Clone BO16778 Report

Search the DGRC for BO16778

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG11592-RA
Protein status:BO16778.pep: Imported from assembly
Sequenced Size:1549

Clone Sequence Records

BO16778.3prime Sequence

738 bp (697 high quality bases) assembled on 2006-10-13

> BO16778.3prime
ATGGTCTAGAAAGCTTGCGATGGTCTCCTCGTCGGTGTCCGCCTCGCAGG
TTTCCAAATTGATTTCCGTAAGCTCCTGTTCATCCACCACACTTCTGGCG
TCCAGATCACCAGTCTCCATTTTGGGGACACTCAGGATTTCATCCTGCTC
CTGCGACTCCTTGGCAGCCTCCTCCAAAGCTCCTCCCTGCTCAAACATCG
GATTGTCAAAGGCTCGCTCCCTCACCTCGCCACTTTCCGGATCGTAAGCC
ATAATTCCCAGACGATCCACACCAGAAGCTCCTCCTTCACTGGATCCACC
CTCTGCGCCACCATTGTCGAAGCGGTTAAACAGCAGATTCCGGCGCAGTC
TCAATCCCAAGTGACGCCACCTCCAAAGACGGGGGTCGTGGATCCACTGT
GGTATGCGGTTTAGGTAGGGGTTCTCAGGCATAAAGTGCGCCAAAATGAC
CACAGAAACCAGACCCACCAGTGCCATGCAGAAAAGGATGAGAACAATCG
AGGAGAAGCTAACATTCGGATTATAGGGTCGACCAGAAACTTTTAACGTT
GTTCCTGTCTTGTTCCAATTGTGTTCGTTTTGCTGTAGAAACTCCAAGCT
CCGTTCACTATATTTATGGCGATCAGTTACCACCGCCTGCAGGCAGTTTC
CAAACTTCTGGGAGCCCACAAACTCCACGTGTAGGCCGATCTGATCCTTC
AGGCTCTCCTGGCTGATGAGGTTACTTATCTGGGCCAC

BO16778.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11592-PA 1518 CG11592-RA 796..1515 738..19 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
Amnionless-RB 1893 CG11592-RB 1021..1740 738..19 3600 100 Minus
Amnionless-RA 1681 CG11592-RA 809..1528 738..19 3600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 19:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 287405..288124 19..738 3600 100 Plus
Blast to na_te.dros performed on 2015-01-30 19:14:02 has no hits.

BO16778.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:20 Download gff for BO16778.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11592-PA 796..1518 15..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:32:52 Download gff for BO16778.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11592-RA 809..1533 11..738 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:49:22 Download gff for BO16778.3prime
Subject Subject Range Query Range Percent Splice Strand
Amnionless-RA 809..1533 11..738 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:49:22 Download gff for BO16778.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 287400..288124 11..738 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:32:52 Download gff for BO16778.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 287400..288124 11..738 99   Plus

BO16778.5prime Sequence

731 bp (618 high quality bases) assembled on 2006-10-13

> BO16778.5prime
GAAGTTATCACTCGACATGGGTTTGCATTGGCAATGGCTGATCTGGGCAT
TGGTGGGGCTCCATGTGGCACTGGCCACCAAGTGGTATGGCGGTGGAATG
GACTTCAATGATCCCACCGCCTGGCTAGATGACCACTTGCCTTGTGCACA
GGATTTGGTCGTTTTTCCAGAGTACTACCCAGCTCTGCTGCCCTTGCCCG
AGGACATATCCATTGATGGCTTGGTTTTCCCCAGAGAAGGGGCGATCCTT
TTGGCAGAGGAATCCACCATTACCTTTGGATCTGATAAGCAGCCCTCCTG
TGAGAGCGATGAGAATAAGGCCTATTTGAAGCCACCGAAGTCGAGTAAAT
GGTTCGATCCTGGCACCTGGACGGACAAATCTAAGGAATTTTCCACATTC
ACACCAGAGCTGGAGAGGATTCCCTGTGATGACGAGCAGGTCATAATCAA
GGGGCACGGACCATTGGCCTTTGACCTAGAAAACGTGCAGTATCTGAGGC
TGGGACAGCTTATTCTGGCTGGTTCTTCCATTTCCAAAACGTACTTGGAG
CAACTTATCAGCAGAGATCTGGGCCAGTTTCTCTTTTACAATGCCGAGTA
CGTCCAGGTGGAGTACTACAGAGGAGAGCTGTGTGGCTGCCACAAGGACT
TCGAGCGACTGCTGGAACCCGTTTGCCATAATGTCCAGGAGCAGTGCGAG
ACGCCCCACTGCTTGTCTCCAGTTCGACCCT

BO16778.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11592-PA 1518 CG11592-RA 1..715 17..731 3575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
Amnionless-RB 1893 CG11592-RB 226..940 17..731 3575 100 Plus
Amnionless-RA 1681 CG11592-RA 14..728 17..731 3575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 288205..288919 731..17 3575 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:24:37 has no hits.

BO16778.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:20 Download gff for BO16778.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11592-PA 1..715 17..731 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:33:33 Download gff for BO16778.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11592-RA 8..728 8..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:39:18 Download gff for BO16778.5prime
Subject Subject Range Query Range Percent Splice Strand
Amnionless-RA 8..728 8..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:39:18 Download gff for BO16778.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 288205..288925 8..731 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:33:33 Download gff for BO16778.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 288205..288925 8..731 99   Minus

BO16778.complete Sequence

1549 bp assembled on 2008-08-14

GenBank Submission: FJ633914

> BO16778.complete
GAAGTTATCACTCGACATGGGTTTGCATTGGCAATGGCTGATCTGGGCAT
TGGTGGGGCTCCATGTGGCACTGGCCACCAAGTGGTATGGCGGTGGAATG
GACTTCAATGATCCCACCGCCTGGCTAGATGACCACTTGCCTTGTGCACA
GGATTTGGTCGTTTTTCCAGAGTACTACCCAGCTCTGCTGCCCTTGCCCG
AGGACATATCCATTGATGGCTTGGTTTTCCCCAGAGAAGGGGCGATCCTT
TTGGCAGAGGAATCCACCATTACCTTTGGATCTGATAAGCAGCCCTCCTG
TGAGAGCGATGAGAATAAGGCCTATTTGAAGCCACCGAAGTCGAGTAAAT
GGTTCGATCCTGGCACCTGGACGGACAAATCTAAGGAATTTTCCACATTC
ACACCAGAGCTGGAGAGGATTCCCTGTGATGACGAGCAGGTCATAATCAA
GGGGCACGGACCATTGGCCTTTGACCTAGAAAACGTGCAGTATCTGAGGC
TGGGACAGCTTATTCTGGCTGGTTCTTCCATTTCCAAAACGTACTTGGAG
CAACTTATCAGCAGAGATCTGGGCCAGTTTCTCTTTTACAATGCCGAGTA
CGTCCAGGTGGAGTACTACAGAGGAGAGCTGTGTGGCTGCCACAAGGACT
TCGAGCGACTGCTGGAACCCGTTTGCCATAATGTCCAGGAGCAGTGCGAG
ACGCCCCACTGCTTGTCTCCAGTTCGACCCTTGGGATCGTGCTGCCTAAT
CTGCGGGGCCATTCTATCCACGCCCACGACCCACTGCACCGAGGGCAGTA
GAAAGGAGTTGGTGGCCCAGATAAGTAACCTCATCAGCCAGGAGAGCCTG
AAGGATCAGATCGGCCTACACGTGGAGTTTGTGGGCTCCCAGAAGTTTGG
AAACTGCCTGCAGGCGGTGGTAACTGATCGCCATAAATATAGTGAACGGA
GCTTGGAGTTTCTACAGCAAAACGAACACAATTGGAACAAGACAGGAACA
ACGTTAAAAGTTTCTGGTCGACCCTATAATCCGAATGTTAGCTTCTCCTC
GATTGTTCTCATCCTTTTCTGCATGGCACTGGTGGGTCTGGTTTCTGTGG
TCATTTTGGCGCACTTTATGCCTGAGAACCCCTACCTAAACCGCATACCA
CAGTGGATCCACGACCCCCGTCTTTGGAGGTGGCGTCACTTGGGATTGAG
ACTGCGCCGGAATCTGCTGTTTAACCGCTTCGACAATGGTGGCGCAGAGG
GTGGATCCAGTGAAGGAGGAGCTTCTGGTGTGGATCGTCTGGGAATTATG
GCTTACGATCCGGAAAGTGGCGAGGTGAGGGAGCGAGCCTTTGACAATCC
GATGTTTGAGCAGGGAGGAGCTTTGGAGGAGGCTGCCAAGGAGTCGCAGG
AGCAGGATGAAATCCTGAGTGTCCCCAAAATGGAGACTGGTGATCTGGAC
GCCAGAAGTGTGGTGGATGAACAGGAGCTTACGGAAATCAATTTGGAAAC
CTGCGAGGCGGACACCGACGAGGAGACCATCGCAAGCTTTCTAGACCAT

BO16778.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Amnionless-RB 1518 CG11592-PB 1..1515 17..1531 7575 100 Plus
Amnionless-RA 1518 CG11592-PA 1..1515 17..1531 7575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
Amnionless-RB 1893 CG11592-RB 226..1740 17..1531 7575 100 Plus
Amnionless-RA 1681 CG11592-RA 14..1528 17..1531 7575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 287405..288919 1531..17 7575 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:48:07 has no hits.

BO16778.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:59 Download gff for BO16778.complete
Subject Subject Range Query Range Percent Splice Strand
CG11592-RA 1..1520 17..1539 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:29 Download gff for BO16778.complete
Subject Subject Range Query Range Percent Splice Strand
CG11592-RA 14..1528 17..1533 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:55 Download gff for BO16778.complete
Subject Subject Range Query Range Percent Splice Strand
CG11592-RA 1..1515 17..1533 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:35 Download gff for BO16778.complete
Subject Subject Range Query Range Percent Splice Strand
Amnionless-RA 14..1528 17..1533 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:35 Download gff for BO16778.complete
Subject Subject Range Query Range Percent Splice Strand
2L 287403..288919 17..1533 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:29 Download gff for BO16778.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 287403..288919 17..1533 99   Minus

BO16778.pep Sequence

Translation from 16 to 1549

> BO16778.pep
MGLHWQWLIWALVGLHVALATKWYGGGMDFNDPTAWLDDHLPCAQDLVVF
PEYYPALLPLPEDISIDGLVFPREGAILLAEESTITFGSDKQPSCESDEN
KAYLKPPKSSKWFDPGTWTDKSKEFSTFTPELERIPCDDEQVIIKGHGPL
AFDLENVQYLRLGQLILAGSSISKTYLEQLISRDLGQFLFYNAEYVQVEY
YRGELCGCHKDFERLLEPVCHNVQEQCETPHCLSPVRPLGSCCLICGAIL
STPTTHCTEGSRKELVAQISNLISQESLKDQIGLHVEFVGSQKFGNCLQA
VVTDRHKYSERSLEFLQQNEHNWNKTGTTLKVSGRPYNPNVSFSSIVLIL
FCMALVGLVSVVILAHFMPENPYLNRIPQWIHDPRLWRWRHLGLRLRRNL
LFNRFDNGGAEGGSSEGGASGVDRLGIMAYDPESGEVRERAFDNPMFEQG
GALEEAAKESQEQDEILSVPKMETGDLDARSVVDEQELTEINLETCEADT
DEETIASFLDH

BO16778.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
Amnionless-PB 505 CG11592-PB 1..505 1..505 2710 100 Plus
Amnionless-PA 505 CG11592-PA 1..505 1..505 2710 100 Plus