Clone Sequence Records
BO16761.3prime Sequence
544 bp (474 high quality bases) assembled on 2006-10-13
> BO16761.3prime
ATGGTCTAGAAAGCTTGCGGCCTTTACTTCCTTTTCCTTTGCCGCTTGAA
GGTCCTGCAGGAACTTCTTTCCCTGCTGCAGACTCTCAAGATTTTGCTCC
CATCCAGGAGTTACTTTTGGGGCATTCTTAAGCCACCTCTCCACGTTGGG
GAACTTGCTTAGGTCAAACGAAAACCATTCTACGGTGGATACGGTGGCCA
GGATGACGATATCAGCCACGGTCAGTTGGCTACCGGCCACGAAGTCCTGA
CCCTCCAGGAAGGTGTTGAGGAATCCAAAGGCGGAGTTAACCTTGTCCAG
AGCTTCCTGATCTCCGAATTTGCCAGTGCGGAAGATTAGGAAGAAGTATT
TGGTCAGGGCGTCGTACAGGGTGCCCATATCGAAGTAAAGCCTCTGGTTG
ATCAAAGCCCGCTTCTGGGGATCGTTGGGATAGAGTGGGGAATCGGGTTT
GCCGTACTTCTCCACCAGATAGACGGCGATGGCACGCGACTCCCAAATGA
CAAATCCATTGTCCACCAGCGTGGGAATGGTGTGCTGTGGGTTA
BO16761.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4371-PA | 675 | GstD7-RA | 147..672 | 544..19 | 2605 | 99.8 | Minus |
| CG11512-PA | 648 | GstD4-RA | 145..233 | 537..449 | 320 | 94.3 | Minus |
| CG4181-PA | 648 | GstD2-RA | 187..233 | 495..449 | 185 | 95.7 | Minus |
| CG4181-PA | 648 | GstD2-RA | 142..179 | 540..503 | 165 | 97.3 | Minus |
| CG12242-PA | 651 | GstD5-RA | 187..233 | 495..449 | 160 | 93.6 | Minus |
| CG10045-PA | 630 | GstD1-RA | 148..182 | 537..503 | 150 | 97.1 | Minus |
| CG10045-PB | 630 | GstD1-RB | 148..182 | 537..503 | 150 | 97.1 | Minus |
| CG12242-PA | 651 | GstD5-RA | 146..179 | 536..503 | 145 | 97 | Minus |
| CG4423-PA | 648 | GstD6-RA | 275..317 | 404..362 | 140 | 93 | Minus |
| CG4421-PA | 639 | GstD8-RA | 247..313 | 432..366 | 135 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD7-RA | 756 | CG4371-RA | 193..718 | 544..19 | 2615 | 99.8 | Minus |
| GstD4-RA | 725 | CG11512-RA | 198..579 | 537..153 | 565 | 77.9 | Minus |
| GstD6-RA | 780 | CG4423-RA | 183..625 | 543..98 | 525 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12378692..12379217 | 544..19 | 2615 | 99.8 | Minus |
| 3R | 32079331 | 3R | 12374297..12374678 | 537..153 | 525 | 76.4 | Minus |
| 3R | 32079331 | 3R | 12372139..12372491 | 540..185 | 485 | 76.4 | Minus |
| 3R | 32079331 | 3R | 12377310..12377752 | 543..98 | 485 | 74.4 | Minus |
| 3R | 32079331 | 3R | 12375905..12376309 | 540..133 | 445 | 74.5 | Minus |
| 3R | 32079331 | 3R | 12380177..12380348 | 540..366 | 285 | 78.9 | Minus |
| 3R | 32079331 | 3R | 12368254..12368424 | 364..537 | 280 | 78.7 | Plus |
| 3R | 32079331 | 3R | 12373220..12373385 | 543..375 | 255 | 78.1 | Minus |
| 3R | 32079331 | 3R | 12365229..12365398 | 365..537 | 200 | 75.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:21:23 has no hits.
BO16761.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:55 Download gff for
BO16761.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4371-PA | 148..675 | 15..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:33:02 Download gff for
BO16761.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD7-RA | 155..691 | 7..543 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:38:48 Download gff for
BO16761.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD7-RA | 194..730 | 7..543 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:38:48 Download gff for
BO16761.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12378693..12379229 | 7..543 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:33:02 Download gff for
BO16761.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8204415..8204951 | 7..543 | 98 | | Minus |
BO16761.5prime Sequence
523 bp (411 high quality bases) assembled on 2006-10-13
> BO16761.5prime
GAAGTTATCCGTCGACATGCCGAACTTGGATCTCTACAATTTCCCCATGG
CGCCGGCCAGTCGCGCCATCCAGATGGTGGCCAAGGCTTTGGGTCTGGAG
CTGAACTCCAAGTTGATCAACACGATGGAGGGTGACCAACTGAAGCCAGA
GTTCGTGAGGATTAACCCACAGCACACCATTCCCACGCTGGTGGACAATG
GATTTGTCATCTGGGAGTCGCGTGCCATCGCCGTCTATCTGGTGGAGAAG
TACGGCAAACCCGATTCCCCACTCTATCCCAACGATCCCCAGAAGCGGGC
TTTGATCAACCAGAGGCTTTACTTCGATATGGGCACCCTGTACGACGCCC
TGACCAAATACTTCTTCCTAATCTTCCGCACTGGCAAATTCGGAGATCAG
GAAGCTCTGGACAAGGTTAACTCCGCCTTTGGATTCCTCAACACCTTCCT
GGAGGGTCAGGACTTCGTGGCCGGTAGCCAACTGACCGTGGCTGATATCG
TCATCCTGGCCACCGTATCCACC
BO16761.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4371-PA | 675 | GstD7-RA | 1..507 | 17..523 | 2535 | 100 | Plus |
| CG11512-PA | 648 | GstD4-RA | 145..233 | 170..258 | 295 | 93.2 | Plus |
| CG4181-PA | 648 | GstD2-RA | 183..233 | 208..258 | 205 | 96 | Plus |
| CG12242-PA | 651 | GstD5-RA | 183..233 | 208..258 | 180 | 94.1 | Plus |
| CG4181-PA | 648 | GstD2-RA | 142..179 | 167..204 | 165 | 97.3 | Plus |
| CG10045-PA | 630 | GstD1-RA | 148..182 | 170..204 | 150 | 97.1 | Plus |
| CG10045-PB | 630 | GstD1-RB | 148..182 | 170..204 | 150 | 97.1 | Plus |
| CG12242-PA | 651 | GstD5-RA | 146..179 | 171..204 | 145 | 97 | Plus |
| CG4423-PA | 648 | GstD6-RA | 275..317 | 303..345 | 140 | 93 | Plus |
| CG4421-PA | 639 | GstD8-RA | 247..313 | 275..341 | 135 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD7-RA | 756 | CG4371-RA | 47..553 | 17..523 | 2535 | 100 | Plus |
| GstD2-RA | 734 | CG4181-RA | 76..521 | 74..522 | 705 | 78.2 | Plus |
| GstD5-RA | 840 | CG12242-RA | 80..525 | 74..522 | 555 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12378546..12379052 | 17..523 | 2535 | 100 | Plus |
| 3R | 32079331 | 3R | 12372046..12372491 | 74..522 | 665 | 77.1 | Plus |
| 3R | 32079331 | 3R | 12375812..12376257 | 74..522 | 530 | 75.1 | Plus |
| 3R | 32079331 | 3R | 12374270..12374646 | 143..522 | 515 | 76.3 | Plus |
| 3R | 32079331 | 3R | 12377276..12377665 | 130..522 | 460 | 75.1 | Plus |
| 3R | 32079331 | 3R | 12380135..12380348 | 125..341 | 375 | 79.3 | Plus |
| 3R | 32079331 | 3R | 12368254..12368514 | 343..80 | 370 | 76.9 | Minus |
| 3R | 32079331 | 3R | 12373129..12373385 | 73..332 | 290 | 75 | Plus |
| 3R | 32079331 | 3R | 12365229..12365398 | 342..170 | 200 | 75.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:07:08 has no hits.
BO16761.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:55 Download gff for
BO16761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4371-PA | 1..507 | 17..523 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:10:46 Download gff for
BO16761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD7-RA | 2..514 | 11..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:51:29 Download gff for
BO16761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD7-RA | 35..553 | 4..523 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:51:29 Download gff for
BO16761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12378534..12379052 | 4..523 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:10:46 Download gff for
BO16761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8204256..8204774 | 4..523 | 99 | | Plus |
BO16761.complete Sequence
706 bp assembled on 2008-08-15
GenBank Submission: FJ633904
> BO16761.complete
GAAGTTATCCGTCGACATGCCGAACTTGGATCTCTACAATTTCCCCATGG
CGCCGGCCAGTCGCGCCATCCAGATGGTGGCCAAGGCTTTGGGTCTGGAG
CTGAACTCCAAGTTGATCAACACGATGGAGGGTGACCAACTGAAGCCAGA
GTTCGTGAGGATTAACCCACAGCACACCATTCCCACGCTGGTGGACAATG
GATTTGTCATCTGGGAGTCGCGTGCCATCGCCGTCTATCTGGTGGAGAAG
TACGGCAAACCCGATTCCCCACTCTATCCCAACGATCCCCAGAAGCGGGC
TTTGATCAACCAGAGGCTTTACTTCGATATGGGCACCCTGTACGACGCCC
TGACCAAATACTTCTTCCTAATCTTCCGCACTGGCAAATTCGGAGATCAG
GAAGCTCTGGACAAGGTTAACTCCGCCTTTGGATTCCTCAACACCTTCCT
GGAGGGTCAGGACTTCGTGGCCGGTAGCCAACTGACCGTGGCTGATATCG
TCATCCTGGCCACCGTATCCACCGTAGAATGGTTTTCGTTTGACCTAAGC
AAGTTCCCCAACGTGGAGAGGTGGCTTAAGAATGCCCCAAAAGTAACTCC
TGGATGGGAGCAAAATCTTGAGAGTCTGCAGCAGGGAAAGAAGTTCCTGC
AGGACCTTCAAGCGGCAAAGGAAAAGGAAGTAAAGGCCGCAAGCTTTCTA
GACCAT
BO16761.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD7-RA | 675 | CG4371-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
| GstD2-RA | 648 | CG4181-PA | 49..494 | 74..522 | 665 | 77.1 | Plus |
| GstD5-RA | 651 | CG12242-PA | 49..546 | 74..574 | 535 | 74.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD7-RA | 756 | CG4371-RA | 47..718 | 17..688 | 3360 | 100 | Plus |
| GstD2-RA | 734 | CG4181-RA | 76..521 | 74..522 | 665 | 77.1 | Plus |
| GstD5-RA | 840 | CG12242-RA | 80..577 | 74..574 | 535 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12378546..12379217 | 17..688 | 3360 | 100 | Plus |
| 3R | 32079331 | 3R | 12372046..12372491 | 74..522 | 665 | 77.1 | Plus |
| 3R | 32079331 | 3R | 12375812..12376309 | 74..574 | 535 | 74.3 | Plus |
| 3R | 32079331 | 3R | 12374270..12374678 | 143..554 | 525 | 75.7 | Plus |
| 3R | 32079331 | 3R | 12377276..12377752 | 130..609 | 505 | 74.2 | Plus |
| 3R | 32079331 | 3R | 12380135..12380348 | 125..341 | 375 | 79.3 | Plus |
| 3R | 32079331 | 3R | 12368254..12368514 | 343..80 | 370 | 76.9 | Minus |
| 3R | 32079331 | 3R | 12373129..12373385 | 73..332 | 290 | 75 | Plus |
| 3R | 32079331 | 3R | 12365229..12365398 | 342..170 | 200 | 75.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:58:16 has no hits.
BO16761.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:03 Download gff for
BO16761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD7-RA | 1..675 | 17..692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:24 Download gff for
BO16761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD7-RA | 8..679 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:00 Download gff for
BO16761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD7-RA | 1..672 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:23 Download gff for
BO16761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD7-RA | 47..718 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:23 Download gff for
BO16761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12378546..12379217 | 17..690 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:24 Download gff for
BO16761.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8204268..8204939 | 17..690 | 99 | | Plus |
BO16761.pep Sequence
Translation from 16 to 706
> BO16761.pep
MPNLDLYNFPMAPASRAIQMVAKALGLELNSKLINTMEGDQLKPEFVRIN
PQHTIPTLVDNGFVIWESRAIAVYLVEKYGKPDSPLYPNDPQKRALINQR
LYFDMGTLYDALTKYFFLIFRTGKFGDQEALDKVNSAFGFLNTFLEGQDF
VAGSQLTVADIVILATVSTVEWFSFDLSKFPNVERWLKNAPKVTPGWEQN
LESLQQGKKFLQDLQAAKEKEVKAASFLDH
BO16761.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD7-PA | 224 | CG4371-PA | 1..224 | 1..224 | 1162 | 100 | Plus |
| GstD6-PA | 215 | CG4423-PA | 1..209 | 4..213 | 760 | 68.6 | Plus |
| GstD2-PA | 215 | CG4181-PA | 1..204 | 4..208 | 729 | 68.3 | Plus |
| GstD4-PA | 215 | CG11512-PA | 1..213 | 4..217 | 714 | 64.5 | Plus |
| GstD5-PA | 216 | CG12242-PA | 1..216 | 4..220 | 711 | 62.7 | Plus |
