Clone BO16764 Report

Search the DGRC for BO16764

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:64
Vector:pDNR-Dual
Associated Gene/Transcriptwbl-RA
Protein status:BO16764.pep: Imported from assembly
Sequenced Size:805

Clone Sequence Records

BO16764.3prime Sequence

710 bp (668 high quality bases) assembled on 2006-10-13

> BO16764.3prime
ATGGTCTAGAAAGCTTGCCAGTTCCTCCTTTTCCGGCGCTGTCTTGGTGA
CCTTGTGAACCCTGAAGACTTCCAGGATGTTCAGTTTCCTCAGCAGCTCC
TCCTTCTTGGCCTCGGTGACCTTGCCGGCCTTGAGGCGCAGGAGTCGCTT
GGTCTCCTCCTCCAGGAAATCGTAGCCCACCTCGTGGATCTTCCGCATGT
AGATCAGATAGGCCCTGGCGTTCTGCTGCTGCTCGGGATCGGTCAGCTGC
TCCTGCTTGGCCTGCAGCTTTTCGATAAGCTTCAGTTGCTCTGCATCGGG
GATATTGGCATAGTTCTTGAGCACTTCGTTGAACTCTTTGATGCAGCCAT
CACGACCGATGTACAGAGGTGTGTTGGCACTGACAAAAGCCTTCAGATTG
TCCAGCGTTACGTCGACGTGGCTAGGAAGCTGGACGTACTCATCAGCGTT
GCCCTTGAACAGGAAGATACTCGGGAAGTTCTTGTCGTCGACTTTGTAAC
GGTCGCCCAGGGCCTTGTTCTCCAGTTCTCCATAGTCCTTGACACCCACG
GTGGCTATTAGCAGATCTTTAGTTGCCTTGTGGGCAGATTTGGAGAAGGC
GGTAAAGGCCTCATGCTTTTCCCCATACGGATATGCGATATCAAATTTCA
CTACGGAGTAGGGAAATCGTTCCACCGTCTTCTCGAAACTCAGCTCATCC
AGATCCACGC

BO16764.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7225-PA 774 wbl-RA 80..771 710..19 3460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-RB 1319 CG7225-RB 510..1201 710..19 3460 100 Minus
wbl-RA 953 CG7225-RA 144..835 710..19 3460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19250303..19250799 515..19 2485 100 Minus
2R 25286936 2R 19249904..19250101 710..513 990 100 Minus
Blast to na_te.dros performed 2015-02-08 11:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2754..2867 321..209 151 65.8 Minus

BO16764.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:55:59 Download gff for BO16764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7225-PA 80..774 16..710 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:33:07 Download gff for BO16764.3prime
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 144..848 5..710 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:38:54 Download gff for BO16764.3prime
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 144..848 5..710 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:38:54 Download gff for BO16764.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19249904..19250100 514..710 100 -> Minus
2R 19250305..19250812 5..513 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:33:07 Download gff for BO16764.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15137409..15137605 514..710 100 -> Minus
arm_2R 15137810..15138317 5..513 99   Minus

BO16764.5prime Sequence

650 bp (624 high quality bases) assembled on 2006-10-13

> BO16764.5prime
GAAGTTATCACTCGACATGATGCATATTTTGGTGACTCTGCTCCTGGTCG
CTATCCACTCGATACCCACCACCTGGGCCGTCACCTGCACGGGCTGCGTG
GATCTGGATGAGCTGAGTTTCGAGAAGACGGTGGAACGATTTCCCTACTC
CGTAGTGAAATTTGATATCGCATATCCGTATGGGGAAAAGCATGAGGCCT
TTACCGCCTTCTCCAAATCTGCCCACAAGGCAACTAAAGATCTGCTAATA
GCCACCGTGGGTGTCAAGGACTATGGAGAACTGGAGAACAAGGCCCTGGG
CGACCGTTACAAAGTCGACGACAAGAACTTCCCGAGTATCTTCCTGTTCA
AGGGCAACGCTGATGAGTACGTCCAGCTTCCTAGCCACGTCGACGTAACG
CTGGACAATCTGAAGGCTTTTGTCAGTGCCAACACACCTCTGTACATCGG
TCGTGATGGCTGCATCAAAGAGTTCAACGAAGTGCTCAAGAACTATGCCA
ATATCCCCGATGCAGAGCAACTGAAGCTTATCGAAAAGCTGCAGGCCAAG
CAGGAGCAGCTGACCGATCCCGAGCAGCAGCAGAACGCCAGGGCCTATCT
GATCTACATGCGGAAGATCCACGAGGTGGGCTACGATTTCCTGGAGGAGG

BO16764.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7225-PA 774 wbl-RA 1..634 17..650 3170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-RB 1319 CG7225-RB 431..1064 17..650 3170 100 Plus
wbl-RA 953 CG7225-RA 65..698 17..650 3170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19250303..19250662 291..650 1800 100 Plus
2R 25286936 2R 19249825..19250101 17..293 1385 100 Plus
Blast to na_te.dros performed 2015-02-10 23:16:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2754..2867 485..597 151 65.8 Plus

BO16764.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:01 Download gff for BO16764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7225-PA 1..634 17..650 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:01:36 Download gff for BO16764.5prime
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 65..698 17..650 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:29:05 Download gff for BO16764.5prime
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 65..698 17..650 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:29:05 Download gff for BO16764.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19249825..19250100 17..292 100 -> Plus
2R 19250305..19250662 293..650 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:01:36 Download gff for BO16764.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15137330..15137605 17..292 100 -> Plus
arm_2R 15137810..15138167 293..650 100   Plus

BO16764.complete Sequence

805 bp assembled on 2008-08-15

GenBank Submission: FJ633905

> BO16764.complete
GAAGTTATCACTCGACATGATGCATATTTTGGTGACTCTGCTCCTGGTCG
CTATCCACTCGATACCCACCACCTGGGCCGTCACCTGCACGGGCTGCGTG
GATCTGGATGAGCTGAGTTTCGAGAAGACGGTGGAACGATTTCCCTACTC
CGTAGTGAAATTTGATATCGCATATCCGTATGGGGAAAAGCATGAGGCCT
TTACCGCCTTCTCCAAATCTGCCCACAAGGCAACTAAAGATCTGCTAATA
GCCACCGTGGGTGTCAAGGACTATGGAGAACTGGAGAACAAGGCCCTGGG
CGACCGTTACAAAGTCGACGACAAGAACTTCCCGAGTATCTTCCTGTTCA
AGGGCAACGCTGATGAGTACGTCCAGCTTCCTAGCCACGTCGACGTAACG
CTGGACAATCTGAAGGCTTTTGTCAGTGCCAACACACCTCTGTACATCGG
TCGTGATGGCTGCATCAAAGAGTTCAACGAAGTGCTCAAGAACTATGCCA
ATATCCCCGATGCAGAGCAACTGAAGCTTATCGAAAAGCTGCAGGCCAAG
CAGGAGCAGCTGACCGATCCCGAGCAGCAGCAGAACGCCAGGGCCTATCT
GATCTACATGCGGAAGATCCACGAGGTGGGCTACGATTTCCTGGAGGAGG
AGACCAAGCGACTCCTGCGCCTCAAGGCCGGCAAGGTCACCGAGGCCAAG
AAGGAGGAGCTGCTGAGGAAACTGAACATCCTGGAAGTCTTCAGGGTTCA
CAAGGTCACCAAGACAGCGCCGGAAAAGGAGGAACTGGCAAGCTTTCTAG
ACCAT

BO16764.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-RB 774 CG7225-PB 1..771 17..787 3855 100 Plus
wbl-RA 774 CG7225-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-RB 1319 CG7225-RB 431..1201 17..787 3855 100 Plus
wbl-RA 953 CG7225-RA 65..835 17..787 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19250303..19250799 291..787 2485 100 Plus
2R 25286936 2R 19249825..19250101 17..293 1385 100 Plus
Blast to na_te.dros performed 2014-11-27 06:50:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2754..2867 485..597 151 65.8 Plus

BO16764.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:44:36 Download gff for BO16764.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 65..848 17..801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:57 Download gff for BO16764.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 65..835 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:22 Download gff for BO16764.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 65..835 17..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:42 Download gff for BO16764.complete
Subject Subject Range Query Range Percent Splice Strand
wbl-RA 65..835 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:42 Download gff for BO16764.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19249825..19250100 17..292 100 -> Plus
2R 19250305..19250799 293..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:57 Download gff for BO16764.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15137330..15137605 17..292 100 -> Plus
arm_2R 15137810..15138304 293..789 99   Plus

BO16764.pep Sequence

Translation from 16 to 805

> BO16764.pep
MMHILVTLLLVAIHSIPTTWAVTCTGCVDLDELSFEKTVERFPYSVVKFD
IAYPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKV
DDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLYIGRDGCI
KEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRK
IHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKT
APEKEELASFLDH

BO16764.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
wbl-PB 257 CG7225-PB 1..257 1..257 1320 100 Plus
wbl-PA 257 CG7225-PA 1..257 1..257 1320 100 Plus