Clone Sequence Records
BO16785.3prime Sequence
320 bp (320 high quality bases) assembled on 2006-10-13
> BO16785.3prime
ATGGTCTAGAAAGCTTGCAGGATGCATGGCATTTAGGGCGAGTGGAATGG
ACATGGCGGGCTGGACCATTCGCTCACTCTCCATTTCCAATTTACGTTCC
AAGATGTCCTCTCGCCCAATGTCGATGTCTATCGGCTGCCAGTGATGGTA
GCTTTCGATCCTCGAGGACAATGGAAAAGTGCTGCACACGGTCGTCAAAC
TGGAGTTTTTGGTCAGGTCATGGTTGTACTGCTCCTCGCTGCTCGTGGTT
ACCTCGTCGAGATCCTTATCCACATCCTGCGCCTGCAACTGTTGCTTGAC
ATCCATGTCGACTGATAACT
BO16785.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11666-PA | 291 | CG11666-RA | 1..288 | 306..19 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:17:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11666-RA | 561 | CG11666-RA | 36..323 | 306..19 | 1440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20984721..20985008 | 306..19 | 1440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:17:51 has no hits.
BO16785.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:29 Download gff for
BO16785.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-PA | 1..291 | 15..306 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:25:53 Download gff for
BO16785.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 32..326 | 15..314 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:35:22 Download gff for
BO16785.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 32..326 | 15..314 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:35:22 Download gff for
BO16785.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20984717..20985011 | 15..314 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:25:53 Download gff for
BO16785.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20855744..20856038 | 15..314 | 98 | | Minus |
BO16785.5prime Sequence
320 bp (320 high quality bases) assembled on 2006-10-13
> BO16785.5prime
GAAGTTATCCGTCGACATGGATGTCAAGCAACAGTTGCAGGCGCAGGATG
TGGATAAGGATCTCGACGAGGTAACCACGAGCAGCGAGGAGCAGTACAAC
CATGACCTGACCAAAAACTCCAGTTTGACGACCGTGTGCAGCACTTTTCC
ATTGTCCTCGAGGATCGAAAGCTACCATCACTGGCAGCCGATAGACATCG
ACATTGGGCGAGAGGACATCTTGGAACGTAAATTGGAAATGGAGAGTGAG
CGAATGGTCCAGCCCGCCATGTCCATTCCACTCGCCCTAAATGCCATGCA
TCCTGCAAGCTTTCTAGACC
BO16785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11666-PA | 291 | CG11666-RA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11666-RA | 561 | CG11666-RA | 36..323 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20984721..20985008 | 17..304 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 13:09:10 has no hits.
BO16785.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:29 Download gff for
BO16785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-PA | 1..291 | 17..308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:17:24 Download gff for
BO16785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 36..326 | 17..308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:45:35 Download gff for
BO16785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 36..326 | 17..308 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:45:35 Download gff for
BO16785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20984721..20985011 | 17..308 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:17:24 Download gff for
BO16785.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20855748..20856038 | 17..308 | 99 | | Plus |
BO16785.complete Sequence
322 bp assembled on 2007-10-17
GenBank Submission: FJ633918
> BO16785.complete
GAAGTTATCAGTCGACATGGATGTCAAGCAACAGTTGCAGGCGCAGGATG
TGGATAAGGATCTCGACGAGGTAACCACGAGCAGCGAGGAGCAGTACAAC
CATGACCTGACCAAAAACTCCAGTTTGACGACCGTGTGCAGCACTTTTCC
ATTGTCCTCGAGGATCGAAAGCTACCATCACTGGCAGCCGATAGACATCG
ACATTGGGCGAGAGGACATCTTGGAACGTAAATTGGAAATGGAGAGTGAG
CGAATGGTCCAGCCCGCCATGTCCATTCCACTCGCCCTAAATGCCATGCA
TCCTGCAAGCTTTCTAGACCAT
BO16785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11666-RA | 291 | CG11666-PA | 1..288 | 17..304 | 1440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11666-RA | 561 | CG11666-RA | 36..323 | 17..304 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20984721..20985008 | 17..304 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:03 has no hits.
BO16785.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:20 Download gff for
BO16785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 1..291 | 17..308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:56 Download gff for
BO16785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 32..326 | 9..308 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:30 Download gff for
BO16785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 36..323 | 17..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:30 Download gff for
BO16785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 36..323 | 17..306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:18 Download gff for
BO16785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11666-RA | 36..323 | 17..306 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:18 Download gff for
BO16785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20984721..20985008 | 17..306 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:30 Download gff for
BO16785.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20855748..20856035 | 17..306 | 99 | | Plus |
BO16785.pep Sequence
Translation from 16 to 322
> BO16785.pep
MDVKQQLQAQDVDKDLDEVTTSSEEQYNHDLTKNSSLTTVCSTFPLSSRI
ESYHHWQPIDIDIGREDILERKLEMESERMVQPAMSIPLALNAMHPASFL
DH
BO16785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11666-PA | 96 | CG11666-PA | 1..96 | 1..96 | 496 | 100 | Plus |
