Clone BO16739 Report

Search the DGRC for BO16739

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptrobl22E-RA
Protein status:BO16739.pep: validated full length
Sequenced Size:325

Clone Sequence Records

BO16739.5prime Sequence

323 bp (323 high quality bases) assembled on 2006-10-13

> BO16739.5prime
GAAGTTATCAGTCGACATGTCCGCCGAAGTGGAGGAACTATTGAAGCGCT
TTCAGTCCATGAAGAACGTCACCGGCATAGTTGTGGTGGACAACGACGGC
ATTCCGATCAAAACGACCCTGGACTACACTCTGACACTCCACTACGCGGC
ACTGATGCAAACGGTGCGGGAGAAGGCTCGCCAGGTGGTCCTGGATCTGG
ACGCCACCAACGAATTCACCTTCCTGCGGCTGCGGACTGAGCAGAATGAG
GTGATGCTGTGCCCGCAGGAAGATTACTTCATCATGGTGATCCAGAGCCC
GTGCGACGCAAGCTTTCTAGACC

BO16739.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10838-PA 294 robl22E-RA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-RB 454 CG10838-RB 56..346 17..307 1455 100 Plus
robl22E-RA 475 CG10838-RA 77..367 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2290332..2290622 307..17 1455 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:07:41 has no hits.

BO16739.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:24 Download gff for BO16739.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10838-PA 1..294 17..308 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:30 Download gff for BO16739.5prime
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 74..373 10..313 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:03 Download gff for BO16739.5prime
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 74..373 10..313 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:03 Download gff for BO16739.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2290326..2290625 10..313 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:30 Download gff for BO16739.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2290326..2290625 10..313 97   Minus

BO16739.complete Sequence

325 bp assembled on 2006-10-11

GenBank Submission: FJ633893

> BO16739.complete
GAAGTTATCAGTCGACATGTCCGCCGAAGTGGAGGAACTATTGAAGCGCT
TTCAGTCCATGAAGAACGTCACCGGCATAGTTGTGGTGGACAACGACGGC
ATTCCGATCAAAACGACCCTGGACTACACTCTGACACTCCACTACGCGGC
ACTGATGCAAACGGTGCGGGAGAAGGCTCGCCAGGTGGTCCTGGATCTGG
ACGCCACCAACGAATTCACCTTCCTGCGGCTGCGGACTGAGCAGAATGAG
GTGATGCTGTGCCCGCAGGAAGATTACTTCATCATGGTGATCCAGAGCCC
GTGCGACGCAAGCTTTCTAGACCAT

BO16739.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-RB 294 CG10838-PB 1..291 17..307 1455 100 Plus
robl22E-RA 294 CG10838-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-RB 454 CG10838-RB 56..346 17..307 1455 100 Plus
robl22E-RA 475 CG10838-RA 77..367 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2290332..2290622 307..17 1455 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:04:30 has no hits.

BO16739.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:22 Download gff for BO16739.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 1..294 17..308 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:15 Download gff for BO16739.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 1..294 17..308 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:14 Download gff for BO16739.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 77..367 17..309 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:22 Download gff for BO16739.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 1..294 17..308 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:18 Download gff for BO16739.complete
Subject Subject Range Query Range Percent Splice Strand
robl22E-RA 77..367 17..309 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:18 Download gff for BO16739.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2290330..2290622 17..309 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:14 Download gff for BO16739.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2290330..2290622 17..309 99   Minus

BO16739.pep Sequence

Translation from 16 to 325

> BO16739.pep
MSAEVEELLKRFQSMKNVTGIVVVDNDGIPIKTTLDYTLTLHYAALMQTV
REKARQVVLDLDATNEFTFLRLRTEQNEVMLCPQEDYFIMVIQSPCDASF
LDH

BO16739.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
robl22E-PB 97 CG10838-PB 1..97 1..97 491 100 Plus
robl22E-PA 97 CG10838-PA 1..97 1..97 491 100 Plus
robl-PA 97 CG10751-PA 1..97 1..97 285 54.6 Plus
CG10834-PA 97 CG10834-PA 1..95 1..95 282 53.7 Plus
CG10822-PA 114 CG10822-PA 15..107 5..97 158 31.2 Plus