Clone BO16694 Report

Search the DGRC for BO16694

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:166
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptPH4alphaSG1-RA
Protein status:BO16694.pep: validated full length
Sequenced Size:1654

Clone Sequence Records

BO16694.3prime Sequence

750 bp (666 high quality bases) assembled on 2006-10-13

> BO16694.3prime
ATGGTCTAGAAAGCTTGCTATGTCCTTCAAGTGCAAAAACTTTCCCTCAT
CACTGCTCAAGCCACAAGGTCGCCTGAATTCCTGGGCACCCACATGGAAC
CACTCATTGCAAATCCACTTTGATCCTTGAAGAACGGGGCAACCAGCATG
CTTCGTGCGAAAGTCCTTGTGGGTGGAACTGTGCAGATTGTACCAGATTA
AAAGACTTCCCTTCACCGGCGGAACAGCCAATCGGAGGAAGGGAAAGGCT
GTGGCTCCTCCCAGAGCAACATCATTTAGGTAGAAAAGAGCTGTCAACAG
GCGGTTGCCCTTCCAGCTGAAAACACTTTGACCATCGTCCTCCACGAAGT
CAAAGTGCGGCTCATACTGTCCCCCAATTCCGTAGTTGACCAGCTGCAGG
GGCTCCGCACTTTCCGTGCTCAGTCCGGTGACATCCTCCAATCGCTGTTT
AATCTTGGAAAGCCATGGATTCGCATCGTACCATAGCCAGGTGTTGCGAC
TTATCCGGACCTCACTTGTGGTAGAGTTCTCACTTTGACCCACCTTTGAA
CGCTCCATATTACCCTTGCCGTGCTCCATGATCGTATCTATCTCGCTGTC
CCACAGAACTTCGTGAACGTAGGCGACATAAGGGTCGACATTCAATTGCT
CGATTTTGAAAGGGGAAAGACGATAGTAGGGAACTCCCTGGTGGTAGAGC
CAGCACCTCAAATTCCGCTGCTCCCGCGGAGATTGATGGAGTTCTCATCG

BO16694.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31014-PA 1623 PH4alphaSG1-RA 893..1620 746..19 3640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG1-RA 1708 CG31014-RA 920..1651 750..19 3645 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30504213..30504624 339..750 2045 99.8 Plus
3R 32079331 3R 30503871..30504036 114..279 830 100 Plus
3R 32079331 3R 30503722..30503816 19..113 475 100 Plus
3R 32079331 3R 30504091..30504156 276..341 315 98.5 Plus
Blast to na_te.dros performed on 2015-02-06 13:01:41 has no hits.

BO16694.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:21 Download gff for BO16694.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31014-PA 889..1623 15..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:16:12 Download gff for BO16694.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 920..1654 15..750 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:44:34 Download gff for BO16694.3prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 920..1654 15..750 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:44:34 Download gff for BO16694.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30503718..30503816 15..113 97 <- Plus
3R 30503871..30504036 114..279 100 <- Plus
3R 30504095..30504154 280..339 100 <- Plus
3R 30504214..30504624 340..750 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:16:12 Download gff for BO16694.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26329936..26330346 340..750 99   Plus
arm_3R 26329440..26329538 15..113 97 <- Plus
arm_3R 26329593..26329758 114..279 100 <- Plus
arm_3R 26329817..26329876 280..339 100 <- Plus

BO16694.5prime Sequence

746 bp (700 high quality bases) assembled on 2006-10-13

> BO16694.5prime
GAAGTTATCAGTCGACATGTTCCGGCTAAGTATTATTTTATCGTTGCTCT
GCGTATTCCCAGTCAATGGAGATTACTACTCGGCTATAAGTGAGCTGGAA
AGACTACTCGACGTGGAGGCTTTTATAGTAGAAAAGTTCGATGAATATCT
TGAAAGGGCTCAGCAAGAACAGGAGAACTTAAAAAGATTTTTAGATCAGA
TAGACGAGCAGCAAAATGATCGTGGCGATCTCGAGGAATACTTTGGAAAT
CCAATCAATGCCTTCATCACCATTAAACGCCTCGTTCATGACTGGAAGTT
CAATGTATTTGATCCTGTGTTTGACTCCAGTAATTTTGAGACCTACAAGA
ACAACTTAAGTGATTCGCTCGAGAAGATCAACTTCAAAGGACCCACCCAA
GAGGATCTACATGGAGCCACCCGCGCTCTTCTTCGGCTGCAGAATATGTA
CCAACTAAACACGGACCACCTAGCTTCTGGCGTTCTCCATCCTGGCGAGA
AAAACGCACTGGGCACCTCGTTGAGTGCAAGTGACTGTTTTGAGTTAGGC
AAGAATCTCTGCGAGATTAAGGAGTACTCTTACGGTTCCGAGTGGCTATT
GGAGGCCAGAAAACGATTGCACGGGAAACCATTAGGTTTTATATCACCCA
ATGTGAGCGATGTCGAGATACTGGAGCACCTTTCATCCGCCTTCAATGGT
TTGGTGAATCTAAAATTAGCTTATAAATTATATAATGAAATATTGG

BO16694.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:28:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31014-PA 1623 PH4alphaSG1-RA 1..730 17..746 3575 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 09:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG1-RA 1708 CG31014-RA 24..761 9..746 3615 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 09:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30504840..30505402 746..184 2770 99.5 Minus
3R 32079331 3R 30505461..30505638 186..9 860 98.9 Minus
Blast to na_te.dros performed on 2015-01-31 09:50:17 has no hits.

BO16694.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:22 Download gff for BO16694.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31014-PA 1..730 17..746 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:28:39 Download gff for BO16694.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 24..761 9..746 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:39:04 Download gff for BO16694.5prime
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 24..761 9..746 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:39:04 Download gff for BO16694.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30505461..30505638 9..186 98   Minus
3R 30504840..30505399 187..746 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:28:39 Download gff for BO16694.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26330562..26331121 187..746 99 <- Minus
arm_3R 26331183..26331360 9..186 98   Minus

BO16694.complete Sequence

1654 bp assembled on 2007-03-23

GenBank Submission: FJ633891

> BO16694.complete
GAAGTTATCAGTCGACATGTTCCGGCTAAGTATTATTTTATCGTTGCTCT
GCGTATTCCCAGTCAATGGAGATTACTACTCGGCTATAAGTGAGCTGGAA
AGACTACTCGACGTGGAGGCTTTTATAGTAGAAAAGTTCGATGAATATCT
TGAAAGGGCTCAGCAAGAACAGGAGAACTTAAAAAGATTTTTAGATCAGA
TAGACGAGCAGCAAAATGATCGTGGCGATCTCGAGGAATACTTTGGAAAT
CCAATCAATGCCTTCATCACCATTAAACGCCTCGTTCATGACTGGAAGTT
CAATGTATTTGATCCTGTGTTTGACTCCAGTAATTTTGAGACCTACAAGA
ACAACTTAAGTGATTCGCTCGAGAAGATCAACTTCAAAGGACCCACCCAA
GAGGATCTACATGGAGCCACCCGCGCTCTTCTTCGGCTGCAGAATATGTA
CCAACTAAACACGGACCACCTAGCTTCTGGCGTTCTCCATCCTGGCGAGA
AAAACGCACTGGGCACCTCGTTGAGTGCAAGTGACTGTTTTGAGTTAGGC
AAGAATCTCTGCGAGATTAAGGAGTACTCTTACGGTTCCGAGTGGCTATT
GGAGGCCAGAAAACGATTGCACGGGAAACCATTAGGTTTTATATCACCCA
ATGTGAGCGATGTCGAGATACTGGAGCACCTTTCATCCGCCTTCAATGGT
TTGGGAAATCTAAAATTAGCTTATAAATTAAATAATGAAATATTGGATAA
GAAGCCTGATCATGAGGAGGCTCTCAAGAACAAGATATTGTACGAAGGCC
AATTGGCTAGGGAGCGAAGTTTTGCTCCCAGAAAGCAAGTGGAACTGCCT
CAGATAGCAGAAAAAGAACAAAAGGAGAGCTACAAGCTATATACGCAAGT
TTGTCGAGGAGAACTCCATCAATCTCCGCGGGAGCAGCGGAATTTGAGGT
GCTGGCTCTACCACCAGGGAGTTCCCTACTATCGTCTTTCCCCTTTCAAA
ATCGAGCAATTGAATGTCGACCCTTATGTCGCCTACGTTCACGAAGTTCT
GTGGGACAGCGAGATAGATACGATCATGGAGCACGGCAAGGGTAATATGG
AGCGTTCAAAGGTGGGTCAAAGTGAGAACTCTACCACAAGTGAGGTCCGG
ATAAGTCGCAACACCTGGCTATGGTACGATGCGAATCCATGGCTTTCCAA
GATTAAACAGCGATTGGAGGATGTCACCGGACTGAGCACGGAAAGTGCGG
AGCCCCTGCAGCTGGTCAACTACGGAATTGGGGGACAGTATGAGCCGCAC
TTTGACTTCGTGGAGGACGATGGTCAAAGTGTTTTCAGCTGGAAGGGCAA
CCGCCTGTTGACAGCTCTTTTCTACCTAAATGATGTTGCTCTGGGAGGAG
CCACAGCCTTTCCCTTCCTCCGATTGGCTGTTCCGCCGGTGAAGGGAAGT
CTTTTAATCTGGTACAATCTGCACAGTTCCACCCACAAGGACTTTCGCAC
GAAGCATGCTGGTTGCCCCGTTCTTCAAGGATCAAAGTGGATTTGCAATG
AGTGGTTCCATGTGGGTGCCCAGGAATTCAGGCGACCTTGTGGCTTGAGC
AGTGATGAGGGAAAGTTTTTGCACTTGAAGGACATAGCAAGCTTTCTAGA
CCAT

BO16694.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG1-RA 1623 CG31014-PA 1..1620 17..1636 8100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:43:41
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG1-RA 1708 CG31014-RA 24..1651 9..1636 8110 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30504720..30505402 866..184 3415 100 Minus
3R 32079331 3R 30504213..30504663 1316..866 2255 100 Minus
3R 32079331 3R 30505461..30505638 186..9 860 98.9 Minus
3R 32079331 3R 30503871..30504036 1541..1376 830 100 Minus
3R 32079331 3R 30503722..30503816 1636..1542 475 100 Minus
3R 32079331 3R 30504091..30504156 1379..1314 315 98.5 Minus
Blast to na_te.dros performed on 2014-11-27 20:43:38 has no hits.

BO16694.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:10:51 Download gff for BO16694.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 1..1623 17..1640 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:28:47 Download gff for BO16694.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 12..1642 9..1640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:47 Download gff for BO16694.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 37..1651 22..1638 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:10:51 Download gff for BO16694.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 12..1642 9..1640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:01 Download gff for BO16694.complete
Subject Subject Range Query Range Percent Splice Strand
PH4alphaSG1-RA 37..1651 22..1638 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:01 Download gff for BO16694.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30503720..30503816 1542..1638 97 <- Minus
3R 30503871..30504036 1376..1541 100 <- Minus
3R 30504095..30504154 1316..1375 100 <- Minus
3R 30504214..30504663 866..1315 100 <- Minus
3R 30504721..30505399 187..865 100 <- Minus
3R 30505461..30505625 22..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:47 Download gff for BO16694.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26331183..26331347 22..186 100   Minus
arm_3R 26329442..26329538 1542..1638 97 <- Minus
arm_3R 26329593..26329758 1376..1541 100 <- Minus
arm_3R 26329817..26329876 1316..1375 100 <- Minus
arm_3R 26329936..26330385 866..1315 100 <- Minus
arm_3R 26330443..26331121 187..865 100 <- Minus

BO16694.pep Sequence

Translation from 16 to 1654

> BO16694.pep
MFRLSIILSLLCVFPVNGDYYSAISELERLLDVEAFIVEKFDEYLERAQQ
EQENLKRFLDQIDEQQNDRGDLEEYFGNPINAFITIKRLVHDWKFNVFDP
VFDSSNFETYKNNLSDSLEKINFKGPTQEDLHGATRALLRLQNMYQLNTD
HLASGVLHPGEKNALGTSLSASDCFELGKNLCEIKEYSYGSEWLLEARKR
LHGKPLGFISPNVSDVEILEHLSSAFNGLGNLKLAYKLNNEILDKKPDHE
EALKNKILYEGQLARERSFAPRKQVELPQIAEKEQKESYKLYTQVCRGEL
HQSPREQRNLRCWLYHQGVPYYRLSPFKIEQLNVDPYVAYVHEVLWDSEI
DTIMEHGKGNMERSKVGQSENSTTSEVRISRNTWLWYDANPWLSKIKQRL
EDVTGLSTESAEPLQLVNYGIGGQYEPHFDFVEDDGQSVFSWKGNRLLTA
LFYLNDVALGGATAFPFLRLAVPPVKGSLLIWYNLHSSTHKDFRTKHAGC
PVLQGSKWICNEWFHVGAQEFRRPCGLSSDEGKFLHLKDIASFLDH

BO16694.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
PH4alphaSG1-PA 540 CG31014-PA 1..540 1..540 2874 100 Plus
PH4alphaEFB-PA 550 CG31022-PA 5..548 2..534 924 36.8 Plus
PH4alphaMP-PA 535 CG9726-PA 7..533 6..539 821 35.6 Plus
PH4alphaNE1-PA 537 CG9728-PA 10..526 7..530 802 35.4 Plus
PH4alphaSG2-PA 527 CG1546-PA 9..527 4..539 795 35.4 Plus