Clone BO16766 Report

Search the DGRC for BO16766

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptLip3-RA
Protein status:BO16766.pep: Imported from assembly
Sequenced Size:1216

Clone Sequence Records

BO16766.3prime Sequence

549 bp (531 high quality bases) assembled on 2006-10-13

> BO16766.3prime
ATGGTCTAGAAAGCTTGCTTCGTAGGATTGCATCTGCTTCAAGACCTCGT
CGTAGACGTATTTTCTGGCCTCAGTGCCCCAAATGAAATCCAGATGGGCC
CACTTCTCGAACGGCACCAGGTAGTCCAGCGCCATGTTGGGCAGTTCGTC
TCTCAACTTGCGGACATCGCTCACATCGCACATCCAGTCATTGGCTCCGT
AGTACAATAGAACCGGGGCCTTGGCATTCTTTAGCTTGTAATCCGGAGGG
AAGTAGCTGCCGTACTCATAGGGATTACGGAGAGCGGTGTAGTCGAATTT
ACGGAACTTTCCAGAGTTATATTCCTGACAAAAGTGCAAGTTCTGGTTCA
CCGATGCGCCAGCCGGAGACGTGGCCTTGATGTGCTCAAGGAGTTCGTAG
TCCAGCTGTTCGGTATCATAGCCTCCAATCAGGAAGATCTCGTTGGCGCA
CATGTCGGCATAAGGAGAAGTGGCCTGGCACATCTCTATGCCCAAATCCT
GCTTGAACTTATTGCTGGGCATGAACTCCATGGATCCGCAGACCTCCAC

BO16766.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8823-PA 1185 Lip3-RA 652..1182 549..19 2655 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1434 CG8823-RA 810..1340 549..19 2655 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13370334..13370711 19..396 1890 100 Plus
3R 32079331 3R 13370788..13370941 396..549 770 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:32:48 has no hits.

BO16766.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:03 Download gff for BO16766.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8823-PA 652..1185 18..549 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:36:22 Download gff for BO16766.3prime
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 810..1347 10..549 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:25 Download gff for BO16766.3prime
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 810..1347 10..549 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:25 Download gff for BO16766.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13370327..13370711 10..396 98 <- Plus
3R 13370789..13370941 397..549 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:36:22 Download gff for BO16766.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9196049..9196433 10..396 98 <- Plus
arm_3R 9196511..9196663 397..549 100   Plus

BO16766.5prime Sequence

552 bp (500 high quality bases) assembled on 2006-10-13

> BO16766.5prime
GAAGTTATCCGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTAC
TGGTCGGATTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGC
GGTGAGCGCATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGT
CACCAGTGACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCA
AAACGGGTGAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATG
CTGAGTTCTTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGC
CTATATGCTGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAG
GCAACACCTACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATC
TTCTGGAACTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGAT
GATTGATTATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGG
GCCACTCCCAGGGTACCCCTGTCTATCTGGTGATGGTGTCGGAGAGACCC
GA

BO16766.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8823-PA 1185 Lip3-RA 1..536 17..552 2655 99.8 Plus
CG8093-PA 1197 CG8093-RA 313..359 320..366 185 95.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1434 CG8823-RA 159..694 17..552 2665 99.8 Plus
CG8093-RB 1555 CG8093-RB 311..445 232..366 240 78.5 Plus
CG8093-RA 1334 CG8093-RA 311..445 232..366 240 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13371057..13371508 552..101 2245 99.8 Minus
3R 32079331 3R 13371662..13371746 101..17 425 100 Minus
2R 25286936 2R 15215170..15215304 366..232 240 78.5 Minus
3L 28110227 3L 20460995..20461065 293..363 220 87.3 Plus
Blast to na_te.dros performed on 2015-02-02 17:14:31 has no hits.

BO16766.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:04 Download gff for BO16766.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8823-PA 1..535 17..551 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:36:21 Download gff for BO16766.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 157..693 13..551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:09 Download gff for BO16766.5prime
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 157..693 13..551 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:09 Download gff for BO16766.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13371663..13371748 13..100 97   Minus
3R 13371058..13371508 101..551 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:36:21 Download gff for BO16766.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9196780..9197230 101..551 99 <- Minus
arm_3R 9197385..9197470 13..100 97   Minus

BO16766.complete Sequence

1216 bp assembled on 2008-08-15

GenBank Submission: FJ633907

> BO16766.complete
GAAGTTATCCGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTAC
TGGTCGGATTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGC
GGTGAGCGCATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGT
CACCAGTGACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCA
AAACGGGTGAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATG
CTGAGTTCTTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGC
CTATATGCTGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAG
GCAACACCTACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATC
TTCTGGAACTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGAT
GATTGATTATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGG
GCCACTCCCAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCC
GAGTACAATGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTA
TATGGGCAACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGG
GCCAGCCCAATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCC
AGCAATAAGTTCAAGCAGGATTTGGGCATAGAGATGTGCCAGGCCACTTC
TCCTTATGCCGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATG
ATACCGAACAGCTGGACTACGAACTCCTTGAGCACATCAAGGCCACGTCT
CCGGCTGGCGCATCGGTGAACCAGAACTTGCACTTTTGTCAGGAATATAA
CTCTGGAAAGTTCCGTAAATTCGACTACACCGCTCTCCGTAATCCCTATG
AGTACGGCAGCTACTTCCCTCCGGATTACAAGCTAAAGAATGCCAAGGCC
CCGGTTCTATTGTACTACGGAGCCAATGACTGGATGTGCGATGTGAGCGA
TGTCCGCAAGTTGAGAGACGAACTGCCCAACATGGCGCTGGACTACCTGG
TGCCGTTCGAGAAGTGGGCCCATCTGGATTTCATTTGGGGCACTGAGGCC
AGAAAATACGTCTACGACGAGGTCTTGAAGCAGATGCAATCCTACGAAGC
AAGCTTTCTAGACCAT

BO16766.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:08
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1185 CG8823-PA 1..1182 17..1198 5910 100 Plus
CG8093-RB 1197 CG8093-PB 225..359 232..366 240 78.5 Plus
CG8093-RA 1197 CG8093-PA 225..359 232..366 240 78.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-RA 1434 CG8823-RA 159..1340 17..1198 5910 100 Plus
CG8093-RB 1555 CG8093-RB 311..445 232..366 240 78.5 Plus
CG8093-RA 1334 CG8093-RA 311..445 232..366 240 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13370788..13371508 821..101 3605 100 Minus
3R 32079331 3R 13370334..13370711 1198..821 1890 100 Minus
3R 32079331 3R 13371662..13371746 101..17 425 100 Minus
2R 25286936 2R 15215170..15215304 366..232 240 78.5 Minus
3L 28110227 3L 20460995..20461065 293..363 220 87.3 Plus
2L 23513712 2L 22182891..22183009 245..363 220 79 Plus
Blast to na_te.dros performed on 2014-11-27 13:56:07 has no hits.

BO16766.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:28 Download gff for BO16766.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 157..1347 13..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:04 Download gff for BO16766.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 159..1340 17..1200 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:01 Download gff for BO16766.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 159..1340 17..1200 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:26 Download gff for BO16766.complete
Subject Subject Range Query Range Percent Splice Strand
Lip3-RA 159..1340 17..1200 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:26 Download gff for BO16766.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13370332..13370711 821..1200 99 <- Minus
3R 13370789..13371508 101..820 100 <- Minus
3R 13371663..13371746 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:04 Download gff for BO16766.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9196054..9196433 821..1200 99 <- Minus
arm_3R 9196511..9197230 101..820 100 <- Minus
arm_3R 9197385..9197468 17..100 100   Minus

BO16766.pep Sequence

Translation from 16 to 1216

> BO16766.pep
MTRGALKVTILLVGLGLVLAGSRPISDCGERIEDDGYPMERHEVVTSDNY
ILTMHRIPYSPKTGESSNRPVAFLMHGMLSSSSDWVLMGPERSLAYMLAD
AGYDVWMGNARGNTYSKAHKYWPTYWQIFWNFSWNEIGMYDVPAMIDYVL
AKTGQQQVQYVGHSQGTTVYLVMVSERPEYNDKIKSAHLLGPAAYMGNMK
SPLTRAFAPILGQPNAIVEVCGSMEFMPSNKFKQDLGIEMCQATSPYADM
CANEIFLIGGYDTEQLDYELLEHIKATSPAGASVNQNLHFCQEYNSGKFR
KFDYTALRNPYEYGSYFPPDYKLKNAKAPVLLYYGANDWMCDVSDVRKLR
DELPNMALDYLVPFEKWAHLDFIWGTEARKYVYDEVLKQMQSYEASFLDH

BO16766.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Lip3-PA 394 CG8823-PA 1..394 1..394 2130 100 Plus
CG8093-PB 398 CG8093-PB 2..397 6..392 998 49.4 Plus
CG8093-PA 398 CG8093-PA 2..397 6..392 998 49.4 Plus
CG31871-PA 531 CG31871-PA 87..438 36..394 869 47.1 Plus
CG3635-PB 425 CG3635-PB 24..419 2..394 835 41.4 Plus