Clone Sequence Records
BO16790.3prime Sequence
287 bp (287 high quality bases) assembled on 2006-10-13
> BO16790.3prime
ATGGTCTAGAAAGCTTGCCATGATGACACACAGGCCACACTCCTCCATGA
CACAACAGGCTCCTAGCAGCATGCAGCACTCGGCGTCACTGGGTCCTTGG
GGGGGTCCTGGCTGATTGTAGCTGGGTTGCTCCACCACAACCACCGGCTG
GTTGTAAACGGGCGAGGGCATTATCACCTCTACGGGGGGCGGGGGTCCAA
TAACATTCACCACCTCCACGGGCGGCTGATAGTAGGGATCGATCACGTCC
ACCTGGTAGCCTGCGTTGTACATGTCGACTGATAACT
BO16790.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15127-PA | 258 | CG15127-RA | 1..255 | 273..19 | 1275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15127-RA | 624 | CG15127-RA | 116..370 | 273..19 | 1275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19681022..19681276 | 19..273 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:09:00 has no hits.
BO16790.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:36 Download gff for
BO16790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-PA | 1..258 | 18..273 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:56 Download gff for
BO16790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 110..376 | 11..280 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:29 Download gff for
BO16790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 110..376 | 11..280 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:29 Download gff for
BO16790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19681016..19681282 | 11..280 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:56 Download gff for
BO16790.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15568521..15568787 | 11..280 | 97 | | Plus |
BO16790.5prime Sequence
287 bp (287 high quality bases) assembled on 2006-10-13
> BO16790.5prime
GAAGTTATCAGTCGACATGTACAACGCAGGCTACCAGGTGGACGTGATCG
ATCCCTACTATCAGCCGCCCGTGGAGGTGGTGAATGTTATTGGACCCCCG
CCCCCCGTAGAGGTGATAATGCCCTCGCCCGTTTACAACCAGCCGGTGGT
TGTGGTGGAGCAACCCAGCTACAATCAGCCAGGACCCCCCCAAGGACCCA
GTGACGCCGAGTGCTGCATGCTGCTAGGAGCCTGTTGTGTCATGGAGGAG
TGTGGCCTGTGTGTCATCATGGCAAGCTTTCTAGACC
BO16790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15127-PA | 258 | CG15127-RA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15127-RA | 624 | CG15127-RA | 116..370 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19681022..19681276 | 271..17 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:37:08 has no hits.
BO16790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:36 Download gff for
BO16790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-PA | 1..258 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:39 Download gff for
BO16790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 110..376 | 10..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:00 Download gff for
BO16790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 110..376 | 10..279 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:00 Download gff for
BO16790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19681016..19681282 | 10..279 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:39 Download gff for
BO16790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15568521..15568787 | 10..279 | 97 | | Minus |
BO16790.complete Sequence
289 bp assembled on 2006-10-11
GenBank Submission: FJ633922
> BO16790.complete
GAAGTTATCAGTCGACATGTACAACGCAGGCTACCAGGTGGACGTGATCG
ATCCCTACTATCAGCCGCCCGTGGAGGTGGTGAATGTTATTGGACCCCCG
CCCCCCGTAGAGGTGATAATGCCCTCGCCCGTTTACAACCAGCCGGTGGT
TGTGGTGGAGCAACCCAGCTACAATCAGCCAGGACCCCCCCAAGGACCCA
GTGACGCCGAGTGCTGCATGCTGCTAGGAGCCTGTTGTGTCATGGAGGAG
TGTGGCCTGTGTGTCATCATGGCAAGCTTTCTAGACCAT
BO16790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15127-RA | 258 | CG15127-PA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15127-RA | 624 | CG15127-RA | 116..370 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19681022..19681276 | 271..17 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:42:38 has no hits.
BO16790.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:56 Download gff for
BO16790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 1..258 | 17..272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:36 Download gff for
BO16790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 92..358 | 10..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:17 Download gff for
BO16790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 116..370 | 17..273 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:56 Download gff for
BO16790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 92..358 | 10..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:13 Download gff for
BO16790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15127-RA | 116..370 | 17..273 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:13 Download gff for
BO16790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19681020..19681276 | 17..273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:17 Download gff for
BO16790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15568525..15568781 | 17..273 | 99 | | Minus |
BO16790.pep Sequence
Translation from 16 to 289
> BO16790.pep
MYNAGYQVDVIDPYYQPPVEVVNVIGPPPPVEVIMPSPVYNQPVVVVEQP
SYNQPGPPQGPSDAECCMLLGACCVMEECGLCVIMASFLDH
BO16790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15127-PA | 85 | CG15127-PA | 1..85 | 1..85 | 476 | 100 | Plus |
