Clone Sequence Records
BO16744.3prime Sequence
377 bp (377 high quality bases) assembled on 2006-10-13
> BO16744.3prime
ATGGTCTAGAAAGCTTGCGAGCGCCGAGGCTCTCCGCGAGGCGACACTGC
TCCTCCAGGATTCGTCGAGCACACGGTTGTCCTGGATCAGAATGATCGTG
TGCTCGTTCTCGGTGGCCACCATCGTCTCCTGGCGGCGGGTGCGCAGCCG
CACGTAACTCAGCTCGTCCCCATTCTCCAAATCCTGCACCATGGATCGGG
CCAGAATCACCAGTGGCCTCATCCGATCGGCGTATATGCGGGCCACATTC
GCTGGCAAATTGGTCCGCACCGGAACTCCATTGCCATCGATCAGGATTGC
CCCCGTCACGCCTGGCAGCTGAACCAGCCGATCGAAGGTCATCTGCACAG
TGTTTGACGCCATGTCGACTGATAACT
BO16744.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15171-PA | 348 | robl37BC-RA | 1..345 | 363..19 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-RA | 667 | CG15171-RA | 130..475 | 364..19 | 1730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19010995..19011340 | 364..19 | 1730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:53:12 has no hits.
BO16744.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:31 Download gff for
BO16744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15171-PA | 1..348 | 15..363 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:20 Download gff for
BO16744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 127..478 | 15..370 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:02 Download gff for
BO16744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 127..478 | 15..370 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:02 Download gff for
BO16744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19010992..19011343 | 15..370 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:20 Download gff for
BO16744.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19010992..19011343 | 15..370 | 98 | | Minus |
BO16744.5prime Sequence
377 bp (377 high quality bases) assembled on 2006-10-13
> BO16744.5prime
GAAGTTATCACTCGACATGGCGTCAAACACTGTGCAGATGACCTTCGATC
GGCTGGTTCAGCTGCCAGGCGTGACGGGGGCAATCCTGATCGATGGCAAT
GGAGTTCCGGTGCGGACCAATTTGCCAGCGAATGTGGCCCGCATATACGC
CGATCGGATGAGGCCACTGGTGATTCTGGCCCGATCCATGGTGCAGGATT
TGGAGAATGGGGACGAGCTGAGTTACGTGCGGCTGCGCACCCGCCGCCAG
GAGACGATGGTGGCCACCGAGAACGAGCACACGATCATTCTGATCCAGGA
CAACCGTGTGCTCGACGAATCCTGGAGGAGCAGTGTCGCCTCGCGGAGAG
CCTCGGCGCTCGCAAGCTTTCTAGACC
BO16744.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15171-PA | 348 | robl37BC-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-RA | 667 | CG15171-RA | 130..475 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19010995..19011340 | 16..361 | 1730 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:07:36 has no hits.
BO16744.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:33 Download gff for
BO16744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15171-PA | 1..348 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:34 Download gff for
BO16744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 130..478 | 16..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:56 Download gff for
BO16744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 130..478 | 16..365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:56 Download gff for
BO16744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19010995..19011343 | 16..365 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:34 Download gff for
BO16744.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19010995..19011343 | 16..365 | 99 | | Plus |
BO16744.complete Sequence
379 bp assembled on 2006-10-11
GenBank Submission: FJ633896
> BO16744.complete
GAAGTTATCAGTCGACATGGCGTCAAACACTGTGCAGATGACCTTCGATC
GGCTGGTTCAGCTGCCAGGCGTGACGGGGGCAATCCTGATCGATGGCAAT
GGAGTTCCGGTGCGGACCAATTTGCCAGCGAATGTGGCCCGCATATACGC
CGATCGGATGAGGCCACTGGTGATTCTGGCCCGATCCATGGTGCAGGATT
TGGAGAATGGGGACGAGCTGAGTTACGTGCGGCTGCGCACCCGCCGCCAG
GAGACGATGGTGGCCACCGAGAACGAGCACACGATCATTCTGATCCAGGA
CAACCGTGTGCTCGACGAATCCTGGAGGAGCAGTGTCGCCTCGCGGAGAG
CCTCGGCGCTCGCAAGCTTTCTAGACCAT
BO16744.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-RA | 348 | CG15171-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-RA | 667 | CG15171-RA | 130..475 | 16..361 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19010995..19011340 | 16..361 | 1730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:54:29 has no hits.
BO16744.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:56 Download gff for
BO16744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 1..348 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:09 Download gff for
BO16744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 1..348 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:19 Download gff for
BO16744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 131..475 | 17..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:56 Download gff for
BO16744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 1..348 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:25 Download gff for
BO16744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl37BC-RA | 131..475 | 17..363 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:25 Download gff for
BO16744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19010996..19011340 | 17..363 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:19 Download gff for
BO16744.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19010996..19011340 | 17..363 | 99 | | Plus |
BO16744.pep Sequence
Translation from 16 to 379
> BO16744.pep
MASNTVQMTFDRLVQLPGVTGAILIDGNGVPVRTNLPANVARIYADRMRP
LVILARSMVQDLENGDELSYVRLRTRRQETMVATENEHTIILIQDNRVLD
ESWRSSVASRRASALASFLDH
BO16744.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl37BC-PA | 115 | CG15171-PA | 1..115 | 1..115 | 567 | 100 | Plus |
robl-PA | 97 | CG10751-PA | 2..94 | 3..95 | 155 | 33.3 | Plus |
robl22E-PB | 97 | CG10838-PB | 2..93 | 3..94 | 143 | 31.5 | Plus |
robl22E-PA | 97 | CG10838-PA | 2..93 | 3..94 | 143 | 31.5 | Plus |