Clone BO16744 Report

Search the DGRC for BO16744

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptrobl37BC-RA
Protein status:BO16744.pep:
Sequenced Size:379

Clone Sequence Records

BO16744.3prime Sequence

377 bp (377 high quality bases) assembled on 2006-10-13

> BO16744.3prime
ATGGTCTAGAAAGCTTGCGAGCGCCGAGGCTCTCCGCGAGGCGACACTGC
TCCTCCAGGATTCGTCGAGCACACGGTTGTCCTGGATCAGAATGATCGTG
TGCTCGTTCTCGGTGGCCACCATCGTCTCCTGGCGGCGGGTGCGCAGCCG
CACGTAACTCAGCTCGTCCCCATTCTCCAAATCCTGCACCATGGATCGGG
CCAGAATCACCAGTGGCCTCATCCGATCGGCGTATATGCGGGCCACATTC
GCTGGCAAATTGGTCCGCACCGGAACTCCATTGCCATCGATCAGGATTGC
CCCCGTCACGCCTGGCAGCTGAACCAGCCGATCGAAGGTCATCTGCACAG
TGTTTGACGCCATGTCGACTGATAACT

BO16744.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15171-PA 348 robl37BC-RA 1..345 363..19 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-RA 667 CG15171-RA 130..475 364..19 1730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19010995..19011340 364..19 1730 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:53:12 has no hits.

BO16744.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:31 Download gff for BO16744.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15171-PA 1..348 15..363 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:20 Download gff for BO16744.3prime
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 127..478 15..370 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:02 Download gff for BO16744.3prime
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 127..478 15..370 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:02 Download gff for BO16744.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19010992..19011343 15..370 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:20 Download gff for BO16744.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19010992..19011343 15..370 98   Minus

BO16744.5prime Sequence

377 bp (377 high quality bases) assembled on 2006-10-13

> BO16744.5prime
GAAGTTATCACTCGACATGGCGTCAAACACTGTGCAGATGACCTTCGATC
GGCTGGTTCAGCTGCCAGGCGTGACGGGGGCAATCCTGATCGATGGCAAT
GGAGTTCCGGTGCGGACCAATTTGCCAGCGAATGTGGCCCGCATATACGC
CGATCGGATGAGGCCACTGGTGATTCTGGCCCGATCCATGGTGCAGGATT
TGGAGAATGGGGACGAGCTGAGTTACGTGCGGCTGCGCACCCGCCGCCAG
GAGACGATGGTGGCCACCGAGAACGAGCACACGATCATTCTGATCCAGGA
CAACCGTGTGCTCGACGAATCCTGGAGGAGCAGTGTCGCCTCGCGGAGAG
CCTCGGCGCTCGCAAGCTTTCTAGACC

BO16744.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15171-PA 348 robl37BC-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-RA 667 CG15171-RA 130..475 16..361 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19010995..19011340 16..361 1730 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:07:36 has no hits.

BO16744.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:33 Download gff for BO16744.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15171-PA 1..348 17..365 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:34 Download gff for BO16744.5prime
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 130..478 16..365 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:56 Download gff for BO16744.5prime
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 130..478 16..365 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:56 Download gff for BO16744.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19010995..19011343 16..365 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:34 Download gff for BO16744.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19010995..19011343 16..365 99   Plus

BO16744.complete Sequence

379 bp assembled on 2006-10-11

GenBank Submission: FJ633896

> BO16744.complete
GAAGTTATCAGTCGACATGGCGTCAAACACTGTGCAGATGACCTTCGATC
GGCTGGTTCAGCTGCCAGGCGTGACGGGGGCAATCCTGATCGATGGCAAT
GGAGTTCCGGTGCGGACCAATTTGCCAGCGAATGTGGCCCGCATATACGC
CGATCGGATGAGGCCACTGGTGATTCTGGCCCGATCCATGGTGCAGGATT
TGGAGAATGGGGACGAGCTGAGTTACGTGCGGCTGCGCACCCGCCGCCAG
GAGACGATGGTGGCCACCGAGAACGAGCACACGATCATTCTGATCCAGGA
CAACCGTGTGCTCGACGAATCCTGGAGGAGCAGTGTCGCCTCGCGGAGAG
CCTCGGCGCTCGCAAGCTTTCTAGACCAT

BO16744.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-RA 348 CG15171-PA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-RA 667 CG15171-RA 130..475 16..361 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19010995..19011340 16..361 1730 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:54:29 has no hits.

BO16744.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:56 Download gff for BO16744.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 1..348 17..365 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:09 Download gff for BO16744.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 1..348 17..365 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:19 Download gff for BO16744.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 131..475 17..363 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:56 Download gff for BO16744.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 1..348 17..365 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:25 Download gff for BO16744.complete
Subject Subject Range Query Range Percent Splice Strand
robl37BC-RA 131..475 17..363 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:25 Download gff for BO16744.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19010996..19011340 17..363 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:19 Download gff for BO16744.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19010996..19011340 17..363 99   Plus

BO16744.pep Sequence

Translation from 16 to 379

> BO16744.pep
MASNTVQMTFDRLVQLPGVTGAILIDGNGVPVRTNLPANVARIYADRMRP
LVILARSMVQDLENGDELSYVRLRTRRQETMVATENEHTIILIQDNRVLD
ESWRSSVASRRASALASFLDH

BO16744.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
robl37BC-PA 115 CG15171-PA 1..115 1..115 567 100 Plus
robl-PA 97 CG10751-PA 2..94 3..95 155 33.3 Plus
robl22E-PB 97 CG10838-PB 2..93 3..94 143 31.5 Plus
robl22E-PA 97 CG10838-PA 2..93 3..94 143 31.5 Plus