Clone BO16789 Report

Search the DGRC for BO16789

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:167
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG14957-RA
Protein status:BO16789.pep: validated full length
Sequenced Size:322

Clone Sequence Records

BO16789.3prime Sequence

320 bp (320 high quality bases) assembled on 2006-10-13

> BO16789.3prime
ATGGTCTAGAAAGCTTGCGACACATCCCGCTGGTTTGCTGATAGTGCAGA
ATTTGAGATCGGCATCAAAGAATTGCCCGGTCTTGCAGCTTTTGATTAGA
GCCCTCGTTGAGTCATTGACTTTATAACAATAGACGTAGCTGACGCATGT
GGAGTCATTCTGGTTCGCTATTATGACCGATTTATCCACATTCTGACACG
CCTCATCCGCACTCCAGGTGCCCGCGTCCAGATCCTTTAGCGCAGGCGCG
GCCCCGGCAAGCAGGCAGTGGACCAGGAGCAGTGATACAATTAGACTCGT
CCACATGTCGACTGATAACT

BO16789.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-PA 291 CG14957-RA 1..288 306..19 1440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-RA 423 CG14957-RA 17..304 306..19 1440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3187668..3187808 280..140 705 100 Minus
3L 28110227 3L 3187863..3187987 143..19 625 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:32:07 has no hits.

BO16789.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:34 Download gff for BO16789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-PA 1..291 15..306 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:26 Download gff for BO16789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 15..319 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:57 Download gff for BO16789.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 15..319 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:57 Download gff for BO16789.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3187669..3187808 140..279 100 -> Minus
3L 3187867..3187990 15..139 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:26 Download gff for BO16789.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3187669..3187808 140..279 100 -> Minus
arm_3L 3187867..3187990 15..139 98   Minus

BO16789.5prime Sequence

320 bp (320 high quality bases) assembled on 2006-10-13

> BO16789.5prime
GAAGTTATCAGTCGACATGTGGACGAGTCTAATTGTATCACTGCTCCTGG
TCCACTGCCTGCTTGCCGGGGCCGCGCCTGCGCTAAAGGATCTGGACGCG
GGCACCTGGAGTGCGGATGAGGCGTGTCAGAATGTGGATAAATCGGTCAT
AATAGCGAACCAGAATGACTCCACATGCGTCAGCTACGTCTATTGTTATA
AAGTCAATGACTCAACGAGGGCTCTAATCAAAAGCTGCAAGACCGGGCAA
TTCTTTGATGCCGATCTCAAATTCTGCACTATCAGCAAACCAGCGGGATG
TGTCGCAAGCTTTCTAGACC

BO16789.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-PA 291 CG14957-RA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-RA 423 CG14957-RA 17..304 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3187668..3187808 43..183 705 100 Plus
3L 28110227 3L 3187863..3187987 180..304 625 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:22:36 has no hits.

BO16789.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:35 Download gff for BO16789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-PA 1..291 17..308 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:39 Download gff for BO16789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 4..308 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:09 Download gff for BO16789.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 4..308 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:09 Download gff for BO16789.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3187867..3187990 184..308 98   Plus
3L 3187669..3187808 44..183 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:39 Download gff for BO16789.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3187867..3187990 184..308 98   Plus
arm_3L 3187669..3187808 44..183 100 -> Plus

BO16789.complete Sequence

322 bp assembled on 2006-10-11

GenBank Submission: FJ633921

> BO16789.complete
GAAGTTATCAGTCGACATGTGGACGAGTCTAATTGTATCACTGCTCCTGG
TCCACTGCCTGCTTGCCGGGGCCGCGCCTGCGCTAAAGGATCTGGACGCG
GGCACCTGGAGTGCGGATGAGGCGTGTCAGAATGTGGATAAATCGGTCAT
AATAGCGAACCAGAATGACTCCACATGCGTCAGCTACGTCTATTGTTATA
AAGTCAATGACTCAACGAGGGCTCTAATCAAAAGCTGCAAGACCGGGCAA
TTCTTTGATGCCGATCTCAAATTCTGCACTATCAGCAAACCAGCGGGATG
TGTCGCAAGCTTTCTAGACCAT

BO16789.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-RA 291 CG14957-PA 1..288 17..304 1440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-RA 423 CG14957-RA 17..304 17..304 1440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3187668..3187808 43..183 705 100 Plus
3L 28110227 3L 3187863..3187987 180..304 625 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:43:33 has no hits.

BO16789.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:18 Download gff for BO16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 1..291 17..308 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:08 Download gff for BO16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 4..308 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:19 Download gff for BO16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 17..304 17..306 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:19 Download gff for BO16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 5..307 4..308 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:34 Download gff for BO16789.complete
Subject Subject Range Query Range Percent Splice Strand
CG14957-RA 17..304 17..306 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:34 Download gff for BO16789.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3187867..3187987 184..306 98   Plus
3L 3187579..3187605 17..43 100 -> Plus
3L 3187669..3187808 44..183 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:19 Download gff for BO16789.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3187867..3187987 184..306 98   Plus
arm_3L 3187579..3187605 17..43 100 -> Plus
arm_3L 3187669..3187808 44..183 100 -> Plus

BO16789.pep Sequence

Translation from 16 to 322

> BO16789.pep
MWTSLIVSLLLVHCLLAGAAPALKDLDAGTWSADEACQNVDKSVIIANQN
DSTCVSYVYCYKVNDSTRALIKSCKTGQFFDADLKFCTISKPAGCVASFL
DH

BO16789.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14957-PA 96 CG14957-PA 1..96 1..96 509 100 Plus
CG32284-PA 102 CG32284-PA 1..97 1..97 256 50.5 Plus
CG42494-PC 283 CG42494-PC 215..282 28..95 204 51.5 Plus
CG42494-PB 283 CG42494-PB 215..282 28..95 204 51.5 Plus
CG42494-PA 283 CG42494-PA 215..282 28..95 204 51.5 Plus
CG42494-PC 283 CG42494-PC 123..189 31..96 160 40.3 Plus
CG42494-PB 283 CG42494-PB 123..189 31..96 160 40.3 Plus