Clone Sequence Records
BO16770.3prime Sequence
389 bp (389 high quality bases) assembled on 2006-10-13
> BO16770.3prime
ATGGTCTAGAAAGCTTGCCCACTGGATGGGCTGAGGAGCGTAGACGGGGG
CGTACTGCGAGTAGGCACCGGCGGATCCATAGCTGGGAGCTGGGGCGCTG
CATGGCACTGGGGCCAGGTTGGGCTGGCAGCTGAACAGGTAGTTCTTGGG
GCAAGGAGGAGCCGGGATCGAGACCGGAGCGGCGGCGTAGGATGGAGCAG
CTGGGGCGGCGTAGGCCTGGGGAGCGGCAGCCGGAGCGGAGTAGGATGGA
GCCGGAGCAGCGGCGGGCTTGCCGTAGCCACCACCGTACGAGGAGCCGAG
CATCTTATCCTCCTTATCGGCGGCAACGAAAGCGGCCAGCAGGCAGATGG
TGGAGACGATGGCGATGCACTTCATGTCGACTGATAACT
BO16770.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9271-PA | 360 | Vm34Ca-RA | 1..357 | 375..19 | 1785 | 100 | Minus |
CG9048-PA | 426 | Vm26Aa-RA | 214..323 | 168..59 | 375 | 93.6 | Minus |
CG9046-PA | 507 | Vm26Ab-RA | 367..399 | 153..121 | 165 | 100 | Minus |
CG16874-PA | 351 | Vm32E-RA | 133..169 | 144..108 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 491 | CG9271-RA | 45..403 | 377..19 | 1795 | 100 | Minus |
Vm26Aa-RB | 745 | CG9048-RB | 295..404 | 168..59 | 445 | 93.6 | Minus |
Vm26Aa-RA | 641 | CG9048-RA | 295..404 | 168..59 | 445 | 93.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13411229..13411587 | 19..377 | 1795 | 100 | Plus |
2L | 23513712 | 2L | 5959937..5960046 | 59..168 | 445 | 93.6 | Plus |
2L | 23513712 | 2L | 5957403..5957534 | 182..51 | 300 | 81.8 | Minus |
2L | 23513712 | 2L | 11171466..11171524 | 108..166 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:07:55 has no hits.
BO16770.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:07 Download gff for
BO16770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9271-PA | 1..360 | 18..375 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:47 Download gff for
BO16770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 24..388 | 19..383 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:45 Download gff for
BO16770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..403 | 19..383 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:45 Download gff for
BO16770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13411229..13411593 | 19..383 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:47 Download gff for
BO16770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13411229..13411593 | 19..383 | 99 | | Plus |
BO16770.5prime Sequence
389 bp (389 high quality bases) assembled on 2006-10-13
> BO16770.5prime
GAAGTTATCCCTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCC
TGCTGGCCGCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCC
TCGTACGGTGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTA
CTCCGCTCCGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCAT
CCTACGCCGCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAAC
TACCTGTTCAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCC
AGCTCCCAGCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCT
ACGCTCCTCAGCCCATCCAGTGGGCAAGCTTTCTAGACC
BO16770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9271-PA | 360 | Vm34Ca-RA | 1..357 | 17..373 | 1785 | 100 | Plus |
CG9048-PA | 426 | Vm26Aa-RA | 214..323 | 224..333 | 375 | 93.6 | Plus |
CG9046-PA | 507 | Vm26Ab-RA | 367..399 | 239..271 | 165 | 100 | Plus |
CG16874-PA | 351 | Vm32E-RA | 133..169 | 248..284 | 135 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 491 | CG9271-RA | 45..403 | 15..373 | 1795 | 100 | Plus |
Vm26Aa-RB | 745 | CG9048-RB | 295..404 | 224..333 | 445 | 93.6 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 295..404 | 224..333 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13411229..13411587 | 373..15 | 1795 | 100 | Minus |
2L | 23513712 | 2L | 5959937..5960046 | 333..224 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957403..5957534 | 210..341 | 300 | 81.8 | Plus |
2L | 23513712 | 2L | 11171466..11171524 | 284..226 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:45:51 has no hits.
BO16770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:09 Download gff for
BO16770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9271-PA | 1..360 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:58 Download gff for
BO16770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 27..388 | 12..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:52 Download gff for
BO16770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 42..403 | 12..373 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:52 Download gff for
BO16770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13411229..13411590 | 12..373 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:58 Download gff for
BO16770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13411229..13411590 | 12..373 | 99 | | Minus |
BO16770.complete Sequence
391 bp assembled on 2006-10-11
GenBank Submission: FJ633910
> BO16770.complete
GAAGTTATCAGTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCC
TGCTGGCCGCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCC
TCGTACGGTGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTA
CTCCGCTCCGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCAT
CCTACGCCGCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAAC
TACCTGTTCAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCC
AGCTCCCAGCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCT
ACGCTCCTCAGCCCATCCAGTGGGCAAGCTTTCTAGACCAT
BO16770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 360 | CG9271-PA | 1..357 | 17..373 | 1785 | 100 | Plus |
Vm26Aa-RB | 426 | CG9048-PB | 214..323 | 224..333 | 445 | 93.6 | Plus |
Vm26Aa-RA | 426 | CG9048-PA | 214..323 | 224..333 | 445 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-RA | 491 | CG9271-RA | 45..403 | 15..373 | 1795 | 100 | Plus |
Vm26Aa-RB | 745 | CG9048-RB | 295..404 | 224..333 | 445 | 93.6 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 295..404 | 224..333 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13411229..13411587 | 373..15 | 1795 | 100 | Minus |
2L | 23513712 | 2L | 5959937..5960046 | 333..224 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957403..5957534 | 210..341 | 300 | 81.8 | Plus |
2L | 23513712 | 2L | 11171466..11171524 | 284..226 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:18:26 has no hits.
BO16770.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:57 Download gff for
BO16770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 1..360 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:11 Download gff for
BO16770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..403 | 9..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:31 Download gff for
BO16770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 32..388 | 17..375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:57 Download gff for
BO16770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 39..403 | 9..373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:56 Download gff for
BO16770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm34Ca-RA | 47..403 | 17..375 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:56 Download gff for
BO16770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13411227..13411585 | 17..375 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:31 Download gff for
BO16770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13411227..13411585 | 17..375 | 99 | | Minus |
BO16770.pep Sequence
Translation from 16 to 391
> BO16770.pep
MKCIAIVSTICLLAAFVAADKEDKMLGSSYGGGYGKPAAAPAPSYSAPAA
APQAYAAPAAPSYAAAPVSIPAPPCPKNYLFSCQPNLAPVPCSAPAPSYG
SAGAYSQYAPVYAPQPIQWASFLDH
BO16770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm34Ca-PA | 119 | CG9271-PA | 1..119 | 1..119 | 638 | 100 | Plus |
Vm26Ab-PB | 168 | CG9046-PB | 50..161 | 32..113 | 302 | 58.9 | Plus |
Vm26Ab-PA | 168 | CG9046-PA | 50..161 | 32..113 | 302 | 58.9 | Plus |
Vm32E-PB | 116 | CG16874-PB | 16..83 | 33..116 | 227 | 53.6 | Plus |
Vm32E-PA | 116 | CG16874-PA | 16..83 | 33..116 | 227 | 53.6 | Plus |