Clone BO16807 Report

Search the DGRC for BO16807

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG12725-RA
Protein status:BO16807.pep: validated full length
Sequenced Size:523

Clone Sequence Records

BO16807.5prime Sequence

521 bp (515 high quality bases) assembled on 2006-10-13

> BO16807.5prime
GAAGTTATCAGTCGACATGCGTAAGATGCAAGTTCTAGTTCAGACGAGCG
ACGGCAAGAAGACGGTTTACGATGTGGATCGCTTCGGAACGGTGGCCAAC
CTGAAGGCACGGATCGGGCGAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATG
TGGGCCATAAGTCCATTCTGGATCTCACCTGGAAGCCGGTCGTCCTGACG
CCCAAGCAATTGCGCGAAAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTA
TGGCAGGAAAAACGATAGTGGTGAACATATGTCTACATTGATCGGCGGTT
ACCAGCAACGCATAGATCTGGAAAGTGACGATGATGAACTGGAGGCACAG
GACTTGACTGAACTCGATTTGTTGTCCCTTAACTCCGATGATTCACTGGT
CAACAACCAGACGGAGCTAGAGCCGATTGCTCCATTGAATTTCTCTGGAT
CTGATGCAAGCTTTCTAGACC

BO16807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-PA 492 CG12725-RA 1..489 17..505 2445 100 Plus
CG33223-PA 555 CG33223-RA 22..183 38..199 535 93.2 Plus
CG32713-PA 555 CG32713-RA 22..183 38..199 510 92.5 Plus
CG33223-PA 555 CG33223-RA 205..237 218..250 165 100 Plus
CG32713-PA 555 CG32713-RA 205..237 218..250 165 100 Plus
CG33223-PA 555 CG33223-RA 251..292 279..320 135 92.8 Plus
CG32713-PA 555 CG32713-RA 251..292 279..320 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 1025 CG12725-RA 150..638 17..505 2445 100 Plus
CG33223-RB 689 CG33223-RB 67..396 17..361 900 85.1 Plus
CG33223-RA 1114 CG33223-RA 492..821 17..361 900 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13402226..13402714 505..17 2445 100 Minus
X 23542271 X 8465983..8466312 361..17 810 84.2 Minus
X 23542271 X 8457319..8457560 255..17 800 89.7 Minus
Blast to na_te.dros performed on 2015-02-03 06:37:37 has no hits.

BO16807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:54 Download gff for BO16807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-PA 1..492 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:45 Download gff for BO16807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..642 17..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:04 Download gff for BO16807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..642 17..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:04 Download gff for BO16807.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13402222..13402714 17..510 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:45 Download gff for BO16807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13296255..13296747 17..510 99   Minus

BO16807.3prime Sequence

521 bp (521 high quality bases) assembled on 2006-10-13

> BO16807.3prime
ATGGTCTAGAAAGCTTGCATCAGATCCAGAGAAATTCAATGGAGCAATCG
GCTCTAGCTCCGTCTGGTTGTTGACCAGTGAATCATCGGAGTTAAGGGAC
AACAAATCGAGTTCAGTCAAGTCCTGTGCCTCCAGTTCATCATCGTCACT
TTCCAGATCTATGCGTTGCTGGTAACCGCCGATCAATGTAGACATATGTT
CACCACTATCGTTTTTCCTGCCATAGCCGAACTTGCTAAACTTGCCAATC
TTCTTTTCGCGCAATTGCTTGGGCGTCAGGACGACCGGCTTCCAGGTGAG
ATCCAGAATGGACTTATGGCCCACATCCTCCAGTATGCTCTGATTGGACA
GCTCGCGACCCTTGTAGGACAGCCGACTGAAGCCCATGGGCACGGACATG
GCTCGCCCGATCCGTGCCTTCAGGTTGGCCACCGTTCCGAAGCGATCCAC
ATCGTAAACCGTCTTCTTGCCGTCGCTCGTCTGAACTAGAACTTGCATCT
TACGCATGTCGACTGATAACT

BO16807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-PA 492 CG12725-RA 1..489 507..19 2445 100 Minus
CG33223-PA 555 CG33223-RA 22..183 486..325 535 93.2 Minus
CG32713-PA 555 CG32713-RA 22..183 486..325 510 92.5 Minus
CG33223-PA 555 CG33223-RA 205..237 306..274 165 100 Minus
CG32713-PA 555 CG32713-RA 205..237 306..274 165 100 Minus
CG33223-PA 555 CG33223-RA 251..292 245..204 135 92.8 Minus
CG32713-PA 555 CG32713-RA 251..292 245..204 135 92.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 1025 CG12725-RA 150..638 507..19 2445 100 Minus
CG33223-RB 689 CG33223-RB 67..396 507..163 900 85.1 Minus
CG33223-RA 1114 CG33223-RA 492..821 507..163 900 85.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13402226..13402714 19..507 2445 100 Plus
X 23542271 X 8465983..8466312 163..507 810 84.2 Plus
X 23542271 X 8457319..8457560 269..507 800 89.7 Plus
Blast to na_te.dros performed on 2015-02-02 17:55:39 has no hits.

BO16807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:53 Download gff for BO16807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-PA 1..492 15..507 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:31 Download gff for BO16807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..642 14..507 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:20 Download gff for BO16807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..642 14..507 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:20 Download gff for BO16807.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13402222..13402714 14..507 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:31 Download gff for BO16807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13296255..13296747 14..507 99   Plus

BO16807.complete Sequence

523 bp assembled on 2006-10-11

GenBank Submission: FJ633925

> BO16807.complete
GAAGTTATCAGTCGACATGCGTAAGATGCAAGTTCTAGTTCAGACGAGCG
ACGGCAAGAAGACGGTTTACGATGTGGATCGCTTCGGAACGGTGGCCAAC
CTGAAGGCACGGATCGGGCGAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATG
TGGGCCATAAGTCCATTCTGGATCTCACCTGGAAGCCGGTCGTCCTGACG
CCCAAGCAATTGCGCGAAAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTA
TGGCAGGAAAAACGATAGTGGTGAACATATGTCTACATTGATCGGCGGTT
ACCAGCAACGCATAGATCTGGAAAGTGACGATGATGAACTGGAGGCACAG
GACTTGACTGAACTCGATTTGTTGTCCCTTAACTCCGATGATTCACTGGT
CAACAACCAGACGGAGCTAGAGCCGATTGCTCCATTGAATTTCTCTGGAT
CTGATGCAAGCTTTCTAGACCAT

BO16807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 492 CG12725-PA 1..489 17..505 2445 100 Plus
CG33223-RB 555 CG33223-PB 1..330 17..361 810 84.2 Plus
CG33223-RA 555 CG33223-PA 1..330 17..361 810 84.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-RA 1025 CG12725-RA 150..638 17..505 2445 100 Plus
CG33223-RB 689 CG33223-RB 67..396 17..361 810 84.2 Plus
CG33223-RA 1114 CG33223-RA 492..821 17..361 810 84.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13402226..13402714 505..17 2445 100 Minus
X 23542271 X 8465983..8466312 361..17 810 84.2 Minus
X 23542271 X 8457319..8457560 255..17 800 89.7 Minus
Blast to na_te.dros performed on 2014-11-27 20:39:57 has no hits.

BO16807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:19 Download gff for BO16807.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:27 Download gff for BO16807.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 17..509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:42 Download gff for BO16807.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..638 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:20 Download gff for BO16807.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 1..492 17..509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:54 Download gff for BO16807.complete
Subject Subject Range Query Range Percent Splice Strand
CG12725-RA 150..638 17..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:54 Download gff for BO16807.complete
Subject Subject Range Query Range Percent Splice Strand
X 13402224..13402714 17..507 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:42 Download gff for BO16807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13296257..13296747 17..507 99   Minus

BO16807.pep Sequence

Translation from 16 to 523

> BO16807.pep
MRKMQVLVQTSDGKKTVYDVDRFGTVANLKARIGRAMSVPMGFSRLSYKG
RELSNQSILEDVGHKSILDLTWKPVVLTPKQLREKKIGKFSKFGYGRKND
SGEHMSTLIGGYQQRIDLESDDDELEAQDLTELDLLSLNSDDSLVNNQTE
LEPIAPLNFSGSDASFLDH

BO16807.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12725-PA 163 CG12725-PA 1..163 1..163 827 100 Plus
CG33223-PB 184 CG33223-PB 1..178 1..162 461 60.3 Plus
CG33223-PA 184 CG33223-PA 1..178 1..162 461 60.3 Plus
CG32713-PB 184 CG32713-PB 1..178 1..162 461 60.3 Plus
CG32713-PA 184 CG32713-PA 1..178 1..162 461 60.3 Plus