Clone BO16765 Report

Search the DGRC for BO16765

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptSsb-c31a-RA
Protein status:BO16765.pep: validated full length
Sequenced Size:364

Clone Sequence Records

BO16765.3prime Sequence

362 bp (362 high quality bases) assembled on 2006-10-13

> BO16765.3prime
ATGGTCTAGAAAGCTTGCATTCTCGATCGCGCGGGTGACTTCTTCGGCCA
CTTCAAGGAGTTTCTTCCATTGAATTAAAGATAGGGAGATGCCCTTCTTG
CCGGGAAGAATTTGGCCGCCCTTATCGTAGAACTCTCGAATGTCCACCGA
TTTGCGACCGCGGAACTCGTTGATTCGCACCTGGCGAAGTCCTTCCAGGG
TCCAAGATGTAGCACCATTTTCGCCCGAATCTTTTGGATCTGAATTTGGA
GCATCAGATTCCTTCGCCTTCTTGCTTGCCGGCTTGATACGATCATCTGG
ACCGCTATCGCTATCTGAGGACGAATCCTTCTTCTTTGTTTTGGGCATGT
CGACTGATAACT

BO16765.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8396-PA 333 Ssb-c31a-RA 1..330 348..19 1650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-RA 536 CG8396-RA 100..429 348..19 1650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8211559..8211831 291..19 1365 100 Minus
2L 23513712 2L 8211446..8211502 348..292 285 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:16:17 has no hits.

BO16765.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:01 Download gff for BO16765.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8396-PA 1..333 15..348 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:46 Download gff for BO16765.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..434 11..348 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:04 Download gff for BO16765.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..434 11..348 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:04 Download gff for BO16765.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8211446..8211502 292..348 100 -> Minus
2L 8211559..8211836 11..291 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:46 Download gff for BO16765.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8211446..8211502 292..348 100 -> Minus
arm_2L 8211559..8211836 11..291 98   Minus

BO16765.5prime Sequence

362 bp (362 high quality bases) assembled on 2006-10-13

> BO16765.5prime
GAAGTTATCAGTCGACATGCCCAAAACAAAGAAGAAGGATTCGTCCTCAG
ATAGCGATAGCGGTCCAGATGATCGTATCAAGCCGGCAAGCAAGAAGGCG
AAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGG
TGCTACATCTTGGACCCTGGAAGGACTTCGCCAGGTGCGAATCAACGAGT
TCCGCGGTCGCAAATCGGTGGACATTCGAGAGTTCTACGATAAGGGCGGC
CAAATTCTTCCCGGCAAGAAGGGCATCTCCCTATCTTTAATTCAATGGAA
GAAACTCCTTGAAGTGGCCGAAGAAGTCACCCGCGCGATCGAGAATGCAA
GCTTTCTAGACC

BO16765.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG8396-PA 333 Ssb-c31a-RA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-RA 536 CG8396-RA 100..429 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8211559..8211831 74..346 1365 100 Plus
2L 23513712 2L 8211446..8211502 17..73 285 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:52:09 has no hits.

BO16765.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:02 Download gff for BO16765.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8396-PA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:05 Download gff for BO16765.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..434 17..354 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:55 Download gff for BO16765.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..434 17..354 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:55 Download gff for BO16765.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8211446..8211502 17..73 100 -> Plus
2L 8211559..8211836 74..354 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:05 Download gff for BO16765.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8211446..8211502 17..73 100 -> Plus
arm_2L 8211559..8211836 74..354 98   Plus

BO16765.complete Sequence

364 bp assembled on 2006-10-11

GenBank Submission: FJ633906

> BO16765.complete
GAAGTTATCAGTCGACATGCCCAAAACAAAGAAGAAGGATTCGTCCTCAG
ATAGCGATAGCGGTCCAGATGATCGTATCAAGCCGGCAAGCAAGAAGGCG
AAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGG
TGCTACATCTTGGACCCTGGAAGGACTTCGCCAGGTGCGAATCAACGAGT
TCCGCGGTCGCAAATCGGTGGACATTCGAGAGTTCTACGATAAGGGCGGC
CAAATTCTTCCCGGCAAGAAGGGCATCTCCCTATCTTTAATTCAATGGAA
GAAACTCCTTGAAGTGGCCGAAGAAGTCACCCGCGCGATCGAGAATGCAA
GCTTTCTAGACCAT

BO16765.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-RA 333 CG8396-PA 1..330 17..346 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-RA 536 CG8396-RA 100..429 17..346 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8211559..8211831 74..346 1365 100 Plus
2L 23513712 2L 8211446..8211502 17..73 285 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:27:34 has no hits.

BO16765.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:45 Download gff for BO16765.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 1..333 17..350 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:48 Download gff for BO16765.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 84..418 17..354 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:17 Download gff for BO16765.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..429 17..348 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:45 Download gff for BO16765.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 84..418 17..354 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:59 Download gff for BO16765.complete
Subject Subject Range Query Range Percent Splice Strand
Ssb-c31a-RA 100..429 17..348 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:59 Download gff for BO16765.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8211446..8211502 17..73 100 -> Plus
2L 8211559..8211831 74..348 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:17 Download gff for BO16765.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8211446..8211502 17..73 100 -> Plus
arm_2L 8211559..8211831 74..348 99   Plus

BO16765.pep Sequence

Translation from 16 to 364

> BO16765.pep
MPKTKKKDSSSDSDSGPDDRIKPASKKAKESDAPNSDPKDSGENGATSWT
LEGLRQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKLLEV
AEEVTRAIENASFLDH

BO16765.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Ssb-c31a-PA 110 CG8396-PA 1..110 1..110 564 100 Plus