Clone BO16779 Report

Search the DGRC for BO16779

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG12589-RA
Protein status:BO16779.pep: validated full length
Sequenced Size:322

Clone Sequence Records

BO16779.3prime Sequence

320 bp (320 high quality bases) assembled on 2006-10-13

> BO16779.3prime
ATGGTCTAGAAAGCTTGCCAGTGCCCAGTGGCGTCCGTGTTTCACCTGCA
AGCTCAGCAGGAGTCGCTGTAACCGCTCCTTTCCCTCGTATAAGCTTCTT
TGCTTGTCCAGCCGAAGGGTCACCAGGCGGCGCTGTAGGTGAGTCAGCTG
CTCCCGGATCCACACGTGGTTCGCCTGCAGGCGCAGCACCATCGCTACCA
AATTCTCAGGCTGACCCACTTTCTCCAATTCTCCGTGCTCATCCATGTCC
TCGCCGAAGTCCAGTTCCATATCTATGCCTGCGACGGCTGTGGAATGCGC
GTCCATGTCGACTGATAACT

BO16779.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-PA 291 CG12589-RA 1..288 306..19 1440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-RC 1814 CG12589-RC 1394..1681 306..19 1440 100 Minus
CG12589-RB 471 CG12589-RB 51..338 306..19 1440 100 Minus
CG12589-RA 517 CG12589-RA 97..384 306..19 1440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5137190..5137477 19..306 1440 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:46:15 has no hits.

BO16779.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:22 Download gff for BO16779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-PA 1..291 18..306 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:03 Download gff for BO16779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 85..384 19..316 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:56 Download gff for BO16779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 85..384 19..316 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:56 Download gff for BO16779.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5137190..5137489 19..316 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:03 Download gff for BO16779.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 962912..963211 19..316 99   Plus

BO16779.5prime Sequence

320 bp (320 high quality bases) assembled on 2006-10-13

> BO16779.5prime
GAAGTTATCACTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAG
ATATGGAACTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAG
AAAGTGGGTCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGC
GAACCACGTGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGG
TGACCCTTCGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGG
TTACAGCGACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGC
ACTGGCAAGCTTTCTAGACC

BO16779.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-PA 291 CG12589-RA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-RC 1814 CG12589-RC 1394..1681 17..304 1440 100 Plus
CG12589-RB 471 CG12589-RB 51..338 17..304 1440 100 Plus
CG12589-RA 517 CG12589-RA 97..384 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5137190..5137477 304..17 1440 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:22:02 has no hits.

BO16779.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:22 Download gff for BO16779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-PA 1..291 17..305 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:35 Download gff for BO16779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 85..384 7..304 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:04 Download gff for BO16779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 85..384 7..304 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:04 Download gff for BO16779.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5137190..5137489 7..304 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:35 Download gff for BO16779.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 962912..963211 7..304 98   Minus

BO16779.complete Sequence

322 bp assembled on 2006-10-11

GenBank Submission: FJ633915

> BO16779.complete
GAAGTTATCAGTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAG
ATATGGAACTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAG
AAAGTGGGTCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGC
GAACCACGTGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGG
TGACCCTTCGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGG
TTACAGCGACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGC
ACTGGCAAGCTTTCTAGACCAT

BO16779.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-RC 291 CG12589-PC 1..288 17..304 1440 100 Plus
CG12589-RB 291 CG12589-PB 1..288 17..304 1440 100 Plus
CG12589-RA 291 CG12589-PA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-RC 1814 CG12589-RC 1394..1681 17..304 1440 100 Plus
CG12589-RB 471 CG12589-RB 51..338 17..304 1440 100 Plus
CG12589-RA 517 CG12589-RA 97..384 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5137190..5137477 304..17 1440 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:07:17 has no hits.

BO16779.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:11 Download gff for BO16779.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 1..291 17..305 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:57 Download gff for BO16779.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 1..291 17..305 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:22:46 Download gff for BO16779.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 97..384 17..306 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:11 Download gff for BO16779.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 1..291 17..305 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:14 Download gff for BO16779.complete
Subject Subject Range Query Range Percent Splice Strand
CG12589-RA 97..384 17..306 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:14 Download gff for BO16779.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5137188..5137477 17..306 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:22:46 Download gff for BO16779.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 962910..963199 17..306 99   Minus

BO16779.pep Sequence

Translation from 16 to 322

> BO16779.pep
MDAHSTAVAGIDMELDFGEDMDEHGELEKVGQPENLVAMVLRLQANHVWI
REQLTHLQRRLVTLRLDKQRSLYEGKERLQRLLLSLQVKHGRHWALASFL
DH

BO16779.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12589-PC 96 CG12589-PC 1..96 1..96 494 100 Plus
CG12589-PB 96 CG12589-PB 1..96 1..96 494 100 Plus
CG12589-PA 96 CG12589-PA 1..96 1..96 494 100 Plus