Clone BO16743 Report

Search the DGRC for BO16743

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptORMDL-RA
Protein status:BO16743.pep: validated full length
Sequenced Size:496

Clone Sequence Records

BO16743.3prime Sequence

498 bp (498 high quality bases) assembled on 2006-10-13

> BO16743.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTTAATGTTGAACAGCCGCACGCCGT
GGAACTGCGGCAGCTTGGGAAGCGTGACGACCACCAGGGATATAAAGTTT
GGGATAAAGTGTTCCGTGTTGTTTCGGGTGTACAGACAGGTAAGTAGGAA
AAGAACAATGGGAACAGCTGTGAGGAACTTGCGCGTTGTGGTCATCTGTA
CCCCGTCATCGATCTGTTCCCAGTGCGTCCAACGCCGGCTGGGATCGTTC
TCCGTGCTGAGCCAGGGAGCGCCCTTGATGACGTGCAGAAAGTACAGGTG
GGCTGCATTGTGAAGCAGGTTGGTAGCCGTCCAGGCCCATGGAATGCTAA
CGAAGGGCACTGATAAGAAGAGCAGGTGCACCGACAGCAGGCCCAGGAGG
TATGCTAGCCAAAATCCCCGGGCACTCAGCCAGGAGCTGTTTGGATTCGC
CTCGCCGTGGCCTCCCGCAATGGACGTCATGTCGACTGATAACTTCGT

BO16743.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14577-PA 465 ORMDL-RA 1..462 480..19 2285 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-RA 674 CG14577-RA 79..542 482..19 2305 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21635383..21635562 482..303 900 100 Minus
3L 28110227 3L 21635618..21635769 303..152 745 99.3 Minus
3L 28110227 3L 21635987..21636119 151..19 665 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:48:41 has no hits.

BO16743.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:30 Download gff for BO16743.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14577-PA 1..465 18..480 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:06 Download gff for BO16743.3prime
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 70..550 8..495 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:22 Download gff for BO16743.3prime
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 70..550 8..495 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:22 Download gff for BO16743.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21635374..21635561 304..495 97 -> Minus
3L 21635618..21635769 152..303 99 -> Minus
3L 21635987..21636127 8..151 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:06 Download gff for BO16743.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21628474..21628661 304..495 97 -> Minus
arm_3L 21628718..21628869 152..303 99 -> Minus
arm_3L 21629087..21629227 8..151 96   Minus

BO16743.5prime Sequence

494 bp (494 high quality bases) assembled on 2006-10-13

> BO16743.5prime
GAAGTTATCAGTCGACATGACGTCCATTGCGGGAGGCCACGGCGAGGCGA
ATCCAAACAGCTCCTGGCTGAGTGCCCGGGGATTTTGGCTAGCATACCTC
CTGGGCCTGCTGTCGGTGCACCTGCTCTTCTTATCAGTGCCCTTCGTTAG
CATTCCATGGGCCTGGACGGCTACCAACCTGCTTCACAATGCAGCCCACC
TGTACTTTCTGCACGTCATCAAGGGCGCTCCCTGGCTCAGCACGGAGAAC
GATCCCAGCCGGCGTTGGACGCACTGGGAACAGATCGATGACGGGGTACA
GATGACCACAACGCGCAAGTTCCTCACAGCTGTTCCCATTGTTCTTTTCC
TACTTACCTGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAAC
TTTATATCCCTGGTGGTCGTCACGCTTCCCAAGCTGCCGCAGTTCCACGG
CGTGCGGCTGTTCAACATTAACAAGTACGCAAGCTTTCTAGACC

BO16743.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG14577-PA 465 ORMDL-RA 1..462 17..478 2285 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-RA 674 CG14577-RA 79..542 15..478 2305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21635383..21635562 15..194 900 100 Plus
3L 28110227 3L 21635618..21635769 194..345 745 99.3 Plus
3L 28110227 3L 21635987..21636119 346..478 665 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:28:12 has no hits.

BO16743.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:31 Download gff for BO16743.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14577-PA 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:06 Download gff for BO16743.5prime
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 70..550 2..489 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:30 Download gff for BO16743.5prime
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 70..550 2..489 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:30 Download gff for BO16743.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21635618..21635769 194..345 99 -> Plus
3L 21635987..21636127 346..489 96   Plus
3L 21635374..21635561 2..193 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:06 Download gff for BO16743.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21628474..21628661 2..193 97 -> Plus
arm_3L 21628718..21628869 194..345 99 -> Plus
arm_3L 21629087..21629227 346..489 96   Plus

BO16743.complete Sequence

496 bp assembled on 2006-10-11

GenBank Submission: FJ633895

> BO16743.complete
GAAGTTATCAGTCGACATGACGTCCATTGCGGGAGGCCACGGCGAGGCGA
ATCCAAACAGCTCCTGGCTGAGTGCCCGGGGATTTTGGCTAGCATACCTC
CTGGGCCTGCTGTCGGTGCACCTGCTCTTCTTATCAGTGCCCTTCGTTAG
CATTCCATGGGCCTGGACGGCTACCAACCTGCTTCACAATGCAGCCCACC
TGTACTTTCTGCACGTCATCAAGGGCGCTCCCTGGCTCAGCACGGAGAAC
GATCCCAGCCGGCGTTGGACGCACTGGGAACAGATCGATGACGGGGTACA
GATGACCACAACGCGCAAGTTCCTCACAGCTGTTCCCATTGTTCTTTTCC
TACTTACCTGTCTGTACACCCGAAACAACACGGAACACTTTATCCCAAAC
TTTATATCCCTGGTGGTCGTCACGCTTCCCAAGCTGCCGCAGTTCCACGG
CGTGCGGCTGTTCAACATTAACAAGTACGCAAGCTTTCTAGACCAT

BO16743.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-RA 465 CG14577-PA 1..462 17..478 2295 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-RA 674 CG14577-RA 79..542 15..478 2305 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21635383..21635562 15..194 900 100 Plus
3L 28110227 3L 21635618..21635769 194..345 745 99.3 Plus
3L 28110227 3L 21635987..21636119 346..478 665 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:20:17 has no hits.

BO16743.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:01 Download gff for BO16743.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:47 Download gff for BO16743.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:45 Download gff for BO16743.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 81..542 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:01 Download gff for BO16743.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:18 Download gff for BO16743.complete
Subject Subject Range Query Range Percent Splice Strand
ORMDL-RA 81..542 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:18 Download gff for BO16743.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21635987..21636119 346..480 98   Plus
3L 21635385..21635561 17..193 100 -> Plus
3L 21635618..21635769 194..345 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:45 Download gff for BO16743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21628485..21628661 17..193 100 -> Plus
arm_3L 21628718..21628869 194..345 99 -> Plus
arm_3L 21629087..21629219 346..480 98   Plus

BO16743.pep Sequence

Translation from 16 to 496

> BO16743.pep
MTSIAGGHGEANPNSSWLSARGFWLAYLLGLLSVHLLFLSVPFVSIPWAW
TATNLLHNAAHLYFLHVIKGAPWLSTENDPSRRWTHWEQIDDGVQMTTTR
KFLTAVPIVLFLLTCLYTRNNTEHFIPNFISLVVVTLPKLPQFHGVRLFN
INKYASFLDH

BO16743.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
ORMDL-PA 154 CG14577-PA 1..154 1..154 835 100 Plus