Clone BO16758 Report

Search the DGRC for BO16758

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS14-RA
Protein status:BO16758.pep: validated full length
Sequenced Size:418

Clone Sequence Records

BO16758.3prime Sequence

416 bp (416 high quality bases) assembled on 2006-10-13

> BO16758.3prime
ATGGTCTAGAAAGCTTGCCCACATGGCGCGCTGGACGCCGGACAGCTTAT
TGTAGTCGGCGAGGTGGCGCCACACGATTCGACTGAGCCTGTACTTGTGG
ACAACTCCGCGCGGACGTGACGTAAGCGCGCAGCGTTCCCTCACCCGGAC
GAGCGATGAGTCCCGAGGAAAAGCAGCGATCTCGGCGTCGGCTACCTCGC
GTAGCTCCGGCGGCAGGATGTCGTTCTTGCGCAGCGAGTTGACTCGCAGC
CGCTCCACGGCGTTCTCCTTGACGCACTTGCGCCGCTTTACGTCGCGAAT
CATCTTCCAATCGGCATACTTTGTGCGCACCTGCTGCAGCCCGCAGCCGG
CTATTTGCACGGACTGGCACACAAAACCCCCGATCCTGGCCAGAGAATTC
ATGTCGACTGATAACT

BO16758.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32531-PA 387 mRpS14-RA 1..384 402..19 1920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-RB 797 CG32531-RB 361..746 404..19 1930 100 Minus
mRpS14-RA 476 CG32531-RA 40..425 404..19 1930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19479433..19479754 19..340 1610 100 Plus
X 23542271 X 19479814..19479878 340..404 325 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:28:02 has no hits.

BO16758.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:50 Download gff for BO16758.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32531-PA 1..387 18..402 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:53 Download gff for BO16758.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 35..429 13..410 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:04:06 Download gff for BO16758.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 35..429 13..410 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:04:06 Download gff for BO16758.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19479429..19479753 13..339 99 <- Plus
X 19479814..19479883 340..410 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:53 Download gff for BO16758.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19373462..19373786 13..339 99 <- Plus
arm_X 19373847..19373916 340..410 95   Plus

BO16758.5prime Sequence

416 bp (416 high quality bases) assembled on 2006-10-13

> BO16758.5prime
GAAGTTATCCCTTGACATGAATTCTCTGGCCAGGATCGGGGGTTTTGTGT
GCCAGTCCGTGCAAATAGCCGGCTGCGGGCTGCATCAGGTGCGCACAAAG
TATGCCGATTGGAAGATGATTCGCGACGTAAAGCGGCGCAAGTGCGTCAA
GGAGAACGCCGTGGAGCGGCTGCGAGTCAACTCGCTGCGCAAGAACGACA
TCCTGCCGCCGGAGCTACGCGAGGTAGCCGACGCCGAGATCGCTGCTTTT
CCTCGGGACTCATCGCTCGTCCGGGTGAGGGAACGCTGCGCGCTTACGTC
ACGTCCGCGCGGAGTTGTCCACAAGTACAGGCTCAGTCGAATCGTGTGGC
GCCACCTCGCCGACTACAATAAGCTGTCCGGCGTCCAGCGCGCCATGTGG
GCAAGCTTTCTAGACC

BO16758.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32531-PA 387 mRpS14-RA 1..384 17..400 1895 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-RB 797 CG32531-RB 361..746 15..400 1915 99.7 Plus
mRpS14-RA 476 CG32531-RA 40..425 15..400 1915 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19479433..19479754 400..79 1595 99.7 Minus
X 23542271 X 19479814..19479878 79..15 325 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:28:25 has no hits.

BO16758.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:51 Download gff for BO16758.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32531-PA 1..387 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:58 Download gff for BO16758.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 40..429 15..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:14 Download gff for BO16758.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 40..429 15..406 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:14 Download gff for BO16758.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19479429..19479753 80..406 98 <- Minus
X 19479814..19479878 15..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:58 Download gff for BO16758.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19373462..19373786 80..406 98 <- Minus
arm_X 19373847..19373911 15..79 100   Minus

BO16758.complete Sequence

418 bp assembled on 2006-10-11

GenBank Submission: FJ633901

> BO16758.complete
GAAGTTATCAGTCGACATGAATTCTCTGGCCAGGATCGGGGGTTTTGTGT
GCCAGTCCGTGCAAATAGCCGGCTGCGGGCTGCAGCAGGTGCGCACAAAG
TATGCCGATTGGAAGATGATTCGCGACGTAAAGCGGCGCAAGTGCGTCAA
GGAGAACGCCGTGGAGCGGCTGCGAGTCAACTCGCTGCGCAAGAACGACA
TCCTGCCGCCGGAGCTACGCGAGGTAGCCGACGCCGAGATCGCTGCTTTT
CCTCGGGACTCATCGCTCGTCCGGGTGAGGGAACGCTGCGCGCTTACGTC
ACGTCCGCGCGGAGTTGTCCACAAGTACAGGCTCAGTCGAATCGTGTGGC
GCCACCTCGCCGACTACAATAAGCTGTCCGGCGTCCAGCGCGCCATGTGG
GCAAGCTTTCTAGACCAT

BO16758.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-RB 387 CG32531-PB 1..384 17..400 1920 100 Plus
mRpS14-RA 387 CG32531-PA 1..384 17..400 1920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-RB 797 CG32531-RB 361..746 15..400 1930 100 Plus
mRpS14-RA 476 CG32531-RA 40..425 15..400 1930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19479433..19479754 400..79 1610 100 Minus
X 23542271 X 19479814..19479878 79..15 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:47:59 has no hits.

BO16758.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:03 Download gff for BO16758.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 1..387 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:21 Download gff for BO16758.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 1..387 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:19 Download gff for BO16758.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 42..425 17..402 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:04 Download gff for BO16758.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 1..387 17..401 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:07 Download gff for BO16758.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS14-RA 42..425 17..402 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:07 Download gff for BO16758.complete
Subject Subject Range Query Range Percent Splice Strand
X 19479429..19479753 80..402 99 <- Minus
X 19479814..19479876 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:19 Download gff for BO16758.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19373462..19373786 80..402 99 <- Minus
arm_X 19373847..19373909 17..79 100   Minus

BO16758.pep Sequence

Translation from 16 to 418

> BO16758.pep
MNSLARIGGFVCQSVQIAGCGLQQVRTKYADWKMIRDVKRRKCVKENAVE
RLRVNSLRKNDILPPELREVADAEIAAFPRDSSLVRVRERCALTSRPRGV
VHKYRLSRIVWRHLADYNKLSGVQRAMWASFLDH

BO16758.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS14-PB 128 CG32531-PB 1..128 1..128 663 100 Plus
mRpS14-PA 128 CG32531-PA 1..128 1..128 663 100 Plus