Clone Sequence Records
BO16779.3prime Sequence
320 bp (320 high quality bases) assembled on 2006-10-13
> BO16779.3prime
ATGGTCTAGAAAGCTTGCCAGTGCCCAGTGGCGTCCGTGTTTCACCTGCA
AGCTCAGCAGGAGTCGCTGTAACCGCTCCTTTCCCTCGTATAAGCTTCTT
TGCTTGTCCAGCCGAAGGGTCACCAGGCGGCGCTGTAGGTGAGTCAGCTG
CTCCCGGATCCACACGTGGTTCGCCTGCAGGCGCAGCACCATCGCTACCA
AATTCTCAGGCTGACCCACTTTCTCCAATTCTCCGTGCTCATCCATGTCC
TCGCCGAAGTCCAGTTCCATATCTATGCCTGCGACGGCTGTGGAATGCGC
GTCCATGTCGACTGATAACT
BO16779.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-PA | 291 | CG12589-RA | 1..288 | 306..19 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:46:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-RC | 1814 | CG12589-RC | 1394..1681 | 306..19 | 1440 | 100 | Minus |
CG12589-RB | 471 | CG12589-RB | 51..338 | 306..19 | 1440 | 100 | Minus |
CG12589-RA | 517 | CG12589-RA | 97..384 | 306..19 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5137190..5137477 | 19..306 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:46:15 has no hits.
BO16779.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:22 Download gff for
BO16779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-PA | 1..291 | 18..306 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:03 Download gff for
BO16779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 85..384 | 19..316 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:56 Download gff for
BO16779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 85..384 | 19..316 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:56 Download gff for
BO16779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5137190..5137489 | 19..316 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:03 Download gff for
BO16779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 962912..963211 | 19..316 | 99 | | Plus |
BO16779.5prime Sequence
320 bp (320 high quality bases) assembled on 2006-10-13
> BO16779.5prime
GAAGTTATCACTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAG
ATATGGAACTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAG
AAAGTGGGTCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGC
GAACCACGTGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGG
TGACCCTTCGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGG
TTACAGCGACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGC
ACTGGCAAGCTTTCTAGACC
BO16779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-PA | 291 | CG12589-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-RC | 1814 | CG12589-RC | 1394..1681 | 17..304 | 1440 | 100 | Plus |
CG12589-RB | 471 | CG12589-RB | 51..338 | 17..304 | 1440 | 100 | Plus |
CG12589-RA | 517 | CG12589-RA | 97..384 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5137190..5137477 | 304..17 | 1440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:22:02 has no hits.
BO16779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:22 Download gff for
BO16779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-PA | 1..291 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:35 Download gff for
BO16779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 85..384 | 7..304 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:04 Download gff for
BO16779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 85..384 | 7..304 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:04 Download gff for
BO16779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5137190..5137489 | 7..304 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:35 Download gff for
BO16779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 962912..963211 | 7..304 | 98 | | Minus |
BO16779.complete Sequence
322 bp assembled on 2006-10-11
GenBank Submission: FJ633915
> BO16779.complete
GAAGTTATCAGTCGACATGGACGCGCATTCCACAGCCGTCGCAGGCATAG
ATATGGAACTGGACTTCGGCGAGGACATGGATGAGCACGGAGAATTGGAG
AAAGTGGGTCAGCCTGAGAATTTGGTAGCGATGGTGCTGCGCCTGCAGGC
GAACCACGTGTGGATCCGGGAGCAGCTGACTCACCTACAGCGCCGCCTGG
TGACCCTTCGGCTGGACAAGCAAAGAAGCTTATACGAGGGAAAGGAGCGG
TTACAGCGACTCCTGCTGAGCTTGCAGGTGAAACACGGACGCCACTGGGC
ACTGGCAAGCTTTCTAGACCAT
BO16779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-RC | 291 | CG12589-PC | 1..288 | 17..304 | 1440 | 100 | Plus |
CG12589-RB | 291 | CG12589-PB | 1..288 | 17..304 | 1440 | 100 | Plus |
CG12589-RA | 291 | CG12589-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-RC | 1814 | CG12589-RC | 1394..1681 | 17..304 | 1440 | 100 | Plus |
CG12589-RB | 471 | CG12589-RB | 51..338 | 17..304 | 1440 | 100 | Plus |
CG12589-RA | 517 | CG12589-RA | 97..384 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5137190..5137477 | 304..17 | 1440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:07:17 has no hits.
BO16779.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:11 Download gff for
BO16779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 1..291 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:57 Download gff for
BO16779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 1..291 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:22:46 Download gff for
BO16779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 97..384 | 17..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:11 Download gff for
BO16779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 1..291 | 17..305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:14 Download gff for
BO16779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12589-RA | 97..384 | 17..306 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:14 Download gff for
BO16779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5137188..5137477 | 17..306 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:22:46 Download gff for
BO16779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 962910..963199 | 17..306 | 99 | | Minus |
BO16779.pep Sequence
Translation from 16 to 322
> BO16779.pep
MDAHSTAVAGIDMELDFGEDMDEHGELEKVGQPENLVAMVLRLQANHVWI
REQLTHLQRRLVTLRLDKQRSLYEGKERLQRLLLSLQVKHGRHWALASFL
DH
BO16779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12589-PC | 96 | CG12589-PC | 1..96 | 1..96 | 494 | 100 | Plus |
CG12589-PB | 96 | CG12589-PB | 1..96 | 1..96 | 494 | 100 | Plus |
CG12589-PA | 96 | CG12589-PA | 1..96 | 1..96 | 494 | 100 | Plus |