Clone Sequence Records
BO16745.3prime Sequence
557 bp (557 high quality bases) assembled on 2006-10-13
> BO16745.3prime
ATGGTCTAGAAAGCTTGCAAGATCCTTGTGCGAGAACTTTAAGTGAAATT
TGCAGGCCTTCTCCGTGTAAAAACATTCGCCGCAGAAGCCGCACTTGAAG
GCCGGTCCGGAGTCGCTGCTGAACTCGTTGGTGGGAGTAGCAGCTCTTTT
GGTCGACACTGCTTCCGCCAGCACCGTGGGCAGTTGCTCATTCTTCGGTT
CCACCGGATGAGTTTGGGTTTGCGTGTGCGACTGGGATTTGCTGGCCTGG
CTGCGCCTTCGGCGCTGCTCGAACTTTAGGGCCACGTTGAACTCGCCGTG
GGCGCCCAGCCACTGGTGGCTGAACTCGTAGGCCATCGACAGCTTCTTCA
CGCAGATGCGGCAGATCTGTTTGGGATAGTCGTCCTCTGGGTCCAGTGGC
GGCAAGGAGGCGGGCAGGCAGGACGCTAGCATATCCGCAATGGGCACCAT
CTGGTCAAGCACTTGGGCACACTCATTGTAAATGGACAGCGATTCCAGGC
ATTCGTTTCCGCACGTGCGACAGAAGCTCTCGAATATGTCCATGTCGACT
GATAACT
BO16745.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15367-PA | 528 | Dip1-RA | 1..525 | 543..19 | 2625 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip1-RA | 691 | CG15367-RA | 56..580 | 543..19 | 2625 | 100 | Minus |
Dip1-RB | 694 | CG15367-RB | 56..583 | 543..19 | 2585 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:46:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9158677..9159076 | 543..144 | 2000 | 100 | Minus |
X | 23542271 | X | 9159138..9159264 | 145..19 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:46:47 has no hits.
BO16745.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:33 Download gff for
BO16745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15367-PA | 1..528 | 18..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:01:29 Download gff for
BO16745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 52..580 | 19..551 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:11:40 Download gff for
BO16745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 52..580 | 19..551 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:11:40 Download gff for
BO16745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9158673..9159076 | 144..551 | 99 | -> | Minus |
X | 9159140..9159264 | 19..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:01:29 Download gff for
BO16745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9052706..9053109 | 144..551 | 99 | -> | Minus |
arm_X | 9053173..9053297 | 19..143 | 100 | | Minus |
BO16745.5prime Sequence
557 bp (557 high quality bases) assembled on 2006-10-13
> BO16745.5prime
GAAGTTATCACTCGACATGGACATATTCGAGAGCTTCTGTCGCACGTGCG
GAAACGAATGCCTGGAATCGCTGTCCATTTACAATGAGTGTGCCCAAGTG
CTTGACCAGATGGTGCCCATTGCGGATATGCTAGCGTCCTGCCTGCCCGC
CTCCTTGCCGCCACTGGACCCAGAGGACGACTATCCCAAACAGATCTGCC
GCATCTGCGTGAAGAAGCTGTCGATGGCCTACGAGTTCAGCCACCAGTGG
CTGGGCGCCCACGGCGAGTTCAACGTGGCCCTAAAGTTCGAGCAGCGCCG
AAGGCGCAGCCAGGCCAGCAAATCCCAGTCGCACACGCAAACCCAAACTC
ATCCGGTGGAACCGAAGAATGAGCAACTGCCCACGGTGCTGGCGGAAGCA
GTGTCGACCAAAAGAGCTGCTACTCCCACCAACGAGTTCAGCAGCGACTC
CGGACCGGCCTTCAAGTGCGGCTTCTGCGGCGAATGTTTTTACACGGAGA
AGGCCTGCAAATTTCACTTAAAGTTCTCGCACAAGGATCTTGCAAGCTTT
CTAGACC
BO16745.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15367-PA | 528 | Dip1-RA | 1..525 | 17..541 | 2625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip1-RA | 691 | CG15367-RA | 56..580 | 17..541 | 2625 | 100 | Plus |
Dip1-RB | 694 | CG15367-RB | 56..583 | 17..541 | 2585 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9158677..9159076 | 17..416 | 2000 | 100 | Plus |
X | 23542271 | X | 9159138..9159264 | 415..541 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:16:26 has no hits.
BO16745.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:34 Download gff for
BO16745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15367-PA | 1..528 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:09:31 Download gff for
BO16745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 52..580 | 9..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:18 Download gff for
BO16745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 52..580 | 9..541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:18 Download gff for
BO16745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9158673..9159076 | 9..416 | 99 | -> | Plus |
X | 9159140..9159264 | 417..541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:09:31 Download gff for
BO16745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9052706..9053109 | 9..416 | 99 | -> | Plus |
arm_X | 9053173..9053297 | 417..541 | 100 | | Plus |
BO16745.complete Sequence
559 bp assembled on 2007-10-17
GenBank Submission: FJ633897
> BO16745.complete
GAAGTTATCAGTCGACATGGACATATTCGAGAGCTTCTGTCGCACGTGCG
GAAACGAATGCCTGGAATCGCTGTCCATTTACAATGAGTGTGCCCAAGTG
CTTGACCAGATGGTGCCCATTGCGGATATGCTAGCGTCCTGCCTGCCCGC
CTCCTTGCCGCCACTGGACCCAGAGGACGACTATCCCAAACAGATCTGCC
GCATCTGCGTGAAGAAGCTGTCGATGGCCTACGAGTTCAGCCACCAGTGG
CTGGGCGCCCACGGCGAGTTCAACGTGGCCCTAAAGTTCGAGCAGCGCCG
AAGGCGCAGCCAGGCCAGCAAATCCCAGTCGCACACGCAAACCCAAACTC
ATCCGGTGGAACCGAAGAATGAGCAACTGCCCACGGTGCTGGCGGAAGCA
GTGTCGACCAAAAGAGCTGCTACTCCCACCAACGAGTTCAGCAGCGACTC
CGGACCGGCCTTCAAGTGCGGCTTCTGCGGCGAATGTTTTTACACGGAGA
AGGCCTGCAAATTTCACTTAAAGTTCTCGCACAAGGATCTTGCAAGCTTT
CTAGACCAT
BO16745.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip1-RA | 528 | CG15367-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
Dip1-RB | 531 | CG15367-PB | 1..528 | 17..541 | 2560 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip1-RA | 691 | CG15367-RA | 56..580 | 17..541 | 2625 | 100 | Plus |
Dip1-RB | 694 | CG15367-RB | 56..583 | 17..541 | 2560 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9158677..9159076 | 17..416 | 2000 | 100 | Plus |
X | 23542271 | X | 9159138..9159264 | 415..541 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:07:21 has no hits.
BO16745.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:14 Download gff for
BO16745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 1..528 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:50 Download gff for
BO16745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 23..551 | 9..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:29 Download gff for
BO16745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 56..580 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:50 Download gff for
BO16745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 27..551 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:10 Download gff for
BO16745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip1-RA | 56..580 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:10 Download gff for
BO16745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9158677..9159076 | 17..416 | 100 | -> | Plus |
X | 9159140..9159264 | 417..543 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:29 Download gff for
BO16745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9052710..9053109 | 17..416 | 100 | -> | Plus |
arm_X | 9053173..9053297 | 417..543 | 98 | | Plus |
BO16745.pep Sequence
Translation from 16 to 559
> BO16745.pep
MDIFESFCRTCGNECLESLSIYNECAQVLDQMVPIADMLASCLPASLPPL
DPEDDYPKQICRICVKKLSMAYEFSHQWLGAHGEFNVALKFEQRRRRSQA
SKSQSHTQTQTHPVEPKNEQLPTVLAEAVSTKRAATPTNEFSSDSGPAFK
CGFCGECFYTEKACKFHLKFSHKDLASFLDH
BO16745.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip1-PA | 175 | CG15367-PA | 1..175 | 1..175 | 947 | 100 | Plus |
Dip1-PB | 176 | CG15367-PB | 1..176 | 1..175 | 935 | 99.4 | Plus |