Clone Sequence Records
BO16786.3prime Sequence
287 bp (287 high quality bases) assembled on 2006-10-13
> BO16786.3prime
ATGGTCTAGAAAGCTTGCATCCTCTAGCTTTTCTGGTGGTGGCCCACATG
GCTGCAGCATTCGCTCCATCAGATTAAATCGCACTCGTGCCTTCGATTCA
TTTTCCGCTATGGCAAAGTAGTTGAGAATATCGTAGTGACCCATGTAGCT
GGCCAAGGAGTCGCGATGTTGATTTGTTAGCCACTCGAACTTTGTGGTAT
CCGCGTGTCCTGTTCCGATGTACTTGCTTTGTAGATGCTCCAGCTGGCTG
TGGATATTGTAGCGTTCACCCATGTCGACTGATAACT
BO16786.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-PA | 258 | CG11985-RA | 1..255 | 273..19 | 1275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 370 | CG11985-RA | 78..332 | 273..19 | 1275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9015010..9015264 | 19..273 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:06:08 has no hits.
BO16786.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:30 Download gff for
BO16786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-PA | 1..258 | 15..273 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:12 Download gff for
BO16786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 69..336 | 14..285 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:27 Download gff for
BO16786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 69..336 | 14..285 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:27 Download gff for
BO16786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9015006..9015273 | 14..285 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:12 Download gff for
BO16786.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4840728..4840995 | 14..285 | 97 | | Plus |
BO16786.5prime Sequence
287 bp (287 high quality bases) assembled on 2006-10-13
> BO16786.5prime
GAAGTTATCAGTCGACATGGGTGAACGCTACAATATCCACAGCCAGCTGG
AGCATCTACAAAGCAAGTACATCGGAACAGGACACGCGGATACCACAAAG
TTCGAGTGGCTAACAAATCAACATCGCGACTCCTTGGCCAGCTACATGGG
TCACTACGATATTCTCAACTACTTTGCCATAGCGGAAAATGAATCGAAGG
CACGAGTGCGATTTAATCTGATGGAGCGAATGCTGCAGCCATGTGGGCCA
CCACCAGAAAAGCTAGAGGATGCAAGCTTTCTAGACC
BO16786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-PA | 258 | CG11985-RA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 370 | CG11985-RA | 78..332 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9015010..9015264 | 271..17 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:35:59 has no hits.
BO16786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:31 Download gff for
BO16786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-PA | 1..258 | 17..275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:26 Download gff for
BO16786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 69..336 | 5..276 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:49 Download gff for
BO16786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 69..336 | 5..276 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:49 Download gff for
BO16786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9015006..9015273 | 5..276 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:26 Download gff for
BO16786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4840728..4840995 | 5..276 | 97 | | Minus |
BO16786.complete Sequence
289 bp assembled on 2006-10-11
GenBank Submission: FJ633919
> BO16786.complete
GAAGTTATCAGTCGACATGGGTGAACGCTACAATATCCACAGCCAGCTGG
AGCATCTACAAAGCAAGTACATCGGAACAGGACACGCGGATACCACAAAG
TTCGAGTGGCTAACAAATCAACATCGCGACTCCTTGGCCAGCTACATGGG
TCACTACGATATTCTCAACTACTTTGCCATAGCGGAAAATGAATCGAAGG
CACGAGTGCGATTTAATCTGATGGAGCGAATGCTGCAGCCATGTGGGCCA
CCACCAGAAAAGCTAGAGGATGCAAGCTTTCTAGACCAT
BO16786.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 258 | CG11985-PA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-RA | 370 | CG11985-RA | 78..332 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9015010..9015264 | 271..17 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:53:08 has no hits.
BO16786.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:54 Download gff for
BO16786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 1..258 | 17..275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:33 Download gff for
BO16786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 1..258 | 17..275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:25 Download gff for
BO16786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 78..332 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:54 Download gff for
BO16786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 1..258 | 17..275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:53 Download gff for
BO16786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11985-RA | 78..332 | 17..273 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:53 Download gff for
BO16786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9015008..9015264 | 17..273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:25 Download gff for
BO16786.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4840730..4840986 | 17..273 | 99 | | Minus |
BO16786.pep Sequence
Translation from 16 to 289
> BO16786.pep
MGERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDIL
NYFAIAENESKARVRFNLMERMLQPCGPPPEKLEDASFLDH
BO16786.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11985-PA | 85 | CG11985-PA | 1..85 | 1..85 | 462 | 100 | Plus |
