Clone Sequence Records
BO16778.3prime Sequence
738 bp (697 high quality bases) assembled on 2006-10-13
> BO16778.3prime
ATGGTCTAGAAAGCTTGCGATGGTCTCCTCGTCGGTGTCCGCCTCGCAGG
TTTCCAAATTGATTTCCGTAAGCTCCTGTTCATCCACCACACTTCTGGCG
TCCAGATCACCAGTCTCCATTTTGGGGACACTCAGGATTTCATCCTGCTC
CTGCGACTCCTTGGCAGCCTCCTCCAAAGCTCCTCCCTGCTCAAACATCG
GATTGTCAAAGGCTCGCTCCCTCACCTCGCCACTTTCCGGATCGTAAGCC
ATAATTCCCAGACGATCCACACCAGAAGCTCCTCCTTCACTGGATCCACC
CTCTGCGCCACCATTGTCGAAGCGGTTAAACAGCAGATTCCGGCGCAGTC
TCAATCCCAAGTGACGCCACCTCCAAAGACGGGGGTCGTGGATCCACTGT
GGTATGCGGTTTAGGTAGGGGTTCTCAGGCATAAAGTGCGCCAAAATGAC
CACAGAAACCAGACCCACCAGTGCCATGCAGAAAAGGATGAGAACAATCG
AGGAGAAGCTAACATTCGGATTATAGGGTCGACCAGAAACTTTTAACGTT
GTTCCTGTCTTGTTCCAATTGTGTTCGTTTTGCTGTAGAAACTCCAAGCT
CCGTTCACTATATTTATGGCGATCAGTTACCACCGCCTGCAGGCAGTTTC
CAAACTTCTGGGAGCCCACAAACTCCACGTGTAGGCCGATCTGATCCTTC
AGGCTCTCCTGGCTGATGAGGTTACTTATCTGGGCCAC
BO16778.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11592-PA | 1518 | CG11592-RA | 796..1515 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amnionless-RB | 1893 | CG11592-RB | 1021..1740 | 738..19 | 3600 | 100 | Minus |
Amnionless-RA | 1681 | CG11592-RA | 809..1528 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 19:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 287405..288124 | 19..738 | 3600 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 19:14:02 has no hits.
BO16778.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:20 Download gff for
BO16778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11592-PA | 796..1518 | 15..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:32:52 Download gff for
BO16778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11592-RA | 809..1533 | 11..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:49:22 Download gff for
BO16778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amnionless-RA | 809..1533 | 11..738 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:49:22 Download gff for
BO16778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 287400..288124 | 11..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:32:52 Download gff for
BO16778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 287400..288124 | 11..738 | 99 | | Plus |
BO16778.5prime Sequence
731 bp (618 high quality bases) assembled on 2006-10-13
> BO16778.5prime
GAAGTTATCACTCGACATGGGTTTGCATTGGCAATGGCTGATCTGGGCAT
TGGTGGGGCTCCATGTGGCACTGGCCACCAAGTGGTATGGCGGTGGAATG
GACTTCAATGATCCCACCGCCTGGCTAGATGACCACTTGCCTTGTGCACA
GGATTTGGTCGTTTTTCCAGAGTACTACCCAGCTCTGCTGCCCTTGCCCG
AGGACATATCCATTGATGGCTTGGTTTTCCCCAGAGAAGGGGCGATCCTT
TTGGCAGAGGAATCCACCATTACCTTTGGATCTGATAAGCAGCCCTCCTG
TGAGAGCGATGAGAATAAGGCCTATTTGAAGCCACCGAAGTCGAGTAAAT
GGTTCGATCCTGGCACCTGGACGGACAAATCTAAGGAATTTTCCACATTC
ACACCAGAGCTGGAGAGGATTCCCTGTGATGACGAGCAGGTCATAATCAA
GGGGCACGGACCATTGGCCTTTGACCTAGAAAACGTGCAGTATCTGAGGC
TGGGACAGCTTATTCTGGCTGGTTCTTCCATTTCCAAAACGTACTTGGAG
CAACTTATCAGCAGAGATCTGGGCCAGTTTCTCTTTTACAATGCCGAGTA
CGTCCAGGTGGAGTACTACAGAGGAGAGCTGTGTGGCTGCCACAAGGACT
TCGAGCGACTGCTGGAACCCGTTTGCCATAATGTCCAGGAGCAGTGCGAG
ACGCCCCACTGCTTGTCTCCAGTTCGACCCT
BO16778.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11592-PA | 1518 | CG11592-RA | 1..715 | 17..731 | 3575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amnionless-RB | 1893 | CG11592-RB | 226..940 | 17..731 | 3575 | 100 | Plus |
Amnionless-RA | 1681 | CG11592-RA | 14..728 | 17..731 | 3575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 288205..288919 | 731..17 | 3575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:24:37 has no hits.
BO16778.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:20 Download gff for
BO16778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11592-PA | 1..715 | 17..731 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:33:33 Download gff for
BO16778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11592-RA | 8..728 | 8..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:39:18 Download gff for
BO16778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amnionless-RA | 8..728 | 8..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:39:18 Download gff for
BO16778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 288205..288925 | 8..731 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:33:33 Download gff for
BO16778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 288205..288925 | 8..731 | 99 | | Minus |
BO16778.complete Sequence
1549 bp assembled on 2008-08-14
GenBank Submission: FJ633914
> BO16778.complete
GAAGTTATCACTCGACATGGGTTTGCATTGGCAATGGCTGATCTGGGCAT
TGGTGGGGCTCCATGTGGCACTGGCCACCAAGTGGTATGGCGGTGGAATG
GACTTCAATGATCCCACCGCCTGGCTAGATGACCACTTGCCTTGTGCACA
GGATTTGGTCGTTTTTCCAGAGTACTACCCAGCTCTGCTGCCCTTGCCCG
AGGACATATCCATTGATGGCTTGGTTTTCCCCAGAGAAGGGGCGATCCTT
TTGGCAGAGGAATCCACCATTACCTTTGGATCTGATAAGCAGCCCTCCTG
TGAGAGCGATGAGAATAAGGCCTATTTGAAGCCACCGAAGTCGAGTAAAT
GGTTCGATCCTGGCACCTGGACGGACAAATCTAAGGAATTTTCCACATTC
ACACCAGAGCTGGAGAGGATTCCCTGTGATGACGAGCAGGTCATAATCAA
GGGGCACGGACCATTGGCCTTTGACCTAGAAAACGTGCAGTATCTGAGGC
TGGGACAGCTTATTCTGGCTGGTTCTTCCATTTCCAAAACGTACTTGGAG
CAACTTATCAGCAGAGATCTGGGCCAGTTTCTCTTTTACAATGCCGAGTA
CGTCCAGGTGGAGTACTACAGAGGAGAGCTGTGTGGCTGCCACAAGGACT
TCGAGCGACTGCTGGAACCCGTTTGCCATAATGTCCAGGAGCAGTGCGAG
ACGCCCCACTGCTTGTCTCCAGTTCGACCCTTGGGATCGTGCTGCCTAAT
CTGCGGGGCCATTCTATCCACGCCCACGACCCACTGCACCGAGGGCAGTA
GAAAGGAGTTGGTGGCCCAGATAAGTAACCTCATCAGCCAGGAGAGCCTG
AAGGATCAGATCGGCCTACACGTGGAGTTTGTGGGCTCCCAGAAGTTTGG
AAACTGCCTGCAGGCGGTGGTAACTGATCGCCATAAATATAGTGAACGGA
GCTTGGAGTTTCTACAGCAAAACGAACACAATTGGAACAAGACAGGAACA
ACGTTAAAAGTTTCTGGTCGACCCTATAATCCGAATGTTAGCTTCTCCTC
GATTGTTCTCATCCTTTTCTGCATGGCACTGGTGGGTCTGGTTTCTGTGG
TCATTTTGGCGCACTTTATGCCTGAGAACCCCTACCTAAACCGCATACCA
CAGTGGATCCACGACCCCCGTCTTTGGAGGTGGCGTCACTTGGGATTGAG
ACTGCGCCGGAATCTGCTGTTTAACCGCTTCGACAATGGTGGCGCAGAGG
GTGGATCCAGTGAAGGAGGAGCTTCTGGTGTGGATCGTCTGGGAATTATG
GCTTACGATCCGGAAAGTGGCGAGGTGAGGGAGCGAGCCTTTGACAATCC
GATGTTTGAGCAGGGAGGAGCTTTGGAGGAGGCTGCCAAGGAGTCGCAGG
AGCAGGATGAAATCCTGAGTGTCCCCAAAATGGAGACTGGTGATCTGGAC
GCCAGAAGTGTGGTGGATGAACAGGAGCTTACGGAAATCAATTTGGAAAC
CTGCGAGGCGGACACCGACGAGGAGACCATCGCAAGCTTTCTAGACCAT
BO16778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amnionless-RB | 1518 | CG11592-PB | 1..1515 | 17..1531 | 7575 | 100 | Plus |
Amnionless-RA | 1518 | CG11592-PA | 1..1515 | 17..1531 | 7575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amnionless-RB | 1893 | CG11592-RB | 226..1740 | 17..1531 | 7575 | 100 | Plus |
Amnionless-RA | 1681 | CG11592-RA | 14..1528 | 17..1531 | 7575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 287405..288919 | 1531..17 | 7575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:48:07 has no hits.
BO16778.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:59 Download gff for
BO16778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11592-RA | 1..1520 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:29 Download gff for
BO16778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11592-RA | 14..1528 | 17..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:55 Download gff for
BO16778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11592-RA | 1..1515 | 17..1533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:35 Download gff for
BO16778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Amnionless-RA | 14..1528 | 17..1533 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:35 Download gff for
BO16778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 287403..288919 | 17..1533 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:29 Download gff for
BO16778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 287403..288919 | 17..1533 | 99 | | Minus |
BO16778.pep Sequence
Translation from 16 to 1549
> BO16778.pep
MGLHWQWLIWALVGLHVALATKWYGGGMDFNDPTAWLDDHLPCAQDLVVF
PEYYPALLPLPEDISIDGLVFPREGAILLAEESTITFGSDKQPSCESDEN
KAYLKPPKSSKWFDPGTWTDKSKEFSTFTPELERIPCDDEQVIIKGHGPL
AFDLENVQYLRLGQLILAGSSISKTYLEQLISRDLGQFLFYNAEYVQVEY
YRGELCGCHKDFERLLEPVCHNVQEQCETPHCLSPVRPLGSCCLICGAIL
STPTTHCTEGSRKELVAQISNLISQESLKDQIGLHVEFVGSQKFGNCLQA
VVTDRHKYSERSLEFLQQNEHNWNKTGTTLKVSGRPYNPNVSFSSIVLIL
FCMALVGLVSVVILAHFMPENPYLNRIPQWIHDPRLWRWRHLGLRLRRNL
LFNRFDNGGAEGGSSEGGASGVDRLGIMAYDPESGEVRERAFDNPMFEQG
GALEEAAKESQEQDEILSVPKMETGDLDARSVVDEQELTEINLETCEADT
DEETIASFLDH
BO16778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Amnionless-PB | 505 | CG11592-PB | 1..505 | 1..505 | 2710 | 100 | Plus |
Amnionless-PA | 505 | CG11592-PA | 1..505 | 1..505 | 2710 | 100 | Plus |