Clone BO16770 Report

Search the DGRC for BO16770

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptVm34Ca-RA
Protein status:BO16770.pep: validated full length
Sequenced Size:391

Clone Sequence Records

BO16770.3prime Sequence

389 bp (389 high quality bases) assembled on 2006-10-13

> BO16770.3prime
ATGGTCTAGAAAGCTTGCCCACTGGATGGGCTGAGGAGCGTAGACGGGGG
CGTACTGCGAGTAGGCACCGGCGGATCCATAGCTGGGAGCTGGGGCGCTG
CATGGCACTGGGGCCAGGTTGGGCTGGCAGCTGAACAGGTAGTTCTTGGG
GCAAGGAGGAGCCGGGATCGAGACCGGAGCGGCGGCGTAGGATGGAGCAG
CTGGGGCGGCGTAGGCCTGGGGAGCGGCAGCCGGAGCGGAGTAGGATGGA
GCCGGAGCAGCGGCGGGCTTGCCGTAGCCACCACCGTACGAGGAGCCGAG
CATCTTATCCTCCTTATCGGCGGCAACGAAAGCGGCCAGCAGGCAGATGG
TGGAGACGATGGCGATGCACTTCATGTCGACTGATAACT

BO16770.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9271-PA 360 Vm34Ca-RA 1..357 375..19 1785 100 Minus
CG9048-PA 426 Vm26Aa-RA 214..323 168..59 375 93.6 Minus
CG9046-PA 507 Vm26Ab-RA 367..399 153..121 165 100 Minus
CG16874-PA 351 Vm32E-RA 133..169 144..108 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 491 CG9271-RA 45..403 377..19 1795 100 Minus
Vm26Aa-RB 745 CG9048-RB 295..404 168..59 445 93.6 Minus
Vm26Aa-RA 641 CG9048-RA 295..404 168..59 445 93.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13411229..13411587 19..377 1795 100 Plus
2L 23513712 2L 5959937..5960046 59..168 445 93.6 Plus
2L 23513712 2L 5957403..5957534 182..51 300 81.8 Minus
2L 23513712 2L 11171466..11171524 108..166 205 89.8 Plus
Blast to na_te.dros performed on 2015-02-11 09:07:55 has no hits.

BO16770.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:07 Download gff for BO16770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9271-PA 1..360 18..375 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:47 Download gff for BO16770.3prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 24..388 19..383 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:45 Download gff for BO16770.3prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..403 19..383 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:45 Download gff for BO16770.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13411229..13411593 19..383 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:47 Download gff for BO16770.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13411229..13411593 19..383 99   Plus

BO16770.5prime Sequence

389 bp (389 high quality bases) assembled on 2006-10-13

> BO16770.5prime
GAAGTTATCCCTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCC
TGCTGGCCGCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCC
TCGTACGGTGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTA
CTCCGCTCCGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCAT
CCTACGCCGCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAAC
TACCTGTTCAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCC
AGCTCCCAGCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCT
ACGCTCCTCAGCCCATCCAGTGGGCAAGCTTTCTAGACC

BO16770.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9271-PA 360 Vm34Ca-RA 1..357 17..373 1785 100 Plus
CG9048-PA 426 Vm26Aa-RA 214..323 224..333 375 93.6 Plus
CG9046-PA 507 Vm26Ab-RA 367..399 239..271 165 100 Plus
CG16874-PA 351 Vm32E-RA 133..169 248..284 135 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 491 CG9271-RA 45..403 15..373 1795 100 Plus
Vm26Aa-RB 745 CG9048-RB 295..404 224..333 445 93.6 Plus
Vm26Aa-RA 641 CG9048-RA 295..404 224..333 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13411229..13411587 373..15 1795 100 Minus
2L 23513712 2L 5959937..5960046 333..224 445 93.6 Minus
2L 23513712 2L 5957403..5957534 210..341 300 81.8 Plus
2L 23513712 2L 11171466..11171524 284..226 205 89.8 Minus
Blast to na_te.dros performed on 2015-01-30 17:45:51 has no hits.

BO16770.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:09 Download gff for BO16770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9271-PA 1..360 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:58 Download gff for BO16770.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 27..388 12..373 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:52 Download gff for BO16770.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 42..403 12..373 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:52 Download gff for BO16770.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13411229..13411590 12..373 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:58 Download gff for BO16770.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13411229..13411590 12..373 99   Minus

BO16770.complete Sequence

391 bp assembled on 2006-10-11

GenBank Submission: FJ633910

> BO16770.complete
GAAGTTATCAGTCGACATGAAGTGCATCGCCATCGTCTCCACCATCTGCC
TGCTGGCCGCTTTCGTTGCCGCCGATAAGGAGGATAAGATGCTCGGCTCC
TCGTACGGTGGTGGCTACGGCAAGCCCGCCGCTGCTCCGGCTCCATCCTA
CTCCGCTCCGGCTGCCGCTCCCCAGGCCTACGCCGCCCCAGCTGCTCCAT
CCTACGCCGCCGCTCCGGTCTCGATCCCGGCTCCTCCTTGCCCCAAGAAC
TACCTGTTCAGCTGCCAGCCCAACCTGGCCCCAGTGCCATGCAGCGCCCC
AGCTCCCAGCTATGGATCCGCCGGTGCCTACTCGCAGTACGCCCCCGTCT
ACGCTCCTCAGCCCATCCAGTGGGCAAGCTTTCTAGACCAT

BO16770.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 360 CG9271-PA 1..357 17..373 1785 100 Plus
Vm26Aa-RB 426 CG9048-PB 214..323 224..333 445 93.6 Plus
Vm26Aa-RA 426 CG9048-PA 214..323 224..333 445 93.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-RA 491 CG9271-RA 45..403 15..373 1795 100 Plus
Vm26Aa-RB 745 CG9048-RB 295..404 224..333 445 93.6 Plus
Vm26Aa-RA 641 CG9048-RA 295..404 224..333 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13411229..13411587 373..15 1795 100 Minus
2L 23513712 2L 5959937..5960046 333..224 445 93.6 Minus
2L 23513712 2L 5957403..5957534 210..341 300 81.8 Plus
2L 23513712 2L 11171466..11171524 284..226 205 89.8 Minus
Blast to na_te.dros performed on 2014-11-27 07:18:26 has no hits.

BO16770.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:57 Download gff for BO16770.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 1..360 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:11 Download gff for BO16770.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..403 9..373 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:31 Download gff for BO16770.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 32..388 17..375 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:57 Download gff for BO16770.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 39..403 9..373 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:56 Download gff for BO16770.complete
Subject Subject Range Query Range Percent Splice Strand
Vm34Ca-RA 47..403 17..375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:56 Download gff for BO16770.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13411227..13411585 17..375 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:31 Download gff for BO16770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13411227..13411585 17..375 99   Minus

BO16770.pep Sequence

Translation from 16 to 391

> BO16770.pep
MKCIAIVSTICLLAAFVAADKEDKMLGSSYGGGYGKPAAAPAPSYSAPAA
APQAYAAPAAPSYAAAPVSIPAPPCPKNYLFSCQPNLAPVPCSAPAPSYG
SAGAYSQYAPVYAPQPIQWASFLDH

BO16770.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vm34Ca-PA 119 CG9271-PA 1..119 1..119 638 100 Plus
Vm26Ab-PB 168 CG9046-PB 50..161 32..113 302 58.9 Plus
Vm26Ab-PA 168 CG9046-PA 50..161 32..113 302 58.9 Plus
Vm32E-PB 116 CG16874-PB 16..83 33..116 227 53.6 Plus
Vm32E-PA 116 CG16874-PA 16..83 33..116 227 53.6 Plus