Clone BO16754 Report

Search the DGRC for BO16754

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptTotX-RA
Protein status:BO16754.pep: validated full length
Sequenced Size:460

Clone Sequence Records

BO16754.3prime Sequence

458 bp (458 high quality bases) assembled on 2006-10-13

> BO16754.3prime
ATGGTCTAGAAAGCTTGCGTTATAGTCCTCGATTATGTATGCATGGTTGG
ATTTCCTTTCCTCCCTTTTCTTATTAAACAGAGACGAAATATACCGGGTT
CCGACTCTGCCTAGGAAGTGTCCAAATATGTTTCCAAATGATCCTCCTTG
AGGTGGTGCACCATCAACCAAAACTGCCCGGTATTCTCTGTAATCATGAA
TAAACCTTTCAAATTGTTGCCTGTCTGCGTCGGATAGAGGAACATCTGTA
GGATATCGTTGATAAAAAGCGATTAGCTGCGGAATATTTTTCTCCTTAAT
GGAGTCATTCACAAATGGATTGTGAAAGATGTTAAGCAAATAATTCCTGT
GTTCCTCATAACTTGAACTGTTTGTGTTAGCAGTTGCAAAAGGAACTATG
CCTAAGAACACGCATATTAGCAAGCTGCCAATAGAAAGCCCCATGTCGAC
TGATAACT

BO16754.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31193-PA 429 TotX-RA 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-RA 602 CG31193-RA 31..456 444..19 2130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20905063..20905488 19..444 2130 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:45:39 has no hits.

BO16754.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:45 Download gff for BO16754.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31193-PA 1..429 15..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:56 Download gff for BO16754.3prime
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 11..451 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:50 Download gff for BO16754.3prime
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 11..451 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:50 Download gff for BO16754.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20905056..20905492 11..451 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:56 Download gff for BO16754.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16730778..16731214 11..451 98   Plus

BO16754.5prime Sequence

458 bp (458 high quality bases) assembled on 2006-10-13

> BO16754.5prime
GAAGTTATCAGTCGACATGGGGCTTTCTATTGGCAGCTTGCTAATATGCG
TGTTCTTAGGCATAGTTCCTTTTGCAACTGCTAACACAAACAGTTCAAGT
TATGAGGAACACAGGAATTATTTGCTTAACATCTTTCACAATCCATTTGT
GAATGACTCCATTAAGGAGAAAAATATTCCGCAGCTAATCGCTTTTTATC
AACGATATCCTACAGATGTTCCTCTATCCGACGCAGACAGGCAACAATTT
GAAAGGTTTATTCATGATTACAGAGAATACCGGGCAGTTTTGGTTGATGG
TGCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAG
GCAGAGTCGGAACCCGGTATATTTCGTCTCTGTTTAATAAGAAAAGGGAG
GAAAGGAAATCCAACCATGCATACATAATCGAGGACTATAACGCAAGCTT
TCTAGACC

BO16754.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31193-PA 429 TotX-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-RA 602 CG31193-RA 31..456 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20905063..20905488 442..17 2130 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:28:36 has no hits.

BO16754.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:45 Download gff for BO16754.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31193-PA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:08 Download gff for BO16754.5prime
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 10..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:33 Download gff for BO16754.5prime
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 10..450 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:33 Download gff for BO16754.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20905056..20905492 10..450 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:08 Download gff for BO16754.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16730778..16731214 10..450 98   Minus

BO16754.complete Sequence

460 bp assembled on 2006-10-11

GenBank Submission: FJ633900

> BO16754.complete
GAAGTTATCAGTCGACATGGGGCTTTCTATTGGCAGCTTGCTAATATGCG
TGTTCTTAGGCATAGTTCCTTTTGCAACTGCTAACACAAACAGTTCAAGT
TATGAGGAACACAGGAATTATTTGCTTAACATCTTTCACAATCCATTTGT
GAATGACTCCATTAAGGAGAAAAATATTCCGCAGCTAATCGCTTTTTATC
AACGATATCCTACAGATGTTCCTCTATCCGACGCAGACAGGCAACAATTT
GAAAGGTTTATTCATGATTACAGAGAATACCGGGCAGTTTTGGTTGATGG
TGCACCACCTCAAGGAGGATCATTTGGAAACATATTTGGACACTTCCTAG
GCAGAGTCGGAACCCGGTATATTTCGTCTCTGTTTAATAAGAAAAGGGAG
GAAAGGAAATCCAACCATGCATACATAATCGAGGACTATAACGCAAGCTT
TCTAGACCAT

BO16754.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-RA 429 CG31193-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-RA 602 CG31193-RA 31..456 17..442 2130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20905063..20905488 442..17 2130 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:27:33 has no hits.

BO16754.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:38 Download gff for BO16754.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 1..429 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:15 Download gff for BO16754.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 10..450 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:55 Download gff for BO16754.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 31..456 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:39 Download gff for BO16754.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 23..463 10..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:24 Download gff for BO16754.complete
Subject Subject Range Query Range Percent Splice Strand
TotX-RA 31..456 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:24 Download gff for BO16754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20905061..20905488 17..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:55 Download gff for BO16754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16730783..16731210 17..444 99   Minus

BO16754.pep Sequence

Translation from 16 to 460

> BO16754.pep
MGLSIGSLLICVFLGIVPFATANTNSSSYEEHRNYLLNIFHNPFVNDSIK
EKNIPQLIAFYQRYPTDVPLSDADRQQFERFIHDYREYRAVLVDGAPPQG
GSFGNIFGHFLGRVGTRYISSLFNKKREERKSNHAYIIEDYNASFLDH

BO16754.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
TotX-PA 142 CG31193-PA 1..142 1..142 752 100 Plus