Clone Sequence Records
BO16783.3prime Sequence
584 bp (584 high quality bases) assembled on 2006-10-13
> BO16783.3prime
ATGGTCTAGAAAGCTTGCACCGTCAAAACCCTTGGAAAATTTTATGTTGT
TCTGGTCGCAGAAGTTCTTCAGATCCATGAAATTGCTATAGGGAATGTTA
TCCTTGGCACTCTGCCTTTTGTTAAAATGCTTTTCATCTTCGACTATATG
ATGGAAGTCCTGGTTCAGTTTGTGACCCTTGCAGATGGTGAACTCGGCCT
CGTCAAAAAGCTTTCGTCTCATCTCAAACGTTGGTTCGGTTGTAGTATTG
GATGCCACTTGTGGTTCTGAGGACGCCTTTCTTTCGGAGATGACAATCGA
TAAGTCGCTTAATTCAGATCGGAGCAGACTATCCGTCTCCAACTTGGCCG
TTAGTGCCGCCGTATCTAATTTCTTTTGTTTTTGCGGAAATGGCGTTCCA
GAACCCTTGGAACTTTTCAATCCATAATCGCGATTGGTGGTCGTGCGATC
GTCATACTCGCTGGGGTTCCTATAAAAACCAAGGTGAATGGGAAATCCCT
TAGCCGCGGTTTTGGCCTTCTTCATATTGGATGGGTTAGTGTTTTGCAGA
CTTTTGAAGTTCTTATGCATGTCGACTGATAACT
BO16783.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14719-PA | 555 | I-t-RA | 1..552 | 570..19 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-RA | 887 | CG14719-RA | 44..595 | 570..19 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11704073..11704624 | 570..19 | 2760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:38 has no hits.
BO16783.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:27 Download gff for
BO16783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14719-PA | 1..555 | 18..570 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:17 Download gff for
BO16783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 40..604 | 8..578 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:34 Download gff for
BO16783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 40..604 | 8..578 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:34 Download gff for
BO16783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11704069..11704633 | 8..578 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:17 Download gff for
BO16783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7529791..7530355 | 8..578 | 98 | | Minus |
BO16783.5prime Sequence
585 bp (585 high quality bases) assembled on 2006-10-13
> BO16783.5prime
GAAGTTATCACCTTGACATGCATAAGAACTTCAAAAGTCTGCAAAACACT
AACCCATCCAATATGAAGAAGGCCAAAACCGCGGCTAAGGGATTTCCCAT
TCACCTTGGTTTTTATAGGAACCCCAGCGAGTATGACGATCGCACGACCA
CCAATCGCGATTATGGATTGAAAAGTTCCAAGGGTTCTGGAACGCCATTT
CCGCAAAAACAAAAGAAATTAGATACGGCGGCACTAACGGCCAAGTTGGA
GACGGATAGTCTGCTCCGATCTGAATTAAGCGACTTATCGATTGTCATCT
CCGAAAGAAAGGCGTCCTCAGAACCACAAGTGGCATCCAATACTACAACC
GAACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAGTTCAC
CATCTGCAAGGGTCACAAACTGAACCAGGACTTCCATCATATAGTCGAAG
ATGAAAAGCATTTTAACAAAAGGCAGAGTGCCAAGGATAACATTCCCTAT
AGCAATTTCATGGATCTGAAGAACTTCTGCGACCAGAACAACATAAAATT
TTCCAAGGGTTTTGACGGTGCAAGCTTTCTAGACC
BO16783.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14719-PA | 555 | I-t-RA | 1..552 | 18..569 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-RA | 887 | CG14719-RA | 44..595 | 18..569 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11704073..11704624 | 18..569 | 2760 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:08:53 has no hits.
BO16783.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:28 Download gff for
BO16783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14719-PA | 1..555 | 18..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:53 Download gff for
BO16783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 44..604 | 18..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:27 Download gff for
BO16783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 44..604 | 18..580 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:27 Download gff for
BO16783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11704073..11704633 | 18..580 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:53 Download gff for
BO16783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7529795..7530355 | 18..580 | 99 | | Plus |
BO16783.complete Sequence
586 bp assembled on 2006-10-11
GenBank Submission: FJ633917
> BO16783.complete
GAAGTTATCAGTCGACATGCATAAGAACTTCAAAAGTCTGCAAAACACTA
ACCCATCCAATATGAAGAAGGCCAAAACCGCGGCTAAGGGATTTCCCATT
CACCTTGGTTTTTATAGGAACCCCAGCGAGTATGACGATCGCACGACCAC
CAATCGCGATTATGGATTGAAAAGTTCCAAGGGTTCTGGAACGCCATTTC
CGCAAAAACAAAAGAAATTAGATACGGCGGCACTAACGGCCAAGTTGGAG
ACGGATAGTCTGCTCCGATCTGAATTAAGCGACTTATCGATTGTCATCTC
CGAAAGAAAGGCGTCCTCAGAACCACAAGTGGCATCCAATACTACAACCG
AACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAGTTCACC
ATCTGCAAGGGTCACAAACTGAACCAGGACTTCCATCATATAGTCGAAGA
TGAAAAGCATTTTAACAAAAGGCAGAGTGCCAAGGATAACATTCCCTATA
GCAATTTCATGGATCTGAAGAACTTCTGCGACCAGAACAACATAAAATTT
TCCAAGGGTTTTGACGGTGCAAGCTTTCTAGACCAT
BO16783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-RA | 555 | CG14719-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-RA | 887 | CG14719-RA | 44..595 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11704073..11704624 | 17..568 | 2760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:55:36 has no hits.
BO16783.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:47 Download gff for
BO16783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 1..555 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:04 Download gff for
BO16783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 446..1010 | 9..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:47 Download gff for
BO16783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 44..595 | 17..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:47 Download gff for
BO16783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 446..1010 | 9..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:57 Download gff for
BO16783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
I-t-RA | 44..595 | 17..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:57 Download gff for
BO16783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11704073..11704624 | 17..570 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:47 Download gff for
BO16783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7529795..7530346 | 17..570 | 99 | | Plus |
BO16783.pep Sequence
Translation from 16 to 586
> BO16783.pep
MHKNFKSLQNTNPSNMKKAKTAAKGFPIHLGFYRNPSEYDDRTTTNRDYG
LKSSKGSGTPFPQKQKKLDTAALTAKLETDSLLRSELSDLSIVISERKAS
SEPQVASNTTTEPTFEMRRKLFDEAEFTICKGHKLNQDFHHIVEDEKHFN
KRQSAKDNIPYSNFMDLKNFCDQNNIKFSKGFDGASFLDH
BO16783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-t-PA | 184 | CG14719-PA | 1..184 | 1..184 | 968 | 100 | Plus |
CG5509-PA | 139 | CG5509-PA | 23..139 | 47..180 | 167 | 32.8 | Plus |