Clone BO16768 Report

Search the DGRC for BO16768

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptAcp26Ab-RA
Protein status:BO16768.pep: validated full length
Sequenced Size:304

Clone Sequence Records

BO16768.3prime Sequence

302 bp (302 high quality bases) assembled on 2006-10-13

> BO16768.3prime
ATGGTCTAGAAAGCTTGCTGCCATGTTCAGTTGCTGGCGCACACTCTCTA
TTTCATCAGGACTCATGACATCCGAGTTGAAGTCTGCTTTGTGAGTTTGT
ATCAAATGCCCAGTCGCATCGTTCACACTATCCTGAACACTGTAGTCGTA
TAGGGTTCTCAACATGCCATTCATCACTTTCTGGGATCTTGATTGTGAAC
TAGACTGAACGCTTATAAAGGGGGCAGCATCGCTAAATTGCCAAAGGCAA
ATGCAGGAGAAAATGCAGATCACCGCGAAGTAGTTCATGTCGACTGATAA
CT

BO16768.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9024-PA 273 Acp26Ab-RA 1..270 288..19 1350 100 Minus
CG9024-PB 273 Acp26Ab-RB 1..270 288..19 1350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-RC 408 CG9024-RC 26..295 288..19 1350 100 Minus
Acp26Ab-RB 504 CG9024-RB 26..295 288..19 1350 100 Minus
Acp26Ab-RA 453 CG9024-RA 26..295 288..19 1350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5892507..5892745 19..257 1195 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:58:44 has no hits.

BO16768.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:06 Download gff for BO16768.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9024-PB 1..273 15..288 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:57 Download gff for BO16768.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 20..301 10..293 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:54 Download gff for BO16768.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 20..301 10..293 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:54 Download gff for BO16768.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5892504..5892745 14..257 98 <- Plus
2L 5892807..5892843 258..293 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:57 Download gff for BO16768.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5892504..5892745 14..257 98 <- Plus
arm_2L 5892807..5892843 258..293 94   Plus

BO16768.5prime Sequence

302 bp (302 high quality bases) assembled on 2006-10-13

> BO16768.5prime
GAAGTTATCAGTCGACATGAACTACTTCGCGGTGATCTGCATTTTCTCCT
GCATTTGCCTTTGGCAATTTAGCGATGCTGCCCCCTTTATAAGCGTTCAG
TCTAGTTCACAATCAAGATCCCAGAAAGTGATGAATGGCATGTTGAGAAC
CCTATACGACTACAGTGTTCAGGATAGTGTGAACGATGCGACTGGGCATT
TGATACAAACTCACAAAGCAGACTTCAACTCGGATGTCATGAGTCCTGAT
GAAATAGAGAGTGTGCGCCAGCAACTGAACATGGCAGCAAGCTTTCTAGA
CC

BO16768.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9024-PA 273 Acp26Ab-RA 1..270 17..286 1350 100 Plus
CG9024-PB 273 Acp26Ab-RB 1..270 17..286 1350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:52
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-RC 408 CG9024-RC 26..295 17..286 1350 100 Plus
Acp26Ab-RB 504 CG9024-RB 26..295 17..286 1350 100 Plus
Acp26Ab-RA 453 CG9024-RA 26..295 17..286 1350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5892507..5892745 286..48 1195 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:28:48 has no hits.

BO16768.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:07 Download gff for BO16768.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9024-PB 1..273 17..290 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:02 Download gff for BO16768.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 20..301 12..295 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:00 Download gff for BO16768.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 20..301 12..295 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:00 Download gff for BO16768.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5892504..5892745 48..291 98 <- Minus
2L 5892807..5892843 12..47 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:02 Download gff for BO16768.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5892504..5892745 48..291 98 <- Minus
arm_2L 5892807..5892843 12..47 94   Minus

BO16768.complete Sequence

304 bp assembled on 2006-10-11

GenBank Submission: FJ633909

> BO16768.complete
GAAGTTATCAGTCGACATGAACTACTTCGCGGTGATCTGCATTTTCTCCT
GCATTTGCCTTTGGCAATTTAGCGATGCTGCCCCCTTTATAAGCGTTCAG
TCTAGTTCACAATCAAGATCCCAGAAAGTGATGAATGGCATGTTGAGAAC
CCTATACGACTACAGTGTTCAGGATAGTGTGAACGATGCGACTGGGCATT
TGATACAAACTCACAAAGCAGACTTCAACTCGGATGTCATGAGTCCTGAT
GAAATAGAGAGTGTGCGCCAGCAACTGAACATGGCAGCAAGCTTTCTAGA
CCAT

BO16768.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-RC 273 CG9024-PC 1..270 17..286 1350 100 Plus
Acp26Ab-RB 273 CG9024-PB 1..270 17..286 1350 100 Plus
Acp26Ab-RA 273 CG9024-PA 1..270 17..286 1350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-RC 408 CG9024-RC 26..295 17..286 1350 100 Plus
Acp26Ab-RB 504 CG9024-RB 26..295 17..286 1350 100 Plus
Acp26Ab-RA 453 CG9024-RA 26..295 17..286 1350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5892507..5892745 286..48 1195 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:19:14 has no hits.

BO16768.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:17 Download gff for BO16768.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RB 1..273 17..290 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:05 Download gff for BO16768.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RB 20..301 12..295 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:54 Download gff for BO16768.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 26..295 17..288 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:17 Download gff for BO16768.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RB 20..301 12..295 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:44 Download gff for BO16768.complete
Subject Subject Range Query Range Percent Splice Strand
Acp26Ab-RA 26..295 17..288 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:44 Download gff for BO16768.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5892505..5892745 48..288 99 <- Minus
2L 5892807..5892837 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:54 Download gff for BO16768.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5892505..5892745 48..288 99 <- Minus
arm_2L 5892807..5892837 17..47 100   Minus

BO16768.pep Sequence

Translation from 16 to 304

> BO16768.pep
MNYFAVICIFSCICLWQFSDAAPFISVQSSSQSRSQKVMNGMLRTLYDYS
VQDSVNDATGHLIQTHKADFNSDVMSPDEIESVRQQLNMAASFLDH

BO16768.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
Acp26Ab-PC 90 CG9024-PC 1..90 1..90 466 100 Plus
Acp26Ab-PB 90 CG9024-PB 1..90 1..90 466 100 Plus
Acp26Ab-PA 90 CG9024-PA 1..90 1..90 466 100 Plus