Clone Sequence Records
BO16773.3prime Sequence
607 bp (580 high quality bases) assembled on 2006-10-13
> BO16773.3prime
ATGGTCTAGAAAGCTTGCGCTCTTGGTCAAGTAGGTCTCTTGAAAGTCTC
CCAACCGACTGGCCAGCAGCTGTCCCTTGTCCCGAAACTTCTTCAGGCTG
AGCTGCAACACCTCCATCGATTGTATTTGTTTGGTCAGCTCCGCGGTCCT
TACGTTCAGGTCATTCAGTGTCTCATTGGACTGGGCTTCCCAGCAATTTC
GGACCGTTGCCAGGTGCTGTCGCAACTGGAGCTCAAAACCGCTAACAGTT
TCGTGCACATCCGACCGCAGACGTTGTTGCAAGAGCCTGGCGTACTGGCT
CTTGAAACTTCGCTCTTGGGCGGCAGTTGTCCAAGCGGCGTACTCGTAGA
TGTAAAAGGATCCGACGAGCCCACCAAGGATCAATACAATTGGCCAGTTG
AACGAACGGATGGCCATGGCGCTCAGTAAAACGGTGCCCAAGCTACCTTT
AGACTTCACCAAAGATTCCAGCATCTGCCAATGGTTTCCGTTAACTAAAG
GTGGCAGGGGCGAACATTTCTTGTGACCATTTTGTAACTTTTGAATTCGA
AATGGACTTGCGTGCAACGGTAGGTTGCCTTCAAGACGATGCCACAGGGC
AGTAAAA
BO16773.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4568-PA | 2157 | fzo-RA | 1566..2154 | 607..19 | 2895 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-RA | 2391 | CG4568-RA | 1639..2227 | 607..19 | 2915 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:34:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23201808..23202396 | 19..607 | 2915 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:34:21 has no hits.
BO16773.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:12 Download gff for
BO16773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4568-PA | 1570..2157 | 16..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:11:06 Download gff for
BO16773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 1643..2235 | 11..603 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:54:42 Download gff for
BO16773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 1643..2235 | 11..603 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:54:42 Download gff for
BO16773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23201800..23202392 | 11..603 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:11:06 Download gff for
BO16773.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19027522..19028114 | 11..603 | 98 | | Plus |
BO16773.5prime Sequence
664 bp (493 high quality bases) assembled on 2006-10-13
> BO16773.5prime
GAAGTTATCAGTCGACATGGCGGAATCTGACTCCGGAGAAAGTACGTCGT
CGGTGTCCTCGTTTATATCCTCATCGTCGTCTTCGCGATTAAGTGAGTTT
GTGGACGCAAAGACAGAACTGCAGGATATATATCACGATTTGAGTAATTA
CCTGTCCAATTTCCTAACCATTTTGGAGGAGACTGTCCTGTTAAAAGATC
GACAAATGCTGGAGCACCTGTGCGCCTTCTCCAGCAGGGTGGAGGCCATT
GCAAAGGTTCTTTCACGTGATCGAATGAAGGTGGCATTTTTTGGACGCAC
CTCAAATGGAAAAAGTGCCGTGATCAATGCACTTCTGCATGAAAAAATCC
TGCCCAGCGCCATGGGCCATACCACCAGCTGTTTTTGTCAAGTGCAAGCT
AATGGCTCGAATGAAACCGAGCACGTAAAGGTCGAGCAGGAGGATGAGCA
TATGGAACTGAGTGCCCTAAGCCAACTGGCCAGTGCACATTCTCCTGGGG
CCCTAAAACCCTCAACTCTGCTGCAGGTCAATATGGCCAAGAACCGTTGC
TCGATATTGGATTACGATGTGGTTTTGATGGATACACCTGGAGTGGATGT
AACAGCGCAACTGGACGATTGGCTAGATAGCTACTGCATGGATGCGGATG
TTTTCATTCTAGTT
BO16773.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4568-PA | 2157 | fzo-RA | 1..648 | 17..664 | 3215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-RA | 2391 | CG4568-RA | 74..721 | 17..664 | 3225 | 99.8 | Plus |
| Marf-RD | 3617 | CG3869-RD | 920..1039 | 275..394 | 180 | 76.7 | Plus |
| Marf-RC | 3605 | CG3869-RC | 920..1039 | 275..394 | 180 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23203314..23203961 | 664..17 | 3225 | 99.8 | Minus |
| X | 23542271 | X | 6367463..6367582 | 275..394 | 180 | 76.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:00:54 has no hits.
BO16773.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:12 Download gff for
BO16773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4568-PA | 1..648 | 17..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:57:17 Download gff for
BO16773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 68..721 | 7..664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:19 Download gff for
BO16773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 68..721 | 7..664 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:19 Download gff for
BO16773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23203314..23203967 | 7..664 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:57:17 Download gff for
BO16773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19029036..19029689 | 7..664 | 99 | | Minus |
BO16773.complete Sequence
2188 bp assembled on 2007-03-23
GenBank Submission: FJ633911
> BO16773.complete
GAAGTTATCAGTCGACATGGCGGAATCTGACTCCGGAGAAAGTACGTCGT
CGGTGTCCTCGTTTATATCCTCATCGTCGTCTTCGCGATTAAGTGAGTTT
GTGGACGCAAAGACAGAACTGCAGGATATATATCACGATTTGAGTAATTA
CCTGTCCAATTTCCTAACCATTTTGGAGGAGACTGTCCTGTTAAAAGATC
GACAAATGCTGGAGCACCTGTGCGCCTTCTCCAGCAGGGTGGAGGCCATT
GCAAAGGTTCTTTCACGTGATCGAATGAAGGTGGCATTTTTTGGACGCAC
CTCAAATGGAAAAAGTGCCGTGATCAATGCACTTCTGCATGAAAAAATCC
TGCCCAGCGCCATGGGCCATACCACCAGCTGTTTTTGTCAAGTGCAAGCT
AATGGCTCGAATGAAACCGAGCACGTAAAGGTCGAGCAGGAGGATGAGCA
TATGGAACTGAGTGCCCTAAGCCAACTGGCCAGTGCACATTCTCCTGGGG
CCCTAAAACCCTCAACTCTGCTGCAGGTCAATATGGCCAAGAACCGTTGC
TCGATATTGGATTACGATGTGGTTTTGATGGATACACCTGGAGTGGATGT
AACAGCGCAACTGGACGATTGCCTAGATAGCTACTGCATGGATGCGGATG
TTTTCATTCTAGTTCTCAACGCCGAGTCCACTGTTTCGCGCGTGGAAAGG
CAGTTCTTCAAGGACGTGGCATCCAAACTCTCGCGTCCAAATCTCTTTAT
ACTCAACAATCGATGGGATAAGGCCAGCAGTCTGGAGCCGGAAATGGAGC
AGAAGGTAAAGGATCAGCATATGGAACGTTGCGTTAACCTGCTCGTGGAT
GAATTAGGTGTTTATTCAACTGCACAGGAAGCGTGGGAAAGGATCTATCA
TGTTTCAGCACTGGAGGCATTGCATATAAGGAATGGTCAGATTACGAATC
CCTCGGGACAAACCCAACAGCGATATCAGGAGTTTCTGCGTTTCGAAAAT
GATTTTTCGAATTGCCTCGCGGTGTCAGCGTTAAAAACCAAATTTGGTCC
ACACTTGCTAAGTGCGCAGAAGATTTTAAACCAGTTAAAATCAACTCTGA
TATGCCCTTTCATAGAGAAAGTAAGTCGTCTTATCGATGAGAATAAGGAG
AGAAGAGCTAACTTGAATGCCGAAATAGAGGACTGGTTAATACTAATGCA
AGAGGATAGAGAAGCGCTTCAATATTGTTTCGAAGAACTGACTGAAATGA
CACAAAGAGTAGGTCGGTGCGTTTTGAACGACCAGATAAAAACGTTAATA
CCCTCGTCTGTGCTATCATTCTCGCAACCATTTCACCCGGAATTCCCAGC
ACAAATAGGCCAGTACCAACGCTCGTTATGTGCCCATTTGGATAAACTTC
TTGAAGATCGTGTCCTTCAATGTCTCTCCATACCCCTACAAAGAAAAATA
TTAGATATAGAGAAAGAAATTGGGCTTCCGATCGCCGAGAACTCTTGCGA
TTGGCAACTAATCTACGGCCTGGATTGCCAATCCTATATGAGTGACTTTC
AGCCAGATCTTAGGTTTCGATTTTCTTTGGGTTTTACTGCCCTGTGGCAT
CGTCTTGAAGGCAACCTACCGTTGCACGCAAGTCCATTTCGAATTCAAAA
GTTACAAAATGGTCACAAGAAATGTTCGCCCCTGCCACCTTTAGTTAACG
GAAACCATTGGCAGATGCTGGAATCTTTGGTGAAGTCTAAAGGTAGCTTG
GGCACCGTTTTACTGAGCGCCATGGCCATCCGTTCGTTCAACTGGCCAAT
TGTATTGATCCTTGGTGGGCTCGTCGGATCCTTTTACATCTACGAGTACG
CCGCTTGGACAACTGCCGCCCAAGAGCGAAGTTTCAAGAGCCAGTACGCC
AGGCTCTTGCAACAACGTCTGCGGTCGGATGTGCAGCAAACTGTTAGCGG
TTTTGAGCTCCAGTTGCGACAGCACCTGGCAACGGTCCGAAATTGCTGGG
AAGCCCAGTCCAATGAGACACTGAATGACCTGAACGTAAGGACCGCGGAG
CTGACCAAACAAATACAATCGATGGAGGTGTTGCAGCTCAGCCTGAAGAA
GTTTCGGGACAAGGGACAGCTGCTGGCCAGTCGGTTGGGAGACTTTCAAG
AGACCTACTTGACCAAGAGCGCAAGCTTTCTAGACCAT
BO16773.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-RA | 2157 | CG4568-PA | 1..2154 | 17..2170 | 10770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:58:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-RA | 2391 | CG4568-RA | 74..2227 | 17..2170 | 10770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23201808..23203961 | 2170..17 | 10770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:58:18 has no hits.
BO16773.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:52 Download gff for
BO16773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 1..2157 | 17..2173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:21 Download gff for
BO16773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 68..2235 | 7..2178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:53:45 Download gff for
BO16773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 74..2227 | 17..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:52 Download gff for
BO16773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 68..2235 | 7..2178 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:31 Download gff for
BO16773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fzo-RA | 74..2227 | 17..2172 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:31 Download gff for
BO16773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23201804..23203961 | 17..2172 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:53:45 Download gff for
BO16773.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19027526..19029683 | 17..2172 | 99 | | Minus |
BO16773.pep Sequence
Translation from 16 to 2188
> BO16773.pep
MAESDSGESTSSVSSFISSSSSSRLSEFVDAKTELQDIYHDLSNYLSNFL
TILEETVLLKDRQMLEHLCAFSSRVEAIAKVLSRDRMKVAFFGRTSNGKS
AVINALLHEKILPSAMGHTTSCFCQVQANGSNETEHVKVEQEDEHMELSA
LSQLASAHSPGALKPSTLLQVNMAKNRCSILDYDVVLMDTPGVDVTAQLD
DCLDSYCMDADVFILVLNAESTVSRVERQFFKDVASKLSRPNLFILNNRW
DKASSLEPEMEQKVKDQHMERCVNLLVDELGVYSTAQEAWERIYHVSALE
ALHIRNGQITNPSGQTQQRYQEFLRFENDFSNCLAVSALKTKFGPHLLSA
QKILNQLKSTLICPFIEKVSRLIDENKERRANLNAEIEDWLILMQEDREA
LQYCFEELTEMTQRVGRCVLNDQIKTLIPSSVLSFSQPFHPEFPAQIGQY
QRSLCAHLDKLLEDRVLQCLSIPLQRKILDIEKEIGLPIAENSCDWQLIY
GLDCQSYMSDFQPDLRFRFSLGFTALWHRLEGNLPLHASPFRIQKLQNGH
KKCSPLPPLVNGNHWQMLESLVKSKGSLGTVLLSAMAIRSFNWPIVLILG
GLVGSFYIYEYAAWTTAAQERSFKSQYARLLQQRLRSDVQQTVSGFELQL
RQHLATVRNCWEAQSNETLNDLNVRTAELTKQIQSMEVLQLSLKKFRDKG
QLLASRLGDFQETYLTKSASFLDH
BO16773.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fzo-PA | 718 | CG4568-PA | 1..718 | 1..718 | 3680 | 100 | Plus |
| Marf-PC | 810 | CG3869-PC | 62..808 | 14..716 | 1024 | 34.7 | Plus |
| Marf-PB | 810 | CG3869-PB | 62..808 | 14..716 | 1024 | 34.7 | Plus |
| Marf-PD | 814 | CG3869-PD | 62..812 | 14..716 | 1014 | 34.6 | Plus |
