Clone Sequence Records
BO16807.5prime Sequence
521 bp (515 high quality bases) assembled on 2006-10-13
> BO16807.5prime
GAAGTTATCAGTCGACATGCGTAAGATGCAAGTTCTAGTTCAGACGAGCG
ACGGCAAGAAGACGGTTTACGATGTGGATCGCTTCGGAACGGTGGCCAAC
CTGAAGGCACGGATCGGGCGAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATG
TGGGCCATAAGTCCATTCTGGATCTCACCTGGAAGCCGGTCGTCCTGACG
CCCAAGCAATTGCGCGAAAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTA
TGGCAGGAAAAACGATAGTGGTGAACATATGTCTACATTGATCGGCGGTT
ACCAGCAACGCATAGATCTGGAAAGTGACGATGATGAACTGGAGGCACAG
GACTTGACTGAACTCGATTTGTTGTCCCTTAACTCCGATGATTCACTGGT
CAACAACCAGACGGAGCTAGAGCCGATTGCTCCATTGAATTTCTCTGGAT
CTGATGCAAGCTTTCTAGACC
BO16807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-PA | 492 | CG12725-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG33223-PA | 555 | CG33223-RA | 22..183 | 38..199 | 535 | 93.2 | Plus |
CG32713-PA | 555 | CG32713-RA | 22..183 | 38..199 | 510 | 92.5 | Plus |
CG33223-PA | 555 | CG33223-RA | 205..237 | 218..250 | 165 | 100 | Plus |
CG32713-PA | 555 | CG32713-RA | 205..237 | 218..250 | 165 | 100 | Plus |
CG33223-PA | 555 | CG33223-RA | 251..292 | 279..320 | 135 | 92.8 | Plus |
CG32713-PA | 555 | CG32713-RA | 251..292 | 279..320 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-RA | 1025 | CG12725-RA | 150..638 | 17..505 | 2445 | 100 | Plus |
CG33223-RB | 689 | CG33223-RB | 67..396 | 17..361 | 900 | 85.1 | Plus |
CG33223-RA | 1114 | CG33223-RA | 492..821 | 17..361 | 900 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13402226..13402714 | 505..17 | 2445 | 100 | Minus |
X | 23542271 | X | 8465983..8466312 | 361..17 | 810 | 84.2 | Minus |
X | 23542271 | X | 8457319..8457560 | 255..17 | 800 | 89.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:37:37 has no hits.
BO16807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:54 Download gff for
BO16807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-PA | 1..492 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:45 Download gff for
BO16807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..642 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:04 Download gff for
BO16807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..642 | 17..510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:04 Download gff for
BO16807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13402222..13402714 | 17..510 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:45 Download gff for
BO16807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13296255..13296747 | 17..510 | 99 | | Minus |
BO16807.3prime Sequence
521 bp (521 high quality bases) assembled on 2006-10-13
> BO16807.3prime
ATGGTCTAGAAAGCTTGCATCAGATCCAGAGAAATTCAATGGAGCAATCG
GCTCTAGCTCCGTCTGGTTGTTGACCAGTGAATCATCGGAGTTAAGGGAC
AACAAATCGAGTTCAGTCAAGTCCTGTGCCTCCAGTTCATCATCGTCACT
TTCCAGATCTATGCGTTGCTGGTAACCGCCGATCAATGTAGACATATGTT
CACCACTATCGTTTTTCCTGCCATAGCCGAACTTGCTAAACTTGCCAATC
TTCTTTTCGCGCAATTGCTTGGGCGTCAGGACGACCGGCTTCCAGGTGAG
ATCCAGAATGGACTTATGGCCCACATCCTCCAGTATGCTCTGATTGGACA
GCTCGCGACCCTTGTAGGACAGCCGACTGAAGCCCATGGGCACGGACATG
GCTCGCCCGATCCGTGCCTTCAGGTTGGCCACCGTTCCGAAGCGATCCAC
ATCGTAAACCGTCTTCTTGCCGTCGCTCGTCTGAACTAGAACTTGCATCT
TACGCATGTCGACTGATAACT
BO16807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-PA | 492 | CG12725-RA | 1..489 | 507..19 | 2445 | 100 | Minus |
CG33223-PA | 555 | CG33223-RA | 22..183 | 486..325 | 535 | 93.2 | Minus |
CG32713-PA | 555 | CG32713-RA | 22..183 | 486..325 | 510 | 92.5 | Minus |
CG33223-PA | 555 | CG33223-RA | 205..237 | 306..274 | 165 | 100 | Minus |
CG32713-PA | 555 | CG32713-RA | 205..237 | 306..274 | 165 | 100 | Minus |
CG33223-PA | 555 | CG33223-RA | 251..292 | 245..204 | 135 | 92.8 | Minus |
CG32713-PA | 555 | CG32713-RA | 251..292 | 245..204 | 135 | 92.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-RA | 1025 | CG12725-RA | 150..638 | 507..19 | 2445 | 100 | Minus |
CG33223-RB | 689 | CG33223-RB | 67..396 | 507..163 | 900 | 85.1 | Minus |
CG33223-RA | 1114 | CG33223-RA | 492..821 | 507..163 | 900 | 85.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13402226..13402714 | 19..507 | 2445 | 100 | Plus |
X | 23542271 | X | 8465983..8466312 | 163..507 | 810 | 84.2 | Plus |
X | 23542271 | X | 8457319..8457560 | 269..507 | 800 | 89.7 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:55:39 has no hits.
BO16807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:53 Download gff for
BO16807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-PA | 1..492 | 15..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:31 Download gff for
BO16807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..642 | 14..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:20 Download gff for
BO16807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..642 | 14..507 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:20 Download gff for
BO16807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13402222..13402714 | 14..507 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:31 Download gff for
BO16807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13296255..13296747 | 14..507 | 99 | | Plus |
BO16807.complete Sequence
523 bp assembled on 2006-10-11
GenBank Submission: FJ633925
> BO16807.complete
GAAGTTATCAGTCGACATGCGTAAGATGCAAGTTCTAGTTCAGACGAGCG
ACGGCAAGAAGACGGTTTACGATGTGGATCGCTTCGGAACGGTGGCCAAC
CTGAAGGCACGGATCGGGCGAGCCATGTCCGTGCCCATGGGCTTCAGTCG
GCTGTCCTACAAGGGTCGCGAGCTGTCCAATCAGAGCATACTGGAGGATG
TGGGCCATAAGTCCATTCTGGATCTCACCTGGAAGCCGGTCGTCCTGACG
CCCAAGCAATTGCGCGAAAAGAAGATTGGCAAGTTTAGCAAGTTCGGCTA
TGGCAGGAAAAACGATAGTGGTGAACATATGTCTACATTGATCGGCGGTT
ACCAGCAACGCATAGATCTGGAAAGTGACGATGATGAACTGGAGGCACAG
GACTTGACTGAACTCGATTTGTTGTCCCTTAACTCCGATGATTCACTGGT
CAACAACCAGACGGAGCTAGAGCCGATTGCTCCATTGAATTTCTCTGGAT
CTGATGCAAGCTTTCTAGACCAT
BO16807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-RA | 492 | CG12725-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG33223-RB | 555 | CG33223-PB | 1..330 | 17..361 | 810 | 84.2 | Plus |
CG33223-RA | 555 | CG33223-PA | 1..330 | 17..361 | 810 | 84.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-RA | 1025 | CG12725-RA | 150..638 | 17..505 | 2445 | 100 | Plus |
CG33223-RB | 689 | CG33223-RB | 67..396 | 17..361 | 810 | 84.2 | Plus |
CG33223-RA | 1114 | CG33223-RA | 492..821 | 17..361 | 810 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13402226..13402714 | 505..17 | 2445 | 100 | Minus |
X | 23542271 | X | 8465983..8466312 | 361..17 | 810 | 84.2 | Minus |
X | 23542271 | X | 8457319..8457560 | 255..17 | 800 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:39:57 has no hits.
BO16807.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:19 Download gff for
BO16807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 1..492 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:27 Download gff for
BO16807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 1..492 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:42 Download gff for
BO16807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..638 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:20 Download gff for
BO16807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 1..492 | 17..509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:25:54 Download gff for
BO16807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12725-RA | 150..638 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:25:54 Download gff for
BO16807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13402224..13402714 | 17..507 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:42 Download gff for
BO16807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13296257..13296747 | 17..507 | 99 | | Minus |
BO16807.pep Sequence
Translation from 16 to 523
> BO16807.pep
MRKMQVLVQTSDGKKTVYDVDRFGTVANLKARIGRAMSVPMGFSRLSYKG
RELSNQSILEDVGHKSILDLTWKPVVLTPKQLREKKIGKFSKFGYGRKND
SGEHMSTLIGGYQQRIDLESDDDELEAQDLTELDLLSLNSDDSLVNNQTE
LEPIAPLNFSGSDASFLDH
BO16807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12725-PA | 163 | CG12725-PA | 1..163 | 1..163 | 827 | 100 | Plus |
CG33223-PB | 184 | CG33223-PB | 1..178 | 1..162 | 461 | 60.3 | Plus |
CG33223-PA | 184 | CG33223-PA | 1..178 | 1..162 | 461 | 60.3 | Plus |
CG32713-PB | 184 | CG32713-PB | 1..178 | 1..162 | 461 | 60.3 | Plus |
CG32713-PA | 184 | CG32713-PA | 1..178 | 1..162 | 461 | 60.3 | Plus |