Clone Sequence Records
BO16758.3prime Sequence
416 bp (416 high quality bases) assembled on 2006-10-13
> BO16758.3prime
ATGGTCTAGAAAGCTTGCCCACATGGCGCGCTGGACGCCGGACAGCTTAT
TGTAGTCGGCGAGGTGGCGCCACACGATTCGACTGAGCCTGTACTTGTGG
ACAACTCCGCGCGGACGTGACGTAAGCGCGCAGCGTTCCCTCACCCGGAC
GAGCGATGAGTCCCGAGGAAAAGCAGCGATCTCGGCGTCGGCTACCTCGC
GTAGCTCCGGCGGCAGGATGTCGTTCTTGCGCAGCGAGTTGACTCGCAGC
CGCTCCACGGCGTTCTCCTTGACGCACTTGCGCCGCTTTACGTCGCGAAT
CATCTTCCAATCGGCATACTTTGTGCGCACCTGCTGCAGCCCGCAGCCGG
CTATTTGCACGGACTGGCACACAAAACCCCCGATCCTGGCCAGAGAATTC
ATGTCGACTGATAACT
BO16758.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32531-PA | 387 | mRpS14-RA | 1..384 | 402..19 | 1920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS14-RB | 797 | CG32531-RB | 361..746 | 404..19 | 1930 | 100 | Minus |
mRpS14-RA | 476 | CG32531-RA | 40..425 | 404..19 | 1930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19479433..19479754 | 19..340 | 1610 | 100 | Plus |
X | 23542271 | X | 19479814..19479878 | 340..404 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:28:02 has no hits.
BO16758.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:50 Download gff for
BO16758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32531-PA | 1..387 | 18..402 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:53 Download gff for
BO16758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 35..429 | 13..410 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:06 Download gff for
BO16758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 35..429 | 13..410 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:06 Download gff for
BO16758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19479429..19479753 | 13..339 | 99 | <- | Plus |
X | 19479814..19479883 | 340..410 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:53 Download gff for
BO16758.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19373462..19373786 | 13..339 | 99 | <- | Plus |
arm_X | 19373847..19373916 | 340..410 | 95 | | Plus |
BO16758.5prime Sequence
416 bp (416 high quality bases) assembled on 2006-10-13
> BO16758.5prime
GAAGTTATCCCTTGACATGAATTCTCTGGCCAGGATCGGGGGTTTTGTGT
GCCAGTCCGTGCAAATAGCCGGCTGCGGGCTGCATCAGGTGCGCACAAAG
TATGCCGATTGGAAGATGATTCGCGACGTAAAGCGGCGCAAGTGCGTCAA
GGAGAACGCCGTGGAGCGGCTGCGAGTCAACTCGCTGCGCAAGAACGACA
TCCTGCCGCCGGAGCTACGCGAGGTAGCCGACGCCGAGATCGCTGCTTTT
CCTCGGGACTCATCGCTCGTCCGGGTGAGGGAACGCTGCGCGCTTACGTC
ACGTCCGCGCGGAGTTGTCCACAAGTACAGGCTCAGTCGAATCGTGTGGC
GCCACCTCGCCGACTACAATAAGCTGTCCGGCGTCCAGCGCGCCATGTGG
GCAAGCTTTCTAGACC
BO16758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32531-PA | 387 | mRpS14-RA | 1..384 | 17..400 | 1895 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS14-RB | 797 | CG32531-RB | 361..746 | 15..400 | 1915 | 99.7 | Plus |
mRpS14-RA | 476 | CG32531-RA | 40..425 | 15..400 | 1915 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19479433..19479754 | 400..79 | 1595 | 99.7 | Minus |
X | 23542271 | X | 19479814..19479878 | 79..15 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:28:25 has no hits.
BO16758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:51 Download gff for
BO16758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32531-PA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:58 Download gff for
BO16758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 40..429 | 15..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:14 Download gff for
BO16758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 40..429 | 15..406 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:14 Download gff for
BO16758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19479429..19479753 | 80..406 | 98 | <- | Minus |
X | 19479814..19479878 | 15..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:58 Download gff for
BO16758.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19373462..19373786 | 80..406 | 98 | <- | Minus |
arm_X | 19373847..19373911 | 15..79 | 100 | | Minus |
BO16758.complete Sequence
418 bp assembled on 2006-10-11
GenBank Submission: FJ633901
> BO16758.complete
GAAGTTATCAGTCGACATGAATTCTCTGGCCAGGATCGGGGGTTTTGTGT
GCCAGTCCGTGCAAATAGCCGGCTGCGGGCTGCAGCAGGTGCGCACAAAG
TATGCCGATTGGAAGATGATTCGCGACGTAAAGCGGCGCAAGTGCGTCAA
GGAGAACGCCGTGGAGCGGCTGCGAGTCAACTCGCTGCGCAAGAACGACA
TCCTGCCGCCGGAGCTACGCGAGGTAGCCGACGCCGAGATCGCTGCTTTT
CCTCGGGACTCATCGCTCGTCCGGGTGAGGGAACGCTGCGCGCTTACGTC
ACGTCCGCGCGGAGTTGTCCACAAGTACAGGCTCAGTCGAATCGTGTGGC
GCCACCTCGCCGACTACAATAAGCTGTCCGGCGTCCAGCGCGCCATGTGG
GCAAGCTTTCTAGACCAT
BO16758.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS14-RB | 387 | CG32531-PB | 1..384 | 17..400 | 1920 | 100 | Plus |
mRpS14-RA | 387 | CG32531-PA | 1..384 | 17..400 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS14-RB | 797 | CG32531-RB | 361..746 | 15..400 | 1930 | 100 | Plus |
mRpS14-RA | 476 | CG32531-RA | 40..425 | 15..400 | 1930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19479433..19479754 | 400..79 | 1610 | 100 | Minus |
X | 23542271 | X | 19479814..19479878 | 79..15 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:47:59 has no hits.
BO16758.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:03 Download gff for
BO16758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:21 Download gff for
BO16758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:19 Download gff for
BO16758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 42..425 | 17..402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:04 Download gff for
BO16758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 1..387 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:07 Download gff for
BO16758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS14-RA | 42..425 | 17..402 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:07 Download gff for
BO16758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19479429..19479753 | 80..402 | 99 | <- | Minus |
X | 19479814..19479876 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:19 Download gff for
BO16758.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19373462..19373786 | 80..402 | 99 | <- | Minus |
arm_X | 19373847..19373909 | 17..79 | 100 | | Minus |
BO16758.pep Sequence
Translation from 16 to 418
> BO16758.pep
MNSLARIGGFVCQSVQIAGCGLQQVRTKYADWKMIRDVKRRKCVKENAVE
RLRVNSLRKNDILPPELREVADAEIAAFPRDSSLVRVRERCALTSRPRGV
VHKYRLSRIVWRHLADYNKLSGVQRAMWASFLDH
BO16758.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS14-PB | 128 | CG32531-PB | 1..128 | 1..128 | 663 | 100 | Plus |
mRpS14-PA | 128 | CG32531-PA | 1..128 | 1..128 | 663 | 100 | Plus |