Clone Sequence Records
BO16759.3prime Sequence
581 bp (571 high quality bases) assembled on 2006-10-13
> BO16759.3prime
ATGGTCTAGAAAGCTTGCCTTGGCTTCTGGCTCTGAAGCAGAAGCTGCCG
GACCGGCCTCCTTATGACCGTTTCCATTCTGGAAGAGATCCGATGGACCC
ACATGCTTAATGGGTATGATGCGCTCCTTGAGCTCCTCCTTGGAAACTAA
TGGTGGAACCGTGATATTGAGAACTCCATCCTCCGACAAAGTGGAAACAA
TGGCATCCGAATCGAACTCCTTGGGCAGCGGATAGCGGCGAACAAAATGC
CGGGATACATGTCCATGATCGTCCTCGCGCTCCTCGTGTTTTCCCTCGAC
CACAATGCACTCGTTGACCAGTTTGACGGTCAGTTCACCTGGCTGAAAGA
GTCCCACATCCAGATGGACCTCGAAATTGCCCTGCTTATTTGAGGCTCCA
CCGCGGCTCAATGCAGCCAGCTCTCCGTTCCTTTTATTGGCCACCAGGTG
ATGGGCATGTGCACCCATCCGGGCAATCAGACCCAGGGTGTGCAAATCAA
GATCATGATGCTGCCGCGAATGCAATCGCCTGTACATGCGATTCGGGAAC
ATATCGTGGCCGTAGTACATGGAGTCCGGGG
BO16759.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4190-PA | 600 | Hsp67Bc-RA | 35..597 | 581..19 | 2815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp67Bc-RA | 987 | CG4190-RA | 215..777 | 581..19 | 2815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9371721..9372283 | 19..581 | 2815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:02:10 has no hits.
BO16759.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:51 Download gff for
BO16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4190-PA | 35..600 | 16..581 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:31 Download gff for
BO16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp67Bc-RA | 215..782 | 14..581 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:17:02 Download gff for
BO16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp67Bc-RA | 215..782 | 14..581 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:17:02 Download gff for
BO16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9371716..9372283 | 14..581 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:31 Download gff for
BO16759.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9364816..9365383 | 14..581 | 99 | | Plus |
BO16759.5prime Sequence
624 bp (595 high quality bases) assembled on 2006-10-13
> BO16759.5prime
GAAGTTATCCGTCGACATGCCAGATATTCCCTTTGTCTTGAATTTGGACT
CCCCGGACTCCATGTACTACGGCCACGATATGTTCCCGAATCGCATGTAC
AGGCGATTGCATTCGCGGCAGCATCATGATCTTGATTTGCACACCCTGGG
TCTGATTGCCCGGATGGGTGCACATGCCCATCACCTGGTGGCCAATAAAA
GGAACGGAGAGCTGGCTGCATTGAGCCGCGGTGGAGCCTCAAATAAGCAG
GGCAATTTCGAGGTCCATCTGGATGTGGGACTCTTTCAGCCAGGTGAACT
GACCGTCAAACTGGTCAACGAGTGCATTGTGGTCGAGGGAAAACACGAGG
AGCGCGAGGACGATCATGGACATGTATCCCGGCATTTTGTTCGCCGCTAT
CCGCTGCCCAAGGAGTTCGATTCGGATGCCATTGTTTCCACTTTGTCGGA
GGATGGAGTTCTCAATATCACGGTTCCACCATTAGTTTCCAAGGAGGAGC
TCAAGGAGCGCATCATACCCATTAAGCATGTGGGTCCATCGGATCTCTTC
CAGAATGGAAACGGTCATAAGGAGGCCGGTCCGGCAGCTTCTGCTTCAGA
GCCAGAAGCCAAAGCAAGCTTTCT
BO16759.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:31:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4190-PA | 600 | Hsp67Bc-RA | 1..596 | 17..612 | 2980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp67Bc-RA | 987 | CG4190-RA | 181..776 | 17..612 | 2980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:15:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9371722..9372317 | 612..17 | 2980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:15:38 has no hits.
BO16759.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:53 Download gff for
BO16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4190-PA | 1..600 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:01:27 Download gff for
BO16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp67Bc-RA | 176..782 | 11..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:26:05 Download gff for
BO16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp67Bc-RA | 176..782 | 11..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:26:05 Download gff for
BO16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9371716..9372322 | 11..618 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:01:27 Download gff for
BO16759.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9364816..9365422 | 11..618 | 99 | | Minus |
BO16759.complete Sequence
631 bp assembled on 2008-08-15
GenBank Submission: FJ633902
> BO16759.complete
GAAGTTATCCGTCGACATGCCAGATATTCCCTTTGTCTTGAATTTGGACT
CCCCGGACTCCATGTACTACGGCCACGATATGTTCCCGAATCGCATGTAC
AGGCGATTGCATTCGCGGCAGCATCATGATCTTGATTTGCACACCCTGGG
TCTGATTGCCCGGATGGGTGCACATGCCCATCACCTGGTGGCCAATAAAA
GGAACGGAGAGCTGGCTGCATTGAGCCGCGGTGGAGCCTCAAATAAGCAG
GGCAATTTCGAGGTCCATCTGGATGTGGGACTCTTTCAGCCAGGTGAACT
GACCGTCAAACTGGTCAACGAGTGCATTGTGGTCGAGGGAAAACACGAGG
AGCGCGAGGACGATCATGGACATGTATCCCGGCATTTTGTTCGCCGCTAT
CCGCTGCCCAAGGAGTTCGATTCGGATGCCATTGTTTCCACTTTGTCGGA
GGATGGAGTTCTCAATATCACGGTTCCACCATTAGTTTCCAAGGAGGAGC
TCAAGGAGCGCATCATACCCATTAAGCATGTGGGTCCATCGGATCTCTTC
CAGAATGGAAACGGTCATAAGGAGGCCGGTCCGGCAGCTTCTGCTTCAGA
GCCAGAAGCCAAGGCAAGCTTTCTAGACCAT
BO16759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp67Bc-RA | 600 | CG4190-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp67Bc-RA | 987 | CG4190-RA | 181..777 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9371721..9372317 | 613..17 | 2985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:10:08 has no hits.
BO16759.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:23 Download gff for
BO16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp67Bc-RA | 1..600 | 17..616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:57 Download gff for
BO16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp67Bc-RA | 181..777 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:12:05 Download gff for
BO16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp67Bc-RA | 1..597 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:22 Download gff for
BO16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp67Bc-RA | 181..777 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:22 Download gff for
BO16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9371718..9372317 | 17..615 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:57 Download gff for
BO16759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9364818..9365417 | 17..615 | 99 | | Minus |
BO16759.pep Sequence
Translation from 16 to 631
> BO16759.pep
MPDIPFVLNLDSPDSMYYGHDMFPNRMYRRLHSRQHHDLDLHTLGLIARM
GAHAHHLVANKRNGELAALSRGGASNKQGNFEVHLDVGLFQPGELTVKLV
NECIVVEGKHEEREDDHGHVSRHFVRRYPLPKEFDSDAIVSTLSEDGVLN
ITVPPLVSKEELKERIIPIKHVGPSDLFQNGNGHKEAGPAASASEPEAKA
SFLDH
BO16759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp67Bc-PA | 199 | CG4190-PA | 1..199 | 1..199 | 1055 | 100 | Plus |
| Hsp27-PB | 213 | CG4466-PB | 34..204 | 18..188 | 308 | 42.3 | Plus |
| Hsp27-PA | 213 | CG4466-PA | 34..204 | 18..188 | 308 | 42.3 | Plus |
| Hsp26-PB | 208 | CG4183-PB | 89..208 | 81..199 | 288 | 47.5 | Plus |
| Hsp26-PA | 208 | CG4183-PA | 89..208 | 81..199 | 288 | 47.5 | Plus |
