Clone BO16783 Report

Search the DGRC for BO16783

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptI-t-RA
Protein status:BO16783.pep: validated full length
Sequenced Size:586

Clone Sequence Records

BO16783.3prime Sequence

584 bp (584 high quality bases) assembled on 2006-10-13

> BO16783.3prime
ATGGTCTAGAAAGCTTGCACCGTCAAAACCCTTGGAAAATTTTATGTTGT
TCTGGTCGCAGAAGTTCTTCAGATCCATGAAATTGCTATAGGGAATGTTA
TCCTTGGCACTCTGCCTTTTGTTAAAATGCTTTTCATCTTCGACTATATG
ATGGAAGTCCTGGTTCAGTTTGTGACCCTTGCAGATGGTGAACTCGGCCT
CGTCAAAAAGCTTTCGTCTCATCTCAAACGTTGGTTCGGTTGTAGTATTG
GATGCCACTTGTGGTTCTGAGGACGCCTTTCTTTCGGAGATGACAATCGA
TAAGTCGCTTAATTCAGATCGGAGCAGACTATCCGTCTCCAACTTGGCCG
TTAGTGCCGCCGTATCTAATTTCTTTTGTTTTTGCGGAAATGGCGTTCCA
GAACCCTTGGAACTTTTCAATCCATAATCGCGATTGGTGGTCGTGCGATC
GTCATACTCGCTGGGGTTCCTATAAAAACCAAGGTGAATGGGAAATCCCT
TAGCCGCGGTTTTGGCCTTCTTCATATTGGATGGGTTAGTGTTTTGCAGA
CTTTTGAAGTTCTTATGCATGTCGACTGATAACT

BO16783.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14719-PA 555 I-t-RA 1..552 570..19 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-RA 887 CG14719-RA 44..595 570..19 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11704073..11704624 570..19 2760 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:53:38 has no hits.

BO16783.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:27 Download gff for BO16783.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14719-PA 1..555 18..570 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:17 Download gff for BO16783.3prime
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 40..604 8..578 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:34 Download gff for BO16783.3prime
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 40..604 8..578 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:34 Download gff for BO16783.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11704069..11704633 8..578 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:17 Download gff for BO16783.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7529791..7530355 8..578 98   Minus

BO16783.5prime Sequence

585 bp (585 high quality bases) assembled on 2006-10-13

> BO16783.5prime
GAAGTTATCACCTTGACATGCATAAGAACTTCAAAAGTCTGCAAAACACT
AACCCATCCAATATGAAGAAGGCCAAAACCGCGGCTAAGGGATTTCCCAT
TCACCTTGGTTTTTATAGGAACCCCAGCGAGTATGACGATCGCACGACCA
CCAATCGCGATTATGGATTGAAAAGTTCCAAGGGTTCTGGAACGCCATTT
CCGCAAAAACAAAAGAAATTAGATACGGCGGCACTAACGGCCAAGTTGGA
GACGGATAGTCTGCTCCGATCTGAATTAAGCGACTTATCGATTGTCATCT
CCGAAAGAAAGGCGTCCTCAGAACCACAAGTGGCATCCAATACTACAACC
GAACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAGTTCAC
CATCTGCAAGGGTCACAAACTGAACCAGGACTTCCATCATATAGTCGAAG
ATGAAAAGCATTTTAACAAAAGGCAGAGTGCCAAGGATAACATTCCCTAT
AGCAATTTCATGGATCTGAAGAACTTCTGCGACCAGAACAACATAAAATT
TTCCAAGGGTTTTGACGGTGCAAGCTTTCTAGACC

BO16783.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14719-PA 555 I-t-RA 1..552 18..569 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-RA 887 CG14719-RA 44..595 18..569 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11704073..11704624 18..569 2760 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:08:53 has no hits.

BO16783.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:28 Download gff for BO16783.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14719-PA 1..555 18..570 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:53 Download gff for BO16783.5prime
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 44..604 18..580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:27 Download gff for BO16783.5prime
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 44..604 18..580 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:27 Download gff for BO16783.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11704073..11704633 18..580 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:53 Download gff for BO16783.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7529795..7530355 18..580 99   Plus

BO16783.complete Sequence

586 bp assembled on 2006-10-11

GenBank Submission: FJ633917

> BO16783.complete
GAAGTTATCAGTCGACATGCATAAGAACTTCAAAAGTCTGCAAAACACTA
ACCCATCCAATATGAAGAAGGCCAAAACCGCGGCTAAGGGATTTCCCATT
CACCTTGGTTTTTATAGGAACCCCAGCGAGTATGACGATCGCACGACCAC
CAATCGCGATTATGGATTGAAAAGTTCCAAGGGTTCTGGAACGCCATTTC
CGCAAAAACAAAAGAAATTAGATACGGCGGCACTAACGGCCAAGTTGGAG
ACGGATAGTCTGCTCCGATCTGAATTAAGCGACTTATCGATTGTCATCTC
CGAAAGAAAGGCGTCCTCAGAACCACAAGTGGCATCCAATACTACAACCG
AACCAACGTTTGAGATGAGACGAAAGCTTTTTGACGAGGCCGAGTTCACC
ATCTGCAAGGGTCACAAACTGAACCAGGACTTCCATCATATAGTCGAAGA
TGAAAAGCATTTTAACAAAAGGCAGAGTGCCAAGGATAACATTCCCTATA
GCAATTTCATGGATCTGAAGAACTTCTGCGACCAGAACAACATAAAATTT
TCCAAGGGTTTTGACGGTGCAAGCTTTCTAGACCAT

BO16783.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-RA 555 CG14719-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-RA 887 CG14719-RA 44..595 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11704073..11704624 17..568 2760 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:55:36 has no hits.

BO16783.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:47 Download gff for BO16783.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 1..555 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:04 Download gff for BO16783.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 446..1010 9..579 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:47 Download gff for BO16783.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 44..595 17..570 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:47 Download gff for BO16783.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 446..1010 9..579 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:57 Download gff for BO16783.complete
Subject Subject Range Query Range Percent Splice Strand
I-t-RA 44..595 17..570 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:57 Download gff for BO16783.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11704073..11704624 17..570 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:47 Download gff for BO16783.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7529795..7530346 17..570 99   Plus

BO16783.pep Sequence

Translation from 16 to 586

> BO16783.pep
MHKNFKSLQNTNPSNMKKAKTAAKGFPIHLGFYRNPSEYDDRTTTNRDYG
LKSSKGSGTPFPQKQKKLDTAALTAKLETDSLLRSELSDLSIVISERKAS
SEPQVASNTTTEPTFEMRRKLFDEAEFTICKGHKLNQDFHHIVEDEKHFN
KRQSAKDNIPYSNFMDLKNFCDQNNIKFSKGFDGASFLDH

BO16783.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
I-t-PA 184 CG14719-PA 1..184 1..184 968 100 Plus
CG5509-PA 139 CG5509-PA 23..139 47..180 167 32.8 Plus