Clone Sequence Records
BO16808.3prime Sequence
368 bp (368 high quality bases) assembled on 2006-10-13
> BO16808.3prime
ATGGTCTAGAAAGCTTGCACGACCCCAGATCTCGACGGTGGAGTTGATTC
CGCGGTTCACCTGACCACGAAGATTCACGGTGGCGAAGCGATAGCCCGGA
CCGCCGGAATAGAGGCTAGGAGATGCGCCGGAGTTGTTCTTAAAGTTGTC
GTAGACGATCACGGCGGAGATGTTGTAGAATCCGGCGGGATAGTTCACGT
TCACGTTCCAGTAGTTGTTCTTGATCGGATTGCGGACTTCCGTGGTGCGG
GACAGCAGGTAGTCGTTGTTATTGCGACGCCCCCAGGTGGCGCCGTAGGC
GTGGCAGCCAAGGATCACGGCCAGGACAACTGAGAGGATGAGCAGAAGAC
GCATGTCGACTGATAACT
BO16808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-PA | 339 | CG13323-RA | 1..336 | 354..19 | 1680 | 100 | Minus |
CG13324-PA | 339 | CG13324-RA | 172..336 | 183..19 | 650 | 95.7 | Minus |
CG13324-PA | 339 | CG13324-RA | 1..77 | 354..278 | 335 | 97.4 | Minus |
CG13324-PA | 339 | CG13324-RA | 106..164 | 249..191 | 245 | 96.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-RB | 2562 | CG13323-RB | 39..376 | 356..19 | 1690 | 100 | Minus |
CG13323-RA | 521 | CG13323-RA | 39..376 | 356..19 | 1690 | 100 | Minus |
CG13324-RA | 511 | CG13324-RA | 37..374 | 356..19 | 1300 | 92.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13046881..13047218 | 19..356 | 1690 | 100 | Plus |
2R | 25286936 | 2R | 13049283..13049620 | 19..356 | 1300 | 92.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:08:33 has no hits.
BO16808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:54 Download gff for
BO16808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-PA | 1..339 | 15..354 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:16 Download gff for
BO16808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 33..380 | 14..362 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:31 Download gff for
BO16808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 33..380 | 14..362 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:31 Download gff for
BO16808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13046877..13047224 | 14..362 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:16 Download gff for
BO16808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8934382..8934729 | 14..362 | 98 | | Plus |
BO16808.5prime Sequence
368 bp (368 high quality bases) assembled on 2006-10-13
> BO16808.5prime
GAAGTTATCAGTCGACATGCGTCTTCTGCTCATCCTCTCAGTTGTCCTGG
CCGTGATCCTTGGCTGCCACGCCTACGGCGCCACCTGGGGGCGTCGCAAT
AACAACGACTACCTGCTGTCCCGCACCACGGAAGTCCGCAATCCGATCAA
GAACAACTACTGGAACGTGAACGTGAACTATCCCGCCGGATTCTACAACA
TCTCCGCCGTGATCGTCTACGACAACTTTAAGAACAACTCCGGCGCATCT
CCTAGCCTCTATTCCGGCGGTCCGGGCTATCGCTTCGCCACCGTGAATCT
TCGTGGTCAGGTGAACCGCGGAATCAACTCCACCGTCGAGATCTGGGGTC
GTGCAAGCTTTCTAGACC
BO16808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-PA | 339 | CG13323-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG13324-PA | 339 | CG13324-RA | 172..336 | 188..352 | 650 | 95.7 | Plus |
CG13324-PA | 339 | CG13324-RA | 1..77 | 17..93 | 335 | 97.4 | Plus |
CG13324-PA | 339 | CG13324-RA | 106..164 | 122..180 | 245 | 96.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-RB | 2562 | CG13323-RB | 39..376 | 15..352 | 1690 | 100 | Plus |
CG13323-RA | 521 | CG13323-RA | 39..376 | 15..352 | 1690 | 100 | Plus |
CG13324-RA | 511 | CG13324-RA | 37..374 | 15..352 | 1300 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:50:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13046881..13047218 | 352..15 | 1690 | 100 | Minus |
2R | 25286936 | 2R | 13049283..13049620 | 352..15 | 1300 | 92.3 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:50:46 has no hits.
BO16808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:55 Download gff for
BO16808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-PA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:22 Download gff for
BO16808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 33..380 | 9..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:37 Download gff for
BO16808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 33..380 | 9..357 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:37 Download gff for
BO16808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13046877..13047224 | 9..357 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:22 Download gff for
BO16808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8934382..8934729 | 9..357 | 98 | | Minus |
BO16808.complete Sequence
370 bp assembled on 2006-10-11
GenBank Submission: FJ633926
> BO16808.complete
GAAGTTATCAGTCGACATGCGTCTTCTGCTCATCCTCTCAGTTGTCCTGG
CCGTGATCCTTGGCTGCCACGCCTACGGCGCCACCTGGGGGCGTCGCAAT
AACAACGACTACCTGCTGTCCCGCACCACGGAAGTCCGCAATCCGATCAA
GAACAACTACTGGAACGTGAACGTGAACTATCCCGCCGGATTCTACAACA
TCTCCGCCGTGATCGTCTACGACAACTTTAAGAACAACTCCGGCGCATCT
CCTAGCCTCTATTCCGGCGGTCCGGGCTATCGCTTCGCCACCGTGAATCT
TCGTGGTCAGGTGAACCGCGGAATCAACTCCACCGTCGAGATCTGGGGTC
GTGCAAGCTTTCTAGACCAT
BO16808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-RB | 339 | CG13323-PB | 1..336 | 17..352 | 1680 | 100 | Plus |
CG13323-RA | 339 | CG13323-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG13324-RA | 339 | CG13324-PA | 1..336 | 17..352 | 1290 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-RB | 2562 | CG13323-RB | 39..376 | 15..352 | 1690 | 100 | Plus |
CG13323-RA | 521 | CG13323-RA | 39..376 | 15..352 | 1690 | 100 | Plus |
CG13324-RA | 511 | CG13324-RA | 37..374 | 15..352 | 1300 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13046881..13047218 | 352..15 | 1690 | 100 | Minus |
2R | 25286936 | 2R | 13049283..13049620 | 352..15 | 1300 | 92.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:12:09 has no hits.
BO16808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:40 Download gff for
BO16808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 1..339 | 17..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:18 Download gff for
BO16808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 65..412 | 9..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:49 Download gff for
BO16808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 41..376 | 17..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:41 Download gff for
BO16808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 65..412 | 9..357 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:30 Download gff for
BO16808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13323-RA | 41..376 | 17..354 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:30 Download gff for
BO16808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13046879..13047216 | 17..354 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:49 Download gff for
BO16808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8934384..8934721 | 17..354 | 99 | | Minus |
BO16808.pep Sequence
Translation from 16 to 370
> BO16808.pep
MRLLLILSVVLAVILGCHAYGATWGRRNNNDYLLSRTTEVRNPIKNNYWN
VNVNYPAGFYNISAVIVYDNFKNNSGASPSLYSGGPGYRFATVNLRGQVN
RGINSTVEIWGRASFLDH
BO16808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13323-PB | 112 | CG13323-PB | 1..112 | 1..112 | 598 | 100 | Plus |
CG13323-PA | 112 | CG13323-PA | 1..112 | 1..112 | 598 | 100 | Plus |
CG13324-PA | 112 | CG13324-PA | 1..112 | 1..112 | 562 | 94.6 | Plus |
CG31789-PC | 117 | CG31789-PC | 4..114 | 1..110 | 145 | 32.5 | Plus |
CG31789-PB | 117 | CG31789-PB | 4..114 | 1..110 | 145 | 32.5 | Plus |