Clone Sequence Records
BO16754.3prime Sequence
458 bp (458 high quality bases) assembled on 2006-10-13
> BO16754.3prime
ATGGTCTAGAAAGCTTGCGTTATAGTCCTCGATTATGTATGCATGGTTGG
ATTTCCTTTCCTCCCTTTTCTTATTAAACAGAGACGAAATATACCGGGTT
CCGACTCTGCCTAGGAAGTGTCCAAATATGTTTCCAAATGATCCTCCTTG
AGGTGGTGCACCATCAACCAAAACTGCCCGGTATTCTCTGTAATCATGAA
TAAACCTTTCAAATTGTTGCCTGTCTGCGTCGGATAGAGGAACATCTGTA
GGATATCGTTGATAAAAAGCGATTAGCTGCGGAATATTTTTCTCCTTAAT
GGAGTCATTCACAAATGGATTGTGAAAGATGTTAAGCAAATAATTCCTGT
GTTCCTCATAACTTGAACTGTTTGTGTTAGCAGTTGCAAAAGGAACTATG
CCTAAGAACACGCATATTAGCAAGCTGCCAATAGAAAGCCCCATGTCGAC
TGATAACT
BO16754.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31193-PA | 429 | TotX-RA | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-RA | 602 | CG31193-RA | 31..456 | 444..19 | 2130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20905063..20905488 | 19..444 | 2130 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:45:39 has no hits.
BO16754.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:45 Download gff for
BO16754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31193-PA | 1..429 | 15..444 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:56 Download gff for
BO16754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 11..451 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:50 Download gff for
BO16754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 11..451 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:50 Download gff for
BO16754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20905056..20905492 | 11..451 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:56 Download gff for
BO16754.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16730778..16731214 | 11..451 | 98 | | Plus |
BO16754.5prime Sequence
458 bp (458 high quality bases) assembled on 2006-10-13
> BO16754.5prime
GAAGTTATCAGTCGACATGGGGCTTTCTATTGGCAGCTTGCTAATATGCG
TGTTCTTAGGCATAGTTCCTTTTGCAACTGCTAACACAAACAGTTCAAGT
TATGAGGAACACAGGAATTATTTGCTTAACATCTTTCACAATCCATTTGT
GAATGACTCCATTAAGGAGAAAAATATTCCGCAGCTAATCGCTTTTTATC
AACGATATCCTACAGATGTTCCTCTATCCGACGCAGACAGGCAACAATTT
GAAAGGTTTATTCATGATTACAGAGAATACCGGGCAGTTTTGGTTGATGG
TGCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAG
GCAGAGTCGGAACCCGGTATATTTCGTCTCTGTTTAATAAGAAAAGGGAG
GAAAGGAAATCCAACCATGCATACATAATCGAGGACTATAACGCAAGCTT
TCTAGACC
BO16754.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31193-PA | 429 | TotX-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-RA | 602 | CG31193-RA | 31..456 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20905063..20905488 | 442..17 | 2130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:28:36 has no hits.
BO16754.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:45 Download gff for
BO16754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31193-PA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:08 Download gff for
BO16754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:33 Download gff for
BO16754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 10..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:33 Download gff for
BO16754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20905056..20905492 | 10..450 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:08 Download gff for
BO16754.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16730778..16731214 | 10..450 | 98 | | Minus |
BO16754.complete Sequence
460 bp assembled on 2006-10-11
GenBank Submission: FJ633900
> BO16754.complete
GAAGTTATCAGTCGACATGGGGCTTTCTATTGGCAGCTTGCTAATATGCG
TGTTCTTAGGCATAGTTCCTTTTGCAACTGCTAACACAAACAGTTCAAGT
TATGAGGAACACAGGAATTATTTGCTTAACATCTTTCACAATCCATTTGT
GAATGACTCCATTAAGGAGAAAAATATTCCGCAGCTAATCGCTTTTTATC
AACGATATCCTACAGATGTTCCTCTATCCGACGCAGACAGGCAACAATTT
GAAAGGTTTATTCATGATTACAGAGAATACCGGGCAGTTTTGGTTGATGG
TGCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAG
GCAGAGTCGGAACCCGGTATATTTCGTCTCTGTTTAATAAGAAAAGGGAG
GAAAGGAAATCCAACCATGCATACATAATCGAGGACTATAACGCAAGCTT
TCTAGACCAT
BO16754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-RA | 429 | CG31193-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-RA | 602 | CG31193-RA | 31..456 | 17..442 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20905063..20905488 | 442..17 | 2130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:27:33 has no hits.
BO16754.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:38 Download gff for
BO16754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 1..429 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:15 Download gff for
BO16754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:55 Download gff for
BO16754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 31..456 | 17..444 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:39 Download gff for
BO16754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 23..463 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:24 Download gff for
BO16754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotX-RA | 31..456 | 17..444 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:24 Download gff for
BO16754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20905061..20905488 | 17..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:55 Download gff for
BO16754.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16730783..16731210 | 17..444 | 99 | | Minus |
BO16754.pep Sequence
Translation from 16 to 460
> BO16754.pep
MGLSIGSLLICVFLGIVPFATANTNSSSYEEHRNYLLNIFHNPFVNDSIK
EKNIPQLIAFYQRYPTDVPLSDADRQQFERFIHDYREYRAVLVDGAPPQG
GSFGNIFGHFLGRVGTRYISSLFNKKREERKSNHAYIIEDYNASFLDH
BO16754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotX-PA | 142 | CG31193-PA | 1..142 | 1..142 | 752 | 100 | Plus |