Clone Sequence Records
BO16743.3prime Sequence
498 bp (498 high quality bases) assembled on 2006-10-13
> BO16743.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTTAATGTTGAACAGCCGCACGCCGT
GGAACTGCGGCAGCTTGGGAAGCGTGACGACCACCAGGGATATAAAGTTT
GGGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGGAA
AAGAACAATGGGAACAGCTGTGAGGAACTTGCGCGTTGTGGTCATCTGTA
CCCCGTCATCGATCTGTTCCCAGTGCGTCCAACGCCGGCTGGGATCGTTC
TCCGTGCTGAGCCAGGGAGCGCCCTTGATGACGTGCAGAAAGTACAGGTG
GGCTGCATTGTGAAGCAGGTTGGTAGCCGTCCAGGCCCATGGAATGCTAA
CGAAGGGCACTGATAAGAAGAGCAGGTGCACCGACAGCAGGCCCAGGAGG
TATGCTAGCCAAAATCCCCGGGCACTCAGCCAGGAGCTGTTTGGATTCGC
CTCGCCGTGGCCTCCCGCAATGGACGTCATGTCGACTGATAACTTCGT
BO16743.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14577-PA | 465 | ORMDL-RA | 1..462 | 480..19 | 2285 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-RA | 674 | CG14577-RA | 79..542 | 482..19 | 2305 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21635383..21635562 | 482..303 | 900 | 100 | Minus |
3L | 28110227 | 3L | 21635618..21635769 | 303..152 | 745 | 99.3 | Minus |
3L | 28110227 | 3L | 21635987..21636119 | 151..19 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:48:41 has no hits.
BO16743.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:30 Download gff for
BO16743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14577-PA | 1..465 | 18..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:06 Download gff for
BO16743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 70..550 | 8..495 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:22 Download gff for
BO16743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 70..550 | 8..495 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:22 Download gff for
BO16743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21635374..21635561 | 304..495 | 97 | -> | Minus |
3L | 21635618..21635769 | 152..303 | 99 | -> | Minus |
3L | 21635987..21636127 | 8..151 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:06 Download gff for
BO16743.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21628474..21628661 | 304..495 | 97 | -> | Minus |
arm_3L | 21628718..21628869 | 152..303 | 99 | -> | Minus |
arm_3L | 21629087..21629227 | 8..151 | 96 | | Minus |
BO16743.5prime Sequence
494 bp (494 high quality bases) assembled on 2006-10-13
> BO16743.5prime
GAAGTTATCAGTCGACATGACGTCCATTGCGGGAGGCCACGGCGAGGCGA
ATCCAAACAGCTCCTGGCTGAGTGCCCGGGGATTTTGGCTAGCATACCTC
CTGGGCCTGCTGTCGGTGCACCTGCTCTTCTTATCAGTGCCCTTCGTTAG
CATTCCATGGGCCTGGACGGCTACCAACCTGCTTCACAATGCAGCCCACC
TGTACTTTCTGCACGTCATCAAGGGCGCTCCCTGGCTCAGCACGGAGAAC
GATCCCAGCCGGCGTTGGACGCACTGGGAACAGATCGATGACGGGGTACA
GATGACCACAACGCGCAAGTTCCTCACAGCTGTTCCCATTGTTCTTTTCC
TACTTACCTGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAAC
TTTATATCCCTGGTGGTCGTCACGCTTCCCAAGCTGCCGCAGTTCCACGG
CGTGCGGCTGTTCAACATTAACAAGTACGCAAGCTTTCTAGACC
BO16743.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14577-PA | 465 | ORMDL-RA | 1..462 | 17..478 | 2285 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-RA | 674 | CG14577-RA | 79..542 | 15..478 | 2305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21635383..21635562 | 15..194 | 900 | 100 | Plus |
3L | 28110227 | 3L | 21635618..21635769 | 194..345 | 745 | 99.3 | Plus |
3L | 28110227 | 3L | 21635987..21636119 | 346..478 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:28:12 has no hits.
BO16743.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:31 Download gff for
BO16743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14577-PA | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:06 Download gff for
BO16743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 70..550 | 2..489 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:30 Download gff for
BO16743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 70..550 | 2..489 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:30 Download gff for
BO16743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21635618..21635769 | 194..345 | 99 | -> | Plus |
3L | 21635987..21636127 | 346..489 | 96 | | Plus |
3L | 21635374..21635561 | 2..193 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:06 Download gff for
BO16743.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21628474..21628661 | 2..193 | 97 | -> | Plus |
arm_3L | 21628718..21628869 | 194..345 | 99 | -> | Plus |
arm_3L | 21629087..21629227 | 346..489 | 96 | | Plus |
BO16743.complete Sequence
496 bp assembled on 2006-10-11
GenBank Submission: FJ633895
> BO16743.complete
GAAGTTATCAGTCGACATGACGTCCATTGCGGGAGGCCACGGCGAGGCGA
ATCCAAACAGCTCCTGGCTGAGTGCCCGGGGATTTTGGCTAGCATACCTC
CTGGGCCTGCTGTCGGTGCACCTGCTCTTCTTATCAGTGCCCTTCGTTAG
CATTCCATGGGCCTGGACGGCTACCAACCTGCTTCACAATGCAGCCCACC
TGTACTTTCTGCACGTCATCAAGGGCGCTCCCTGGCTCAGCACGGAGAAC
GATCCCAGCCGGCGTTGGACGCACTGGGAACAGATCGATGACGGGGTACA
GATGACCACAACGCGCAAGTTCCTCACAGCTGTTCCCATTGTTCTTTTCC
TACTTACCTGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAAC
TTTATATCCCTGGTGGTCGTCACGCTTCCCAAGCTGCCGCAGTTCCACGG
CGTGCGGCTGTTCAACATTAACAAGTACGCAAGCTTTCTAGACCAT
BO16743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-RA | 465 | CG14577-PA | 1..462 | 17..478 | 2295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-RA | 674 | CG14577-RA | 79..542 | 15..478 | 2305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21635383..21635562 | 15..194 | 900 | 100 | Plus |
3L | 28110227 | 3L | 21635618..21635769 | 194..345 | 745 | 99.3 | Plus |
3L | 28110227 | 3L | 21635987..21636119 | 346..478 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:17 has no hits.
BO16743.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:01 Download gff for
BO16743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:47 Download gff for
BO16743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:45 Download gff for
BO16743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 81..542 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:01 Download gff for
BO16743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:18 Download gff for
BO16743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ORMDL-RA | 81..542 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:18 Download gff for
BO16743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21635987..21636119 | 346..480 | 98 | | Plus |
3L | 21635385..21635561 | 17..193 | 100 | -> | Plus |
3L | 21635618..21635769 | 194..345 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:45 Download gff for
BO16743.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21628485..21628661 | 17..193 | 100 | -> | Plus |
arm_3L | 21628718..21628869 | 194..345 | 99 | -> | Plus |
arm_3L | 21629087..21629219 | 346..480 | 98 | | Plus |
BO16743.pep Sequence
Translation from 16 to 496
> BO16743.pep
MTSIAGGHGEANPNSSWLSARGFWLAYLLGLLSVHLLFLSVPFVSIPWAW
TATNLLHNAAHLYFLHVIKGAPWLSTENDPSRRWTHWEQIDDGVQMTTTR
KFLTAVPIVLFLLTCLYTRNNTEHFIPNFISLVVVTLPKLPQFHGVRLFN
INKYASFLDH
BO16743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ORMDL-PA | 154 | CG14577-PA | 1..154 | 1..154 | 835 | 100 | Plus |