331 | 3R | 30504091..30504156 | 276..341 | 315 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:01:41 has no hits.
BO16694.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:21 Download gff for
BO16694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31014-PA | 889..1623 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:16:12 Download gff for
BO16694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 920..1654 | 15..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:34 Download gff for
BO16694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 920..1654 | 15..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:34 Download gff for
BO16694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30503718..30503816 | 15..113 | 97 | <- | Plus |
3R | 30503871..30504036 | 114..279 | 100 | <- | Plus |
3R | 30504095..30504154 | 280..339 | 100 | <- | Plus |
3R | 30504214..30504624 | 340..750 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:16:12 Download gff for
BO16694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26329936..26330346 | 340..750 | 99 | | Plus |
arm_3R | 26329440..26329538 | 15..113 | 97 | <- | Plus |
arm_3R | 26329593..26329758 | 114..279 | 100 | <- | Plus |
arm_3R | 26329817..26329876 | 280..339 | 100 | <- | Plus |
BO16694.5prime Sequence
746 bp (700 high quality bases) assembled on 2006-10-13
> BO16694.5prime
GAAGTTATCAGTCGACATGTTCCGGCTAAGTATTATTTTATCGTTGCTCT
GCGTATTCCCAGTCAATGGAGATTACTACTCGGCTATAAGTGAGCTGGAA
AGACTACTCGACGTGGAGGCTTTTATAGTAGAAAAGTTCGATGAATATCT
TGAAAGGGCTCAGCAAGAACAGGAGAACTTAAAAAGATTTTTAGATCAGA
TAGACGAGCAGCAAAATGATCGTGGCGATCTCGAGGAATACTTTGGAAAT
CCAATCAATGCCTTCATCACCATTAAACGCCTCGTTCATGACTGGAAGTT
CAATGTATTTGATCCTGTGTTTGACTCCAGTAATTTTGAGACCTACAAGA
ACAACTTAAGTGATTCGCTCGAGAAGATCAACTTCAAAGGACCCACCCAA
GAGGATCTACATGGAGCCACCCGCGCTCTTCTTCGGCTGCAGAATATGTA
CCAACTAAACACGGACCACCTAGCTTCTGGCGTTCTCCATCCTGGCGAGA
AAAACGCACTGGGCACCTCGTTGAGTGCAAGTGACTGTTTTGAGTTAGGC
AAGAATCTCTGCGAGATTAAGGAGTACTCTTACGGTTCCGAGTGGCTATT
GGAGGCCAGAAAACGATTGCACGGGAAACCATTAGGTTTTATATCACCCA
ATGTGAGCGATGTCGAGATACTGGAGCACCTTTCATCCGCCTTCAATGGT
TTGGTGAATCTAAAATTAGCTTATAAATTATATAATGAAATATTGG
BO16694.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:28:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31014-PA | 1623 | PH4alphaSG1-RA | 1..730 | 17..746 | 3575 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 09:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG1-RA | 1708 | CG31014-RA | 24..761 | 9..746 | 3615 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 09:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30504840..30505402 | 746..184 | 2770 | 99.5 | Minus |
3R | 32079331 | 3R | 30505461..30505638 | 186..9 | 860 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 09:50:17 has no hits.
BO16694.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:22 Download gff for
BO16694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31014-PA | 1..730 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:28:39 Download gff for
BO16694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 24..761 | 9..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:39:04 Download gff for
BO16694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 24..761 | 9..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:39:04 Download gff for
BO16694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30505461..30505638 | 9..186 | 98 | | Minus |
3R | 30504840..30505399 | 187..746 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:28:39 Download gff for
BO16694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26330562..26331121 | 187..746 | 99 | <- | Minus |
arm_3R | 26331183..26331360 | 9..186 | 98 | | Minus |
BO16694.complete Sequence
1654 bp assembled on 2007-03-23
GenBank Submission: FJ633891
> BO16694.complete
GAAGTTATCAGTCGACATGTTCCGGCTAAGTATTATTTTATCGTTGCTCT
GCGTATTCCCAGTCAATGGAGATTACTACTCGGCTATAAGTGAGCTGGAA
AGACTACTCGACGTGGAGGCTTTTATAGTAGAAAAGTTCGATGAATATCT
TGAAAGGGCTCAGCAAGAACAGGAGAACTTAAAAAGATTTTTAGATCAGA
TAGACGAGCAGCAAAATGATCGTGGCGATCTCGAGGAATACTTTGGAAAT
CCAATCAATGCCTTCATCACCATTAAACGCCTCGTTCATGACTGGAAGTT
CAATGTATTTGATCCTGTGTTTGACTCCAGTAATTTTGAGACCTACAAGA
ACAACTTAAGTGATTCGCTCGAGAAGATCAACTTCAAAGGACCCACCCAA
GAGGATCTACATGGAGCCACCCGCGCTCTTCTTCGGCTGCAGAATATGTA
CCAACTAAACACGGACCACCTAGCTTCTGGCGTTCTCCATCCTGGCGAGA
AAAACGCACTGGGCACCTCGTTGAGTGCAAGTGACTGTTTTGAGTTAGGC
AAGAATCTCTGCGAGATTAAGGAGTACTCTTACGGTTCCGAGTGGCTATT
GGAGGCCAGAAAACGATTGCACGGGAAACCATTAGGTTTTATATCACCCA
ATGTGAGCGATGTCGAGATACTGGAGCACCTTTCATCCGCCTTCAATGGT
TTGGGAAATCTAAAATTAGCTTATAAATTAAATAATGAAATATTGGATAA
GAAGCCTGATCATGAGGAGGCTCTCAAGAACAAGATATTGTACGAAGGCC
AATTGGCTAGGGAGCGAAGTTTTGCTCCCAGAAAGCAAGTGGAACTGCCT
CAGATAGCAGAAAAAGAACAAAAGGAGAGCTACAAGCTATATACGCAAGT
TTGTCGAGGAGAACTCCATCAATCTCCGCGGGAGCAGCGGAATTTGAGGT
GCTGGCTCTACCACCAGGGAGTTCCCTACTATCGTCTTTCCCCTTTCAAA
ATCGAGCAATTGAATGTCGACCCTTATGTCGCCTACGTTCACGAAGTTCT
GTGGGACAGCGAGATAGATACGATCATGGAGCACGGCAAGGGTAATATGG
AGCGTTCAAAGGTGGGTCAAAGTGAGAACTCTACCACAAGTGAGGTCCGG
ATAAGTCGCAACACCTGGCTATGGTACGATGCGAATCCATGGCTTTCCAA
GATTAAACAGCGATTGGAGGATGTCACCGGACTGAGCACGGAAAGTGCGG
AGCCCCTGCAGCTGGTCAACTACGGAATTGGGGGACAGTATGAGCCGCAC
TTTGACTTCGTGGAGGACGATGGTCAAAGTGTTTTCAGCTGGAAGGGCAA
CCGCCTGTTGACAGCTCTTTTCTACCTAAATGATGTTGCTCTGGGAGGAG
CCACAGCCTTTCCCTTCCTCCGATTGGCTGTTCCGCCGGTGAAGGGAAGT
CTTTTAATCTGGTACAATCTGCACAGTTCCACCCACAAGGACTTTCGCAC
GAAGCATGCTGGTTGCCCCGTTCTTCAAGGATCAAAGTGGATTTGCAATG
AGTGGTTCCATGTGGGTGCCCAGGAATTCAGGCGACCTTGTGGCTTGAGC
AGTGATGAGGGAAAGTTTTTGCACTTGAAGGACATAGCAAGCTTTCTAGA
CCAT
BO16694.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG1-RA | 1623 | CG31014-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG1-RA | 1708 | CG31014-RA | 24..1651 | 9..1636 | 8110 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30504720..30505402 | 866..184 | 3415 | 100 | Minus |
3R | 32079331 | 3R | 30504213..30504663 | 1316..866 | 2255 | 100 | Minus |
3R | 32079331 | 3R | 30505461..30505638 | 186..9 | 860 | 98.9 | Minus |
3R | 32079331 | 3R | 30503871..30504036 | 1541..1376 | 830 | 100 | Minus |
3R | 32079331 | 3R | 30503722..30503816 | 1636..1542 | 475 | 100 | Minus |
3R | 32079331 | 3R | 30504091..30504156 | 1379..1314 | 315 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:43:38 has no hits.
BO16694.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:51 Download gff for
BO16694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 1..1623 | 17..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:47 Download gff for
BO16694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 12..1642 | 9..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:47 Download gff for
BO16694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 37..1651 | 22..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:51 Download gff for
BO16694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 12..1642 | 9..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:01 Download gff for
BO16694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PH4alphaSG1-RA | 37..1651 | 22..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:01 Download gff for
BO16694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30503720..30503816 | 1542..1638 | 97 | <- | Minus |
3R | 30503871..30504036 | 1376..1541 | 100 | <- | Minus |
3R | 30504095..30504154 | 1316..1375 | 100 | <- | Minus |
3R | 30504214..30504663 | 866..1315 | 100 | <- | Minus |
3R | 30504721..30505399 | 187..865 | 100 | <- | Minus |
3R | 30505461..30505625 | 22..186 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:47 Download gff for
BO16694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26331183..26331347 | 22..186 | 100 | | Minus |
arm_3R | 26329442..26329538 | 1542..1638 | 97 | <- | Minus |
arm_3R | 26329593..26329758 | 1376..1541 | 100 | <- | Minus |
arm_3R | 26329817..26329876 | 1316..1375 | 100 | <- | Minus |
arm_3R | 26329936..26330385 | 866..1315 | 100 | <- | Minus |
arm_3R | 26330443..26331121 | 187..865 | 100 | <- | Minus |
BO16694.pep Sequence
Translation from 16 to 1654
> BO16694.pep
MFRLSIILSLLCVFPVNGDYYSAISELERLLDVEAFIVEKFDEYLERAQQ
EQENLKRFLDQIDEQQNDRGDLEEYFGNPINAFITIKRLVHDWKFNVFDP
VFDSSNFETYKNNLSDSLEKINFKGPTQEDLHGATRALLRLQNMYQLNTD
HLASGVLHPGEKNALGTSLSASDCFELGKNLCEIKEYSYGSEWLLEARKR
LHGKPLGFISPNVSDVEILEHLSSAFNGLGNLKLAYKLNNEILDKKPDHE
EALKNKILYEGQLARERSFAPRKQVELPQIAEKEQKESYKLYTQVCRGEL
HQSPREQRNLRCWLYHQGVPYYRLSPFKIEQLNVDPYVAYVHEVLWDSEI
DTIMEHGKGNMERSKVGQSENSTTSEVRISRNTWLWYDANPWLSKIKQRL
EDVTGLSTESAEPLQLVNYGIGGQYEPHFDFVEDDGQSVFSWKGNRLLTA
LFYLNDVALGGATAFPFLRLAVPPVKGSLLIWYNLHSSTHKDFRTKHAGC
PVLQGSKWICNEWFHVGAQEFRRPCGLSSDEGKFLHLKDIASFLDH
BO16694.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PH4alphaSG1-PA | 540 | CG31014-PA | 1..540 | 1..540 | 2874 | 100 | Plus |
PH4alphaEFB-PA | 550 | CG31022-PA | 5..548 | 2..534 | 924 | 36.8 | Plus |
PH4alphaMP-PA | 535 | CG9726-PA | 7..533 | 6..539 | 821 | 35.6 | Plus |
PH4alphaNE1-PA | 537 | CG9728-PA | 10..526 | 7..530 | 802 | 35.4 | Plus |
PH4alphaSG2-PA | 527 | CG1546-PA | 9..527 | 4..539 | 795 | 35.4 | Plus |