Clone Sequence Records
BO16768.3prime Sequence
302 bp (302 high quality bases) assembled on 2006-10-13
> BO16768.3prime
ATGGTCTAGAAAGCTTGCTGCCATGTTCAGTTGCTGGCGCACACTCTCTA
TTTCATCAGGACTCATGACATCCGAGTTGAAGTCTGCTTTGTGAGTTTGT
ATCAAATGCCCAGTCGCATCGTTCACACTATCCTGAACACTGTAGTCGTA
TAGGGTTCTCAACATGCCATTCATCACTTTCTGGGATCTTGATTGTGAAC
TAGACTGAACGCTTATAAAGGGGGCAGCATCGCTAAATTGCCAAAGGCAA
ATGCAGGAGAAAATGCAGATCACCGCGAAGTAGTTCATGTCGACTGATAA
CT
BO16768.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9024-PA | 273 | Acp26Ab-RA | 1..270 | 288..19 | 1350 | 100 | Minus |
CG9024-PB | 273 | Acp26Ab-RB | 1..270 | 288..19 | 1350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp26Ab-RC | 408 | CG9024-RC | 26..295 | 288..19 | 1350 | 100 | Minus |
Acp26Ab-RB | 504 | CG9024-RB | 26..295 | 288..19 | 1350 | 100 | Minus |
Acp26Ab-RA | 453 | CG9024-RA | 26..295 | 288..19 | 1350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5892507..5892745 | 19..257 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:58:44 has no hits.
BO16768.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:06 Download gff for
BO16768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9024-PB | 1..273 | 15..288 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:57 Download gff for
BO16768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RA | 20..301 | 10..293 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:54 Download gff for
BO16768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RA | 20..301 | 10..293 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:54 Download gff for
BO16768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5892504..5892745 | 14..257 | 98 | <- | Plus |
2L | 5892807..5892843 | 258..293 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:57 Download gff for
BO16768.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5892504..5892745 | 14..257 | 98 | <- | Plus |
arm_2L | 5892807..5892843 | 258..293 | 94 | | Plus |
BO16768.5prime Sequence
302 bp (302 high quality bases) assembled on 2006-10-13
> BO16768.5prime
GAAGTTATCAGTCGACATGAACTACTTCGCGGTGATCTGCATTTTCTCCT
GCATTTGCCTTTGGCAATTTAGCGATGCTGCCCCCTTTATAAGCGTTCAG
TCTAGTTCACAATCAAGATCCCAGAAAGTGATGAATGGCATGTTGAGAAC
CCTATACGACTACAGTGTTCAGGATAGTGTGAACGATGCGACTGGGCATT
TGATACAAACTCACAAAGCAGACTTCAACTCGGATGTCATGAGTCCTGAT
GAAATAGAGAGTGTGCGCCAGCAACTGAACATGGCAGCAAGCTTTCTAGA
CC
BO16768.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9024-PA | 273 | Acp26Ab-RA | 1..270 | 17..286 | 1350 | 100 | Plus |
CG9024-PB | 273 | Acp26Ab-RB | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp26Ab-RC | 408 | CG9024-RC | 26..295 | 17..286 | 1350 | 100 | Plus |
Acp26Ab-RB | 504 | CG9024-RB | 26..295 | 17..286 | 1350 | 100 | Plus |
Acp26Ab-RA | 453 | CG9024-RA | 26..295 | 17..286 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5892507..5892745 | 286..48 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:28:48 has no hits.
BO16768.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:07 Download gff for
BO16768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9024-PB | 1..273 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:02 Download gff for
BO16768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RA | 20..301 | 12..295 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:00 Download gff for
BO16768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RA | 20..301 | 12..295 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:00 Download gff for
BO16768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5892504..5892745 | 48..291 | 98 | <- | Minus |
2L | 5892807..5892843 | 12..47 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:02 Download gff for
BO16768.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5892504..5892745 | 48..291 | 98 | <- | Minus |
arm_2L | 5892807..5892843 | 12..47 | 94 | | Minus |
BO16768.complete Sequence
304 bp assembled on 2006-10-11
GenBank Submission: FJ633909
> BO16768.complete
GAAGTTATCAGTCGACATGAACTACTTCGCGGTGATCTGCATTTTCTCCT
GCATTTGCCTTTGGCAATTTAGCGATGCTGCCCCCTTTATAAGCGTTCAG
TCTAGTTCACAATCAAGATCCCAGAAAGTGATGAATGGCATGTTGAGAAC
CCTATACGACTACAGTGTTCAGGATAGTGTGAACGATGCGACTGGGCATT
TGATACAAACTCACAAAGCAGACTTCAACTCGGATGTCATGAGTCCTGAT
GAAATAGAGAGTGTGCGCCAGCAACTGAACATGGCAGCAAGCTTTCTAGA
CCAT
BO16768.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp26Ab-RC | 273 | CG9024-PC | 1..270 | 17..286 | 1350 | 100 | Plus |
Acp26Ab-RB | 273 | CG9024-PB | 1..270 | 17..286 | 1350 | 100 | Plus |
Acp26Ab-RA | 273 | CG9024-PA | 1..270 | 17..286 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp26Ab-RC | 408 | CG9024-RC | 26..295 | 17..286 | 1350 | 100 | Plus |
Acp26Ab-RB | 504 | CG9024-RB | 26..295 | 17..286 | 1350 | 100 | Plus |
Acp26Ab-RA | 453 | CG9024-RA | 26..295 | 17..286 | 1350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5892507..5892745 | 286..48 | 1195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:19:14 has no hits.
BO16768.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:17 Download gff for
BO16768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RB | 1..273 | 17..290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:05 Download gff for
BO16768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RB | 20..301 | 12..295 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:54 Download gff for
BO16768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RA | 26..295 | 17..288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:17 Download gff for
BO16768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RB | 20..301 | 12..295 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:44 Download gff for
BO16768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp26Ab-RA | 26..295 | 17..288 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:44 Download gff for
BO16768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5892505..5892745 | 48..288 | 99 | <- | Minus |
2L | 5892807..5892837 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:54 Download gff for
BO16768.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5892505..5892745 | 48..288 | 99 | <- | Minus |
arm_2L | 5892807..5892837 | 17..47 | 100 | | Minus |
BO16768.pep Sequence
Translation from 16 to 304
> BO16768.pep
MNYFAVICIFSCICLWQFSDAAPFISVQSSSQSRSQKVMNGMLRTLYDYS
VQDSVNDATGHLIQTHKADFNSDVMSPDEIESVRQQLNMAASFLDH
BO16768.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp26Ab-PC | 90 | CG9024-PC | 1..90 | 1..90 | 466 | 100 | Plus |
Acp26Ab-PB | 90 | CG9024-PB | 1..90 | 1..90 | 466 | 100 | Plus |
Acp26Ab-PA | 90 | CG9024-PA | 1..90 | 1..90 | 466 | 100 | Plus |