Clone Sequence Records
BO16765.3prime Sequence
362 bp (362 high quality bases) assembled on 2006-10-13
> BO16765.3prime
ATGGTCTAGAAAGCTTGCATTCTCGATCGCGCGGGTGACTTCTTCGGCCA
CTTCAAGGAGTTTCTTCCATTGAATTAAAGATAGGGAGATGCCCTTCTTG
CCGGGAAGAATTTGGCCGCCCTTATCGTAGAACTCTCGAATGTCCACCGA
TTTGCGACCGCGGAACTCGTTGATTCGCACCTGGCGAAGTCCTTCCAGGG
TCCAAGATGTAGCACCATTTTCGCCCGAATCTTTTGGATCTGAATTTGGA
GCATCAGATTCCTTCGCCTTCTTGCTTGCCGGCTTGATACGATCATCTGG
ACCGCTATCGCTATCTGAGGACGAATCCTTCTTCTTTGTTTTGGGCATGT
CGACTGATAACT
BO16765.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8396-PA | 333 | Ssb-c31a-RA | 1..330 | 348..19 | 1650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-RA | 536 | CG8396-RA | 100..429 | 348..19 | 1650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8211559..8211831 | 291..19 | 1365 | 100 | Minus |
2L | 23513712 | 2L | 8211446..8211502 | 348..292 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:16:17 has no hits.
BO16765.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:01 Download gff for
BO16765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8396-PA | 1..333 | 15..348 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:46 Download gff for
BO16765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..434 | 11..348 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:04 Download gff for
BO16765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..434 | 11..348 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:04 Download gff for
BO16765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8211446..8211502 | 292..348 | 100 | -> | Minus |
2L | 8211559..8211836 | 11..291 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:46 Download gff for
BO16765.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8211446..8211502 | 292..348 | 100 | -> | Minus |
arm_2L | 8211559..8211836 | 11..291 | 98 | | Minus |
BO16765.5prime Sequence
362 bp (362 high quality bases) assembled on 2006-10-13
> BO16765.5prime
GAAGTTATCAGTCGACATGCCCAAAACAAAGAAGAAGGATTCGTCCTCAG
ATAGCGATAGCGGTCCAGATGATCGTATCAAGCCGGCAAGCAAGAAGGCG
AAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGG
TGCTACATCTTGGACCCTGGAAGGACTTCGCCAGGTGCGAATCAACGAGT
TCCGCGGTCGCAAATCGGTGGACATTCGAGAGTTCTACGATAAGGGCGGC
CAAATTCTTCCCGGCAAGAAGGGCATCTCCCTATCTTTAATTCAATGGAA
GAAACTCCTTGAAGTGGCCGAAGAAGTCACCCGCGCGATCGAGAATGCAA
GCTTTCTAGACC
BO16765.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8396-PA | 333 | Ssb-c31a-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-RA | 536 | CG8396-RA | 100..429 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8211559..8211831 | 74..346 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 8211446..8211502 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:52:09 has no hits.
BO16765.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:02 Download gff for
BO16765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8396-PA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:05 Download gff for
BO16765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..434 | 17..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:55 Download gff for
BO16765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..434 | 17..354 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:55 Download gff for
BO16765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8211446..8211502 | 17..73 | 100 | -> | Plus |
2L | 8211559..8211836 | 74..354 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:05 Download gff for
BO16765.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8211446..8211502 | 17..73 | 100 | -> | Plus |
arm_2L | 8211559..8211836 | 74..354 | 98 | | Plus |
BO16765.complete Sequence
364 bp assembled on 2006-10-11
GenBank Submission: FJ633906
> BO16765.complete
GAAGTTATCAGTCGACATGCCCAAAACAAAGAAGAAGGATTCGTCCTCAG
ATAGCGATAGCGGTCCAGATGATCGTATCAAGCCGGCAAGCAAGAAGGCG
AAGGAATCTGATGCTCCAAATTCAGATCCAAAAGATTCGGGCGAAAATGG
TGCTACATCTTGGACCCTGGAAGGACTTCGCCAGGTGCGAATCAACGAGT
TCCGCGGTCGCAAATCGGTGGACATTCGAGAGTTCTACGATAAGGGCGGC
CAAATTCTTCCCGGCAAGAAGGGCATCTCCCTATCTTTAATTCAATGGAA
GAAACTCCTTGAAGTGGCCGAAGAAGTCACCCGCGCGATCGAGAATGCAA
GCTTTCTAGACCAT
BO16765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-RA | 333 | CG8396-PA | 1..330 | 17..346 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-RA | 536 | CG8396-RA | 100..429 | 17..346 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8211559..8211831 | 74..346 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 8211446..8211502 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:27:34 has no hits.
BO16765.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:45 Download gff for
BO16765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 1..333 | 17..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:48 Download gff for
BO16765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 84..418 | 17..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:17 Download gff for
BO16765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..429 | 17..348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:45 Download gff for
BO16765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 84..418 | 17..354 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:59 Download gff for
BO16765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssb-c31a-RA | 100..429 | 17..348 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:59 Download gff for
BO16765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8211446..8211502 | 17..73 | 100 | -> | Plus |
2L | 8211559..8211831 | 74..348 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:17 Download gff for
BO16765.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8211446..8211502 | 17..73 | 100 | -> | Plus |
arm_2L | 8211559..8211831 | 74..348 | 99 | | Plus |
BO16765.pep Sequence
Translation from 16 to 364
> BO16765.pep
MPKTKKKDSSSDSDSGPDDRIKPASKKAKESDAPNSDPKDSGENGATSWT
LEGLRQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKLLEV
AEEVTRAIENASFLDH
BO16765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssb-c31a-PA | 110 | CG8396-PA | 1..110 | 1..110 | 564 | 100 | Plus |