Clone Sequence Records
BO16767.3prime Sequence
515 bp (515 high quality bases) assembled on 2006-10-13
> BO16767.3prime
ATGGTCTAGAAAGCTTGCTTTATCCTCACACCACTCGTTCTCCTTGCGCA
CCTGTTCCTCCTCCTGTGGCAGAAAGTCATTCTGGATGGCGAAGGTGTCG
CGAATAGCCTGCGGCGACTTGCCCTTGATCATATTGGCCACCGTCTTGCA
GGTGACGTCGAGCAGACCCTGGATATTCAGGTAGTTTGCCGCGAGGATCA
GTTCGAACAGCGTGCCCTGGTCGACTTTGAGAAAGTCAGCGTCCCAGGAT
GAGATGTCATCAGTGCGCTTCTCCTTGTTCTCAACCTCTTCGGTAACCAC
AGGATCGTCCTTGTGATAGGTGGCCCAGTGGAGCACTTTCTTCAGGATCA
GCGAGTTGACATTCGGCAACGGCAGCACACTGTTGTCGCTCTCATCGCCC
AAATCCTCTATTGCAATGCGAATCGTTTCCGAGCACTTGGCGATCTCCTG
ATCCGTGTCAAAGATCTCCTTGTCCGCAGACTCCAGCCGAATGATGGGCA
TGTCGACTGATAACT
BO16767.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8881-PA | 486 | skpB-RA | 1..483 | 501..19 | 2415 | 100 | Minus |
CG16983-PE | 489 | skpA-RE | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PF | 489 | skpA-RF | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PC | 489 | skpA-RC | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PB | 489 | skpA-RB | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PG | 489 | skpA-RG | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PD | 489 | skpA-RD | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PA | 489 | skpA-RA | 442..482 | 63..23 | 155 | 95.1 | Minus |
CG16983-PH | 489 | skpA-RH | 442..482 | 63..23 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:50:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 877 | CG8881-RA | 248..730 | 501..19 | 2415 | 100 | Minus |
SkpA-RI | 826 | CG16983-RI | 167..518 | 374..23 | 440 | 75.7 | Minus |
SkpA-RH | 1544 | CG16983-RH | 885..1236 | 374..23 | 440 | 75.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12139442..12139924 | 19..501 | 2415 | 100 | Plus |
X | 23542271 | X | 657240..657591 | 374..23 | 440 | 75 | Minus |
X | 23542271 | X | 19816391..19816567 | 260..84 | 210 | 74.6 | Minus |
2R | 25286936 | 2R | 23458303..23458401 | 121..219 | 195 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:50:34 has no hits.
BO16767.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:04 Download gff for
BO16767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8881-PA | 1..486 | 16..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:40:27 Download gff for
BO16767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 240..734 | 15..509 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:02 Download gff for
BO16767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpB-RA | 240..734 | 15..509 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:02 Download gff for
BO16767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12139438..12139924 | 15..501 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:40:27 Download gff for
BO16767.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8026943..8027429 | 15..501 | 99 | <- | Plus |
BO16767.5prime Sequence
515 bp (515 high quality bases) assembled on 2006-10-13
> BO16767.5prime
GAAGTTATCAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGG
AGATCTTTGACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGC
ATTGCAATAGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTT
GCCGAATGTCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCT
ATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAG
CGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCA
GGGCACGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGG
GTCTGCTCGACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAG
TCGCCGCAGGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCC
ACAGGAGGAGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAG
CAAGCTTTCTAGACC
BO16767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8881-PA | 486 | skpB-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
CG16983-PE | 489 | skpA-RE | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PF | 489 | skpA-RF | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PC | 489 | skpA-RC | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PB | 489 | skpA-RB | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PG | 489 | skpA-RG | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PD | 489 | skpA-RD | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PA | 489 | skpA-RA | 442..482 | 455..495 | 155 | 95.1 | Plus |
CG16983-PH | 489 | skpA-RH | 442..482 | 455..495 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 877 | CG8881-RA | 248..730 | 17..499 | 2415 | 100 | Plus |
SkpA-RI | 826 | CG16983-RI | 167..518 | 144..495 | 440 | 75.7 | Plus |
SkpA-RH | 1544 | CG16983-RH | 885..1236 | 144..495 | 440 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:14:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12139442..12139924 | 499..17 | 2415 | 100 | Minus |
X | 23542271 | X | 657240..657591 | 144..495 | 440 | 75 | Plus |
X | 23542271 | X | 19816391..19816567 | 258..434 | 210 | 74.6 | Plus |
2R | 25286936 | 2R | 23458303..23458401 | 397..299 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:14:07 has no hits.
BO16767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:06 Download gff for
BO16767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8881-PA | 1..486 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:18 Download gff for
BO16767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 240..734 | 9..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:29:26 Download gff for
BO16767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpB-RA | 240..734 | 9..503 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:29:26 Download gff for
BO16767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12139438..12139924 | 17..503 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:18 Download gff for
BO16767.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8026943..8027429 | 17..503 | 99 | <- | Minus |
BO16767.complete Sequence
517 bp assembled on 2007-10-17
GenBank Submission: FJ633908
> BO16767.complete
GAAGTTATCAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGG
AGATCTTTGACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGC
ATTGCAATAGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTT
GCCGAATGTCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCT
ATCACAAGGACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAG
CGCACTGATGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCA
GGGCACGCTGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGG
GTCTGCTCGACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAG
TCGCCGCAGGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCC
ACAGGAGGAGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAG
CAAGCTTTCTAGACCAT
BO16767.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 486 | CG8881-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
SkpA-RI | 489 | CG16983-PI | 131..482 | 144..495 | 440 | 75 | Plus |
SkpA-RH | 489 | CG16983-PH | 131..482 | 144..495 | 440 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-RA | 877 | CG8881-RA | 248..730 | 17..499 | 2415 | 100 | Plus |
SkpA-RI | 826 | CG16983-RI | 167..518 | 144..495 | 440 | 75 | Plus |
SkpA-RH | 1544 | CG16983-RH | 885..1236 | 144..495 | 440 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12139442..12139924 | 499..17 | 2415 | 100 | Minus |
X | 23542271 | X | 657240..657591 | 144..495 | 440 | 75 | Plus |
X | 23542271 | X | 19816391..19816567 | 258..434 | 210 | 74.6 | Plus |
2R | 25286936 | 2R | 23458303..23458401 | 397..299 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:00:49 has no hits.
BO16767.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:16 Download gff for
BO16767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 1..486 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:53 Download gff for
BO16767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 73..567 | 9..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:07:14 Download gff for
BO16767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 248..730 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:41:49 Download gff for
BO16767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
skpB-RA | 81..563 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:17 Download gff for
BO16767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SkpB-RA | 248..730 | 17..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:17 Download gff for
BO16767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12139439..12139924 | 17..501 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:07:14 Download gff for
BO16767.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8026944..8027429 | 17..501 | 99 | | Minus |
BO16767.pep Sequence
Translation from 16 to 517
> BO16767.pep
MPIIRLESADKEIFDTDQEIAKCSETIRIAIEDLGDESDNSVLPLPNVNS
LILKKVLHWATYHKDDPVVTEEVENKEKRTDDISSWDADFLKVDQGTLFE
LILAANYLNIQGLLDVTCKTVANMIKGKSPQAIRDTFAIQNDFLPQEEEQ
VRKENEWCEDKASFLDH
BO16767.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SkpB-PA | 161 | CG8881-PA | 1..161 | 1..161 | 835 | 100 | Plus |
SkpA-PI | 162 | CG16983-PI | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PH | 162 | CG16983-PH | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PA | 162 | CG16983-PA | 1..162 | 1..161 | 622 | 73.5 | Plus |
SkpA-PD | 162 | CG16983-PD | 1..162 | 1..161 | 622 | 73.5 | Plus |