Clone Sequence Records
BO16742.3prime Sequence
434 bp (434 high quality bases) assembled on 2006-10-13
> BO16742.3prime
ATGGTCTAGAAAGCTTGCGTGATGTCCTGGAATGGCCTTGTGCTCCTTCA
GGCACATGGTAACCTTAAAGGCCGTGTCGCAATCGTTGGTTCCCTTGATG
TCCTTGCAGGCATTCACTCCCGAGGAAATCTCGTCCATTTTGTCCTTGAT
CTGAGGCACATTTTTGAGAGTGTCGAGCATAGCCTGAGCATTGAACTGGC
CATTGGTGAGATGACCCTGCTTCTCCATCAGGCACTTGGTGTAGCACTTG
AGGTTCTCCTTGGCACTGCTCTGCATCCCGCTGGCCATGAACTCCTTGAG
ATCAGCCTCGGTCACTTGGTTGGTCTCCATGCACTGTTGCATTATTTGGC
GAAAGTCCGGATTACACTGTCCCATGGACAAAAAAGCTGCCAGAGCAATA
CAGAATAGGGTGAACTTCATGTCGACTGATAACT
BO16742.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13874-PA | 405 | Obp56h-RA | 1..402 | 420..19 | 2010 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-RB | 495 | CG13874-RB | 24..425 | 420..19 | 2010 | 100 | Minus |
Obp56h-RA | 593 | CG13874-RA | 24..425 | 420..19 | 2010 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19815687..19816036 | 368..19 | 1750 | 100 | Minus |
2R | 25286936 | 2R | 19815577..19815630 | 420..367 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:24:41 has no hits.
BO16742.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:28 Download gff for
BO16742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13874-PA | 1..405 | 15..420 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:56:20 Download gff for
BO16742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 19..428 | 15..425 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:24 Download gff for
BO16742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 19..428 | 15..425 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:24 Download gff for
BO16742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19815572..19815630 | 367..425 | 96 | -> | Minus |
2R | 19815689..19816039 | 15..366 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:56:20 Download gff for
BO16742.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15703077..15703135 | 367..425 | 96 | -> | Minus |
arm_2R | 15703194..15703544 | 15..366 | 99 | | Minus |
BO16742.5prime Sequence
434 bp (434 high quality bases) assembled on 2006-10-13
> BO16742.5prime
GAAGTTATCAGTCGACATGAAGTTCACCCTATTCTGTATTGCTCTGGCAG
CTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCAAATAATGCAA
CAGTGCATGGAGACCAACCAAGTGACCGAGGCTGATCTCAAGGAGTTCAT
GGCCAGCGGGATGCAGAGCAGTGCCAAGGAGAACCTCAAGTGCTACACCA
AGTGCCTGATGGAGAAGCAGGGTCATCTCACCAATGGCCAGTTCAATGCT
CAGGCTATGCTCGACACTCTCAAAAATGTGCCTCAGATCAAGGACAAAAT
GGACGAGATTTCCTCGGGAGTGAATGCCTGCAAGGACATCAAGGGAACCA
ACGATTGCGACACGGCCTTTAAGGTTACCATGTGCCTGAAGGAGCACAAG
GCCATTCCAGGACATCACGCAAGCTTTCTAGACC
BO16742.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13874-PA | 405 | Obp56h-RA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-RB | 495 | CG13874-RB | 24..425 | 17..418 | 2010 | 100 | Plus |
Obp56h-RA | 593 | CG13874-RA | 24..425 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19815687..19816036 | 69..418 | 1750 | 100 | Plus |
2R | 25286936 | 2R | 19815577..19815630 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:44:40 has no hits.
BO16742.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:29 Download gff for
BO16742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13874-PA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:46 Download gff for
BO16742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 19..428 | 12..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:42 Download gff for
BO16742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 19..428 | 12..422 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:42 Download gff for
BO16742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19815572..19815630 | 12..70 | 96 | -> | Plus |
2R | 19815689..19816039 | 71..422 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:46 Download gff for
BO16742.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15703077..15703135 | 12..70 | 96 | -> | Plus |
arm_2R | 15703194..15703544 | 71..422 | 99 | | Plus |
BO16742.complete Sequence
436 bp assembled on 2006-10-11
GenBank Submission: FJ633894
> BO16742.complete
GAAGTTATCAGTCGACATGAAGTTCACCCTATTCTGTATTGCTCTGGCAG
CTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCAAATAATGCAA
CAGTGCATGGAGACCAACCAAGTGACCGAGGCTGATCTCAAGGAGTTCAT
GGCCAGCGGGATGCAGAGCAGTGCCAAGGAGAACCTCAAGTGCTACACCA
AGTGCCTGATGGAGAAGCAGGGTCATCTCACCAATGGCCAGTTCAATGCT
CAGGCTATGCTCGACACTCTCAAAAATGTGCCTCAGATCAAGGACAAAAT
GGACGAGATTTCCTCGGGAGTGAATGCCTGCAAGGACATCAAGGGAACCA
ACGATTGCGACACGGCCTTTAAGGTTACCATGTGCCTGAAGGAGCACAAG
GCCATTCCAGGACATCACGCAAGCTTTCTAGACCAT
BO16742.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-RB | 405 | CG13874-PB | 1..402 | 17..418 | 2010 | 100 | Plus |
Obp56h-RA | 405 | CG13874-PA | 1..402 | 17..418 | 2010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-RB | 495 | CG13874-RB | 24..425 | 17..418 | 2010 | 100 | Plus |
Obp56h-RA | 593 | CG13874-RA | 24..425 | 17..418 | 2010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19815687..19816036 | 69..418 | 1750 | 100 | Plus |
2R | 25286936 | 2R | 19815577..19815630 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:03:32 has no hits.
BO16742.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:33 Download gff for
BO16742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:06 Download gff for
BO16742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:26 Download gff for
BO16742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 24..425 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:33 Download gff for
BO16742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 1..405 | 17..422 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:18 Download gff for
BO16742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56h-RA | 24..425 | 17..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:18 Download gff for
BO16742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19815577..19815630 | 17..70 | 100 | -> | Plus |
2R | 19815689..19816036 | 71..420 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:26 Download gff for
BO16742.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15703082..15703135 | 17..70 | 100 | -> | Plus |
arm_2R | 15703194..15703541 | 71..420 | 99 | | Plus |
BO16742.pep Sequence
Translation from 16 to 436
> BO16742.pep
MKFTLFCIALAAFLSMGQCNPDFRQIMQQCMETNQVTEADLKEFMASGMQ
SSAKENLKCYTKCLMEKQGHLTNGQFNAQAMLDTLKNVPQIKDKMDEISS
GVNACKDIKGTNDCDTAFKVTMCLKEHKAIPGHHASFLDH
BO16742.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56h-PB | 134 | CG13874-PB | 1..134 | 1..134 | 715 | 100 | Plus |
Obp56h-PA | 134 | CG13874-PA | 1..134 | 1..134 | 715 | 100 | Plus |
Obp56g-PA | 131 | CG13873-PA | 1..128 | 1..125 | 153 | 28.2 | Plus |
Obp56g-PB | 132 | CG13873-PB | 30..129 | 24..125 | 152 | 28.2 | Plus |
Obp56a-PA | 139 | CG11797-PA | 16..135 | 8..131 | 141 | 28 | Plus |