Clone Sequence Records
BO16760.3prime Sequence
227 bp (227 high quality bases) assembled on 2006-10-13
> BO16760.3prime
ATGGTCTAGAAAGCTTGCTTGCGATGGCTTGCGATATTTGCCGGACTTTC
TTCCGGTCTTCGGATGACATGAAGTGTACTGGCGCAGGGTTTCCAGGACG
ACGGTGGCCAGGAATCTCCACTGTGACTCCCGCAAGCGAAGGATCTGCTG
CTCCTTCTGCTCCGCCTCCCGCAACAGAGTCGCCTGATCGGGTATGTAGA
ATGCCACTGCCATGTCGACTGATAACT
BO16760.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4319-PA | 198 | rpr-RA | 1..195 | 213..19 | 975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 901 | CG4319-RA | 201..395 | 213..19 | 975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18398041..18398235 | 19..213 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:53:33 has no hits.
BO16760.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:53 Download gff for
BO16760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4319-PA | 1..198 | 16..213 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:22 Download gff for
BO16760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 196..403 | 11..221 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:05 Download gff for
BO16760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 196..403 | 11..221 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:05 Download gff for
BO16760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18398033..18398240 | 11..221 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:22 Download gff for
BO16760.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18391133..18391340 | 11..221 | 96 | | Plus |
BO16760.5prime Sequence
227 bp (227 high quality bases) assembled on 2006-10-13
> BO16760.5prime
GAAGTTATCCCTTGACATGGCAGTGGCATTCTACATACCCGATCAGGCGA
CTCTGTTGCGGGAGGCGGAGCAGAAGGAGCAGCAGATCCTTCGCTTGCGG
GAGTCACAGTGGAGATTCCTGGCCACCGTCGTCCTGGAAACCCTGCGCCA
GTACACTTCATGTCATCCGAAGACCGGAAGAAAGTCCGGCAAATATCGCA
AGCCATCGCAAGCAAGCTTTCTAGACC
BO16760.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4319-PA | 198 | rpr-RA | 1..195 | 17..211 | 975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 901 | CG4319-RA | 201..395 | 17..211 | 975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18398041..18398235 | 211..17 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:05:31 has no hits.
BO16760.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:54 Download gff for
BO16760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4319-PA | 1..198 | 17..214 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:02 Download gff for
BO16760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 195..403 | 10..219 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:24 Download gff for
BO16760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 195..403 | 10..219 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:24 Download gff for
BO16760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18398033..18398241 | 10..219 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:02 Download gff for
BO16760.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18391133..18391341 | 10..219 | 96 | | Minus |
BO16760.complete Sequence
229 bp assembled on 2006-10-11
GenBank Submission: FJ633903
> BO16760.complete
GAAGTTATCAGTCGACATGGCAGTGGCATTCTACATACCCGATCAGGCGA
CTCTGTTGCGGGAGGCGGAGCAGAAGGAGCAGCAGATCCTTCGCTTGCGG
GAGTCACAGTGGAGATTCCTGGCCACCGTCGTCCTGGAAACCCTGCGCCA
GTACACTTCATGTCATCCGAAGACCGGAAGAAAGTCCGGCAAATATCGCA
AGCCATCGCAAGCAAGCTTTCTAGACCAT
BO16760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 198 | CG4319-PA | 1..195 | 17..211 | 975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-RA | 901 | CG4319-RA | 201..395 | 17..211 | 975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18398041..18398235 | 211..17 | 975 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:11:28 has no hits.
BO16760.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:41 Download gff for
BO16760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 1..198 | 17..214 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:11 Download gff for
BO16760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 164..371 | 9..219 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:04:54 Download gff for
BO16760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 201..395 | 17..213 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:42 Download gff for
BO16760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 164..371 | 9..219 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:51 Download gff for
BO16760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rpr-RA | 201..395 | 17..213 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:51 Download gff for
BO16760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18398038..18398235 | 17..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:04:54 Download gff for
BO16760.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18391138..18391335 | 17..213 | 98 | | Minus |
BO16760.pep Sequence
Translation from 16 to 229
> BO16760.pep
MAVAFYIPDQATLLREAEQKEQQILRLRESQWRFLATVVLETLRQYTSCH
PKTGRKSGKYRKPSQASFLDH
BO16760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rpr-PA | 65 | CG4319-PA | 1..65 | 1..65 | 334 | 100 | Plus |
