Clone Sequence Records
BO16752.3prime Sequence
407 bp (396 high quality bases) assembled on 2006-10-13
> BO16752.3prime
ATGGTCTAGAAAGCTTGCATGCTTGGTAATGGACTGATAGCATTTCAAGA
TTTCGTAGCCCAATTCACATTTTCCTGAAGCCTTGATGGAATGACACTTT
TCTTCAGCCTTTTCCAATTCATCTGTGTCAGTAATGCCATACTTTTTTTC
AAGTACTTTCCTCGGTTGCTCCGAACTGATCGCATCATTTGCAATAACAC
CTTTCACTTCCAGTAAGCAGTGATAAAAACACTTGCTTTGAAGAGAGTCT
TCTTTAGCATCAAATTTTGTATTTTCTGTAATTGTATACCCCAGCTGCCG
TTTCAAGCAGGCTTTTATTTTTTCAGAAGATTTCATACAAAATGCTTGGA
GCCAGATAGCAGAGATGAAAATGAACAACAGGAATACTTTCATGTCGACT
GATAACT
BO16752.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30450-PA | 378 | Obp56f-RA | 1..375 | 393..19 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56f-RA | 528 | CG30450-RA | 25..399 | 393..19 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19713532..19713847 | 334..19 | 1580 | 100 | Minus |
| 2R | 25286936 | 2R | 19713419..19713478 | 393..334 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:51:59 has no hits.
BO16752.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:42 Download gff for
BO16752.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30450-PA | 1..378 | 18..393 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:21:45 Download gff for
BO16752.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 20..406 | 11..398 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:25 Download gff for
BO16752.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 20..406 | 11..398 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:25 Download gff for
BO16752.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19713414..19713478 | 334..398 | 95 | -> | Minus |
| 2R | 19713533..19713854 | 11..333 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:21:45 Download gff for
BO16752.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15600919..15600983 | 334..398 | 95 | -> | Minus |
| arm_2R | 15601038..15601359 | 11..333 | 98 | | Minus |
BO16752.5prime Sequence
407 bp (407 high quality bases) assembled on 2006-10-13
> BO16752.5prime
GAAGTTATCCTTTTAAATGAAAGTATTCCTGTTGTTCATTTTCATCTCTG
CTATCTGGCTCCAAGCATTTTGTATGAAATCTTCTCAAAAAATAAAAGCC
TGCTTGAAACGGCAGCTGGGGTATACAATTACAGAAAATACAAAATTTGA
TGCTAAAGAAGACTCTCTTCAAAGCAAGTGTTTTTATCACTGCTTACTGG
AAGTGAAAGGTGTTATTGCAAATGATGCGATCAGTTCGGAGCAACCGAGG
AAAGTACTTGAAAAAAAGTATGGCATTACTGACACAGATGAATTGGAAAA
GGCTGAAGAAAAGTGTCATTCCATCAAGGCTTCAGGAAAATGTGAATTGG
GCTACGAAATCTTGAAATGCTATCAATCCATTACCAAGCATGCAAGCTTT
CTAGACC
BO16752.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30450-PA | 378 | Obp56f-RA | 1..375 | 17..391 | 1825 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56f-RA | 528 | CG30450-RA | 25..399 | 17..391 | 1845 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19713532..19713847 | 76..391 | 1550 | 99.4 | Plus |
| 2R | 25286936 | 2R | 19713419..19713478 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:07:40 has no hits.
BO16752.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:42 Download gff for
BO16752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30450-PA | 1..378 | 17..392 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:36 Download gff for
BO16752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 23..406 | 13..399 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:04 Download gff for
BO16752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 23..406 | 13..399 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:04 Download gff for
BO16752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19713417..19713478 | 13..76 | 96 | -> | Plus |
| 2R | 19713533..19713854 | 77..399 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:36 Download gff for
BO16752.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15600922..15600983 | 13..76 | 96 | -> | Plus |
| arm_2R | 15601038..15601359 | 77..399 | 98 | | Plus |
BO16752.complete Sequence
409 bp assembled on 2006-10-11
GenBank Submission: FJ633899
> BO16752.complete
GAAGTTATCAGTCGACATGAAAGTATTCCTGTTGTTCATTTTCATCTCTG
CTATCTGGCTCCAAGCATTTTGTATGAAATCTTCTGAAAAAATAAAAGCC
TGCTTGAAACGGCAGCTGGGGTATACAATTACAGAAAATACAAAATTTGA
TGCTAAAGAAGACTCTCTTCAAAGCAAGTGTTTTTATCACTGCTTACTGG
AAGTGAAAGGTGTTATTGCAAATGATGCGATCAGTTCGGAGCAACCGAGG
AAAGTACTTGAAAAAAAGTATGGCATTACTGACACAGATGAATTGGAAAA
GGCTGAAGAAAAGTGTCATTCCATCAAGGCTTCAGGAAAATGTGAATTGG
GCTACGAAATCTTGAAATGCTATCAGTCCATTACCAAGCATGCAAGCTTT
CTAGACCAT
BO16752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56f-RA | 378 | CG30450-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56f-RA | 528 | CG30450-RA | 25..399 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19713532..19713847 | 76..391 | 1580 | 100 | Plus |
| 2R | 25286936 | 2R | 19713419..19713478 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:40:57 has no hits.
BO16752.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:01 Download gff for
BO16752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 1..378 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:17 Download gff for
BO16752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 1..378 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:33 Download gff for
BO16752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 25..399 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:02 Download gff for
BO16752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 1..378 | 17..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:30 Download gff for
BO16752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp56f-RA | 25..399 | 17..393 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:30 Download gff for
BO16752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19713533..19713847 | 77..393 | 99 | | Plus |
| 2R | 19713419..19713478 | 17..76 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:33 Download gff for
BO16752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15600924..15600983 | 17..76 | 100 | -> | Plus |
| arm_2R | 15601038..15601352 | 77..393 | 99 | | Plus |
BO16752.pep Sequence
Translation from 16 to 409
> BO16752.pep
MKVFLLFIFISAIWLQAFCMKSSEKIKACLKRQLGYTITENTKFDAKEDS
LQSKCFYHCLLEVKGVIANDAISSEQPRKVLEKKYGITDTDELEKAEEKC
HSIKASGKCELGYEILKCYQSITKHASFLDH
BO16752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp56f-PA | 125 | CG30450-PA | 1..125 | 1..125 | 653 | 100 | Plus |
| Obp56e-PA | 132 | CG8462-PA | 1..132 | 1..128 | 139 | 29.3 | Plus |
