Clone Sequence Records
BO16775.3prime Sequence
293 bp (293 high quality bases) assembled on 2006-10-13
> BO16775.3prime
ATGGTCTAGAAAGCTTGCTCGTCGCTTCTTCTTCTCCAGCTTACGAATCT
TGTGCAGGCGCGTCCGGACCGGCTCGCCCTCCCGCTCCGTCACTTCGCCG
GACTCCGGATTACTTTGGCCATCCGGGTTATTCTCCATCAATACTGCGGC
CGAAATGCAAACGAACTGGAAGAGAGCACCCACATAAAGCCCGTATCGGA
TTAGCAAGCTGAAGATGTCCTCGTCGCCGTACTTGTCCAGGGCTGCGGCG
GCGCCCAGACTGTCCGCGGAAGCCGACATGTCGACTGATAACT
BO16775.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-PA | 264 | CG4101-RA | 1..261 | 279..19 | 1305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-RA | 465 | CG4101-RA | 91..351 | 279..19 | 1305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16612576..16612836 | 279..19 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:10:22 has no hits.
BO16775.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:15 Download gff for
BO16775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-PA | 1..264 | 18..279 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:18:54 Download gff for
BO16775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..351 | 19..287 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:02:00 Download gff for
BO16775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..351 | 19..287 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:02:00 Download gff for
BO16775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16612571..16612836 | 19..287 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:18:54 Download gff for
BO16775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16605671..16605936 | 19..287 | 98 | | Minus |
BO16775.5prime Sequence
293 bp (293 high quality bases) assembled on 2006-10-13
> BO16775.5prime
GAAGTTATCAGTCGACATGTCGGCTTCCGCGGACAGTCTGGGCGCCGCCG
CAGCCCTGGACAAGTACGGCGACGAGGACATCTTCAGCTTGCTAATCCGA
TACGGGCTTTATGTGGGTGCTCTCTTCCAGTTCGTTTGCATTTCGGCCGC
AGTATTGATGGAGAATAACCCGGATGGCCAAAGTAATCCGGAGTCCGGCG
AAGTGACGGAGCGGGAGGGCGAGCCGGTCCGGACGCGCCTGCACAAGATT
CGTAAGCTGGAGAAGAAGAAGCGACGAGCAAGCTTTCTAGACC
BO16775.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-PA | 264 | CG4101-RA | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 09:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-RA | 465 | CG4101-RA | 91..351 | 17..277 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 09:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16612576..16612836 | 17..277 | 1305 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 09:54:32 has no hits.
BO16775.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:17 Download gff for
BO16775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-PA | 1..264 | 17..278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:29:44 Download gff for
BO16775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..351 | 9..277 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:39:53 Download gff for
BO16775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..351 | 9..277 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:39:53 Download gff for
BO16775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16612571..16612836 | 9..277 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:29:44 Download gff for
BO16775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16605671..16605936 | 9..277 | 98 | | Plus |
BO16775.complete Sequence
295 bp assembled on 2007-10-17
GenBank Submission: FJ633912
> BO16775.complete
GAAGTTATCAGTCGACATGTCGGCTTCCGCGGACAGTCTGGGCGCCGCCG
CAGCCCTGGACAAGTACGGCGACGAGGACATCTTCAGCTTGCTAATCCGA
TACGGGCTTTATGTGGGTGCTCTCTTCCAGTTCGTTTGCATTTCGGCCGC
AGTATTGATGGAGAATAACCCGGATGGCCAAAGTAATCCGGAGTCCGGCG
AAGTGACGGAGCGGGAGGGCGAGCCGGTCCGGACGCGCCTGCACAAGATT
CGTAAGCTGGAGAAGAAGAAGCGACGAGCAAGCTTTCTAGACCAT
BO16775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-RA | 264 | CG4101-PA | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-RA | 465 | CG4101-RA | 91..351 | 17..277 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16612576..16612836 | 17..277 | 1305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:05:26 has no hits.
BO16775.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:17 Download gff for
BO16775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 1..264 | 17..278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:55 Download gff for
BO16775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 86..351 | 9..277 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:49 Download gff for
BO16775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 91..351 | 17..279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:18 Download gff for
BO16775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 91..351 | 17..279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:41 Download gff for
BO16775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4101-RA | 91..351 | 17..279 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:41 Download gff for
BO16775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16612576..16612836 | 17..279 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:49 Download gff for
BO16775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16605676..16605936 | 17..279 | 99 | | Plus |
BO16775.pep Sequence
Translation from 16 to 295
> BO16775.pep
MSASADSLGAAAALDKYGDEDIFSLLIRYGLYVGALFQFVCISAAVLMEN
NPDGQSNPESGEVTEREGEPVRTRLHKIRKLEKKKRRASFLDH
BO16775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4101-PA | 87 | CG4101-PA | 1..87 | 1..87 | 438 | 100 | Plus |
