Clone Sequence Records
BO16766.3prime Sequence
549 bp (531 high quality bases) assembled on 2006-10-13
> BO16766.3prime
ATGGTCTAGAAAGCTTGCTTCGTAGGATTGCATCTGCTTCAAGACCTCGT
CGTAGACGTATTTTCTGGCCTCAGTGCCCCAAATGAAATCCAGATGGGCC
CACTTCTCGAACGGCACCAGGTAGTCCAGCGCCATGTTGGGCAGTTCGTC
TCTCAACTTGCGGACATCGCTCACATCGCACATCCAGTCATTGGCTCCGT
AGTACAATAGAACCGGGGCCTTGGCATTCTTTAGCTTGTAATCCGGAGGG
AAGTAGCTGCCGTACTCATAGGGATTACGGAGAGCGGTGTAGTCGAATTT
ACGGAACTTTCCAGAGTTATATTCCTGACAAAAGTGCAAGTTCTGGTTCA
CCGATGCGCCAGCCGGAGACGTGGCCTTGATGTGCTCAAGGAGTTCGTAG
TCCAGCTGTTCGGTATCATAGCCTCCAATCAGGAAGATCTCGTTGGCGCA
CATGTCGGCATAAGGAGAAGTGGCCTGGCACATCTCTATGCCCAAATCCT
GCTTGAACTTATTGCTGGGCATGAACTCCATGGATCCGCAGACCTCCAC
BO16766.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8823-PA | 1185 | Lip3-RA | 652..1182 | 549..19 | 2655 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-RA | 1434 | CG8823-RA | 810..1340 | 549..19 | 2655 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13370334..13370711 | 19..396 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 13370788..13370941 | 396..549 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:32:48 has no hits.
BO16766.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:03 Download gff for
BO16766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8823-PA | 652..1185 | 18..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:36:22 Download gff for
BO16766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 810..1347 | 10..549 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:51:25 Download gff for
BO16766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 810..1347 | 10..549 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:51:25 Download gff for
BO16766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13370327..13370711 | 10..396 | 98 | <- | Plus |
3R | 13370789..13370941 | 397..549 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:36:22 Download gff for
BO16766.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9196049..9196433 | 10..396 | 98 | <- | Plus |
arm_3R | 9196511..9196663 | 397..549 | 100 | | Plus |
BO16766.5prime Sequence
552 bp (500 high quality bases) assembled on 2006-10-13
> BO16766.5prime
GAAGTTATCCGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTAC
TGGTCGGATTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGC
GGTGAGCGCATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGT
CACCAGTGACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCA
AAACGGGTGAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATG
CTGAGTTCTTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGC
CTATATGCTGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAG
GCAACACCTACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATC
TTCTGGAACTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGAT
GATTGATTATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGG
GCCACTCCCAGGGTACCCCTGTCTATCTGGTGATGGTGTCGGAGAGACCC
GA
BO16766.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8823-PA | 1185 | Lip3-RA | 1..536 | 17..552 | 2655 | 99.8 | Plus |
CG8093-PA | 1197 | CG8093-RA | 313..359 | 320..366 | 185 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-RA | 1434 | CG8823-RA | 159..694 | 17..552 | 2665 | 99.8 | Plus |
CG8093-RB | 1555 | CG8093-RB | 311..445 | 232..366 | 240 | 78.5 | Plus |
CG8093-RA | 1334 | CG8093-RA | 311..445 | 232..366 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13371057..13371508 | 552..101 | 2245 | 99.8 | Minus |
3R | 32079331 | 3R | 13371662..13371746 | 101..17 | 425 | 100 | Minus |
2R | 25286936 | 2R | 15215170..15215304 | 366..232 | 240 | 78.5 | Minus |
3L | 28110227 | 3L | 20460995..20461065 | 293..363 | 220 | 87.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:14:31 has no hits.
BO16766.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:04 Download gff for
BO16766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8823-PA | 1..535 | 17..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:36:21 Download gff for
BO16766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 157..693 | 13..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:09 Download gff for
BO16766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 157..693 | 13..551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:09 Download gff for
BO16766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13371663..13371748 | 13..100 | 97 | | Minus |
3R | 13371058..13371508 | 101..551 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:36:21 Download gff for
BO16766.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9196780..9197230 | 101..551 | 99 | <- | Minus |
arm_3R | 9197385..9197470 | 13..100 | 97 | | Minus |
BO16766.complete Sequence
1216 bp assembled on 2008-08-15
GenBank Submission: FJ633907
> BO16766.complete
GAAGTTATCCGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTAC
TGGTCGGATTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGC
GGTGAGCGCATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGT
CACCAGTGACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCA
AAACGGGTGAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATG
CTGAGTTCTTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGC
CTATATGCTGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAG
GCAACACCTACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATC
TTCTGGAACTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGAT
GATTGATTATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGG
GCCACTCCCAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCC
GAGTACAATGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTA
TATGGGCAACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGG
GCCAGCCCAATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCC
AGCAATAAGTTCAAGCAGGATTTGGGCATAGAGATGTGCCAGGCCACTTC
TCCTTATGCCGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATG
ATACCGAACAGCTGGACTACGAACTCCTTGAGCACATCAAGGCCACGTCT
CCGGCTGGCGCATCGGTGAACCAGAACTTGCACTTTTGTCAGGAATATAA
CTCTGGAAAGTTCCGTAAATTCGACTACACCGCTCTCCGTAATCCCTATG
AGTACGGCAGCTACTTCCCTCCGGATTACAAGCTAAAGAATGCCAAGGCC
CCGGTTCTATTGTACTACGGAGCCAATGACTGGATGTGCGATGTGAGCGA
TGTCCGCAAGTTGAGAGACGAACTGCCCAACATGGCGCTGGACTACCTGG
TGCCGTTCGAGAAGTGGGCCCATCTGGATTTCATTTGGGGCACTGAGGCC
AGAAAATACGTCTACGACGAGGTCTTGAAGCAGATGCAATCCTACGAAGC
AAGCTTTCTAGACCAT
BO16766.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-RA | 1185 | CG8823-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
CG8093-RB | 1197 | CG8093-PB | 225..359 | 232..366 | 240 | 78.5 | Plus |
CG8093-RA | 1197 | CG8093-PA | 225..359 | 232..366 | 240 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-RA | 1434 | CG8823-RA | 159..1340 | 17..1198 | 5910 | 100 | Plus |
CG8093-RB | 1555 | CG8093-RB | 311..445 | 232..366 | 240 | 78.5 | Plus |
CG8093-RA | 1334 | CG8093-RA | 311..445 | 232..366 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13370788..13371508 | 821..101 | 3605 | 100 | Minus |
3R | 32079331 | 3R | 13370334..13370711 | 1198..821 | 1890 | 100 | Minus |
3R | 32079331 | 3R | 13371662..13371746 | 101..17 | 425 | 100 | Minus |
2R | 25286936 | 2R | 15215170..15215304 | 366..232 | 240 | 78.5 | Minus |
3L | 28110227 | 3L | 20460995..20461065 | 293..363 | 220 | 87.3 | Plus |
2L | 23513712 | 2L | 22182891..22183009 | 245..363 | 220 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:07 has no hits.
BO16766.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:35:28 Download gff for
BO16766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 157..1347 | 13..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:04 Download gff for
BO16766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 159..1340 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:01 Download gff for
BO16766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 159..1340 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:26 Download gff for
BO16766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lip3-RA | 159..1340 | 17..1200 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:26 Download gff for
BO16766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13370332..13370711 | 821..1200 | 99 | <- | Minus |
3R | 13370789..13371508 | 101..820 | 100 | <- | Minus |
3R | 13371663..13371746 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:04 Download gff for
BO16766.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9196054..9196433 | 821..1200 | 99 | <- | Minus |
arm_3R | 9196511..9197230 | 101..820 | 100 | <- | Minus |
arm_3R | 9197385..9197468 | 17..100 | 100 | | Minus |
BO16766.pep Sequence
Translation from 16 to 1216
> BO16766.pep
MTRGALKVTILLVGLGLVLAGSRPISDCGERIEDDGYPMERHEVVTSDNY
ILTMHRIPYSPKTGESSNRPVAFLMHGMLSSSSDWVLMGPERSLAYMLAD
AGYDVWMGNARGNTYSKAHKYWPTYWQIFWNFSWNEIGMYDVPAMIDYVL
AKTGQQQVQYVGHSQGTTVYLVMVSERPEYNDKIKSAHLLGPAAYMGNMK
SPLTRAFAPILGQPNAIVEVCGSMEFMPSNKFKQDLGIEMCQATSPYADM
CANEIFLIGGYDTEQLDYELLEHIKATSPAGASVNQNLHFCQEYNSGKFR
KFDYTALRNPYEYGSYFPPDYKLKNAKAPVLLYYGANDWMCDVSDVRKLR
DELPNMALDYLVPFEKWAHLDFIWGTEARKYVYDEVLKQMQSYEASFLDH
BO16766.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lip3-PA | 394 | CG8823-PA | 1..394 | 1..394 | 2130 | 100 | Plus |
CG8093-PB | 398 | CG8093-PB | 2..397 | 6..392 | 998 | 49.4 | Plus |
CG8093-PA | 398 | CG8093-PA | 2..397 | 6..392 | 998 | 49.4 | Plus |
CG31871-PA | 531 | CG31871-PA | 87..438 | 36..394 | 869 | 47.1 | Plus |
CG3635-PB | 425 | CG3635-PB | 24..419 | 2..394 | 835 | 41.4 | Plus |