Clone BO16742 Report

Search the DGRC for BO16742

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptObp56h-RA
Protein status:BO16742.pep: validated full length
Sequenced Size:436

Clone Sequence Records

BO16742.3prime Sequence

434 bp (434 high quality bases) assembled on 2006-10-13

> BO16742.3prime
ATGGTCTAGAAAGCTTGCGTGATGTCCTGGAATGGCCTTGTGCTCCTTCA
GGCACATGGTAACCTTAAAGGCCGTGTCGCAATCGTTGGTTCCCTTGATG
TCCTTGCAGGCATTCACTCCCGAGGAAATCTCGTCCATTTTGTCCTTGAT
CTGAGGCACATTTTTGAGAGTGTCGAGCATAGCCTGAGCATTGAACTGGC
CATTGGTGAGATGACCCTGCTTCTCCATCAGGCACTTGGTGTAGCACTTG
AGGTTCTCCTTGGCACTGCTCTGCATCCCGCTGGCCATGAACTCCTTGAG
ATCAGCCTCGGTCACTTGGTTGGTCTCCATGCACTGTTGCATTATTTGGC
GAAAGTCCGGATTACACTGTCCCATGGACAAAAAAGCTGCCAGAGCAATA
CAGAATAGGGTGAACTTCATGTCGACTGATAACT

BO16742.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG13874-PA 405 Obp56h-RA 1..402 420..19 2010 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-RB 495 CG13874-RB 24..425 420..19 2010 100 Minus
Obp56h-RA 593 CG13874-RA 24..425 420..19 2010 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19815687..19816036 368..19 1750 100 Minus
2R 25286936 2R 19815577..19815630 420..367 270 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:24:41 has no hits.

BO16742.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:28 Download gff for BO16742.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13874-PA 1..405 15..420 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:56:20 Download gff for BO16742.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 19..428 15..425 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:24 Download gff for BO16742.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 19..428 15..425 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:24 Download gff for BO16742.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19815572..19815630 367..425 96 -> Minus
2R 19815689..19816039 15..366 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:56:20 Download gff for BO16742.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15703077..15703135 367..425 96 -> Minus
arm_2R 15703194..15703544 15..366 99   Minus

BO16742.5prime Sequence

434 bp (434 high quality bases) assembled on 2006-10-13

> BO16742.5prime
GAAGTTATCAGTCGACATGAAGTTCACCCTATTCTGTATTGCTCTGGCAG
CTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCAAATAATGCAA
CAGTGCATGGAGACCAACCAAGTGACCGAGGCTGATCTCAAGGAGTTCAT
GGCCAGCGGGATGCAGAGCAGTGCCAAGGAGAACCTCAAGTGCTACACCA
AGTGCCTGATGGAGAAGCAGGGTCATCTCACCAATGGCCAGTTCAATGCT
CAGGCTATGCTCGACACTCTCAAAAATGTGCCTCAGATCAAGGACAAAAT
GGACGAGATTTCCTCGGGAGTGAATGCCTGCAAGGACATCAAGGGAACCA
ACGATTGCGACACGGCCTTTAAGGTTACCATGTGCCTGAAGGAGCACAAG
GCCATTCCAGGACATCACGCAAGCTTTCTAGACC

BO16742.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13874-PA 405 Obp56h-RA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-RB 495 CG13874-RB 24..425 17..418 2010 100 Plus
Obp56h-RA 593 CG13874-RA 24..425 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19815687..19816036 69..418 1750 100 Plus
2R 25286936 2R 19815577..19815630 17..70 270 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:44:40 has no hits.

BO16742.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:29 Download gff for BO16742.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13874-PA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:46 Download gff for BO16742.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 19..428 12..422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:42 Download gff for BO16742.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 19..428 12..422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:42 Download gff for BO16742.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19815572..19815630 12..70 96 -> Plus
2R 19815689..19816039 71..422 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:46 Download gff for BO16742.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15703077..15703135 12..70 96 -> Plus
arm_2R 15703194..15703544 71..422 99   Plus

BO16742.complete Sequence

436 bp assembled on 2006-10-11

GenBank Submission: FJ633894

> BO16742.complete
GAAGTTATCAGTCGACATGAAGTTCACCCTATTCTGTATTGCTCTGGCAG
CTTTTTTGTCCATGGGACAGTGTAATCCGGACTTTCGCCAAATAATGCAA
CAGTGCATGGAGACCAACCAAGTGACCGAGGCTGATCTCAAGGAGTTCAT
GGCCAGCGGGATGCAGAGCAGTGCCAAGGAGAACCTCAAGTGCTACACCA
AGTGCCTGATGGAGAAGCAGGGTCATCTCACCAATGGCCAGTTCAATGCT
CAGGCTATGCTCGACACTCTCAAAAATGTGCCTCAGATCAAGGACAAAAT
GGACGAGATTTCCTCGGGAGTGAATGCCTGCAAGGACATCAAGGGAACCA
ACGATTGCGACACGGCCTTTAAGGTTACCATGTGCCTGAAGGAGCACAAG
GCCATTCCAGGACATCACGCAAGCTTTCTAGACCAT

BO16742.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-RB 405 CG13874-PB 1..402 17..418 2010 100 Plus
Obp56h-RA 405 CG13874-PA 1..402 17..418 2010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-RB 495 CG13874-RB 24..425 17..418 2010 100 Plus
Obp56h-RA 593 CG13874-RA 24..425 17..418 2010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19815687..19816036 69..418 1750 100 Plus
2R 25286936 2R 19815577..19815630 17..70 270 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:03:32 has no hits.

BO16742.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:33 Download gff for BO16742.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:06 Download gff for BO16742.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:26 Download gff for BO16742.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 24..425 17..420 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:33 Download gff for BO16742.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 1..405 17..422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:18 Download gff for BO16742.complete
Subject Subject Range Query Range Percent Splice Strand
Obp56h-RA 24..425 17..420 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:18 Download gff for BO16742.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19815577..19815630 17..70 100 -> Plus
2R 19815689..19816036 71..420 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:26 Download gff for BO16742.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15703082..15703135 17..70 100 -> Plus
arm_2R 15703194..15703541 71..420 99   Plus

BO16742.pep Sequence

Translation from 16 to 436

> BO16742.pep
MKFTLFCIALAAFLSMGQCNPDFRQIMQQCMETNQVTEADLKEFMASGMQ
SSAKENLKCYTKCLMEKQGHLTNGQFNAQAMLDTLKNVPQIKDKMDEISS
GVNACKDIKGTNDCDTAFKVTMCLKEHKAIPGHHASFLDH

BO16742.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Obp56h-PB 134 CG13874-PB 1..134 1..134 715 100 Plus
Obp56h-PA 134 CG13874-PA 1..134 1..134 715 100 Plus
Obp56g-PA 131 CG13873-PA 1..128 1..125 153 28.2 Plus
Obp56g-PB 132 CG13873-PB 30..129 24..125 152 28.2 Plus
Obp56a-PA 139 CG11797-PA 16..135 8..131 141 28 Plus