Clone BO16810 Report

Search the DGRC for BO16810

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG13807-RA
Protein status:BO16810.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO16810.3prime Sequence

542 bp (536 high quality bases) assembled on 2006-10-13

> BO16810.3prime
ATGGTCTAGAAAGCTTGCATCCTTGGATGCAGGCACAAAGTTTCCATAGT
CGCGTCTGACCTTCATGGGTGGTTCGTTATTGGGAGTATCATTTCTCTGG
TTATGATCATGGGAGCGCTTGTAGCCTCCAGATCCTCCGGACCCTCCGCC
TCCTTCGTACCGATTCCGGCGATCGATGTGATCGTATCTGTTGTTGCGCC
GGTTGTCCCTGAATCCCCTGTCCTGGTTGTTGTGGTAGCCAGCTCCTCCT
CGTCGCTGCCAGCCCCTGTCGCCGCCTCCTCTGCGATGTCCGTTGTAGCG
ATTGTGGTAGGGATGACCACCGCCTCCTCCGCCCTGGAAGCCGCCTCCTC
CTCCGCCACCTCCCATCCAGTTCTCCACAATTGGCGGCTCCGGCACAGGC
TTGCTGCAGTGCGCCATGAACTCTGGGTCGTCGTCAGTGAAGCGGTCTGC
GAACTCAAGCTCGCAGGACTCCAGGAAGTTCAGGTCCCTTTCGACCAGAC
GGTTTATCTTTCGGTTGGGATCCACCATGTCGACTGATAACT

BO16810.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-PA 513 CG13807-RA 1..510 528..19 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-RA 636 CG13807-RA 55..564 528..19 2550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2262973..2263294 528..207 1610 100 Minus
3L 28110227 3L 2263355..2263543 207..19 945 100 Minus
Blast to na_te.dros performed 2015-02-12 03:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2682..2729 261..215 111 72.9 Minus

BO16810.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:57 Download gff for BO16810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-PA 1..513 18..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:22 Download gff for BO16810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..569 11..528 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:58 Download gff for BO16810.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..569 11..528 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:58 Download gff for BO16810.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2262973..2263294 207..528 100 -> Minus
3L 2263356..2263548 11..206 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:22 Download gff for BO16810.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2262973..2263294 207..528 100 -> Minus
arm_3L 2263356..2263548 11..206 97   Minus

BO16810.5prime Sequence

542 bp (542 high quality bases) assembled on 2006-10-13

> BO16810.5prime
GAAGTTATCAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGG
TCGAAAGGGACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGAC
CGCTTCACTGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGT
GCCGGAGCCGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAG
GCGGCTTCCAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTAC
AACGGACATCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGG
AGCTGGCTACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCA
ACAACAGATACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGA
GGGTCCGGAGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAG
AAATGATACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATG
GAAACTTTGTGCCTGCATCCAAGGATGCAAGCTTTCTAGACC

BO16810.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-PA 513 CG13807-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-RA 636 CG13807-RA 55..564 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2262973..2263294 17..338 1610 100 Plus
3L 28110227 3L 2263355..2263543 338..526 945 100 Plus
Blast to na_te.dros performed 2015-02-02 17:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2682..2729 284..330 111 72.9 Plus

BO16810.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:58 Download gff for BO16810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-PA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:37 Download gff for BO16810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..569 17..534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:30 Download gff for BO16810.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..569 17..534 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:30 Download gff for BO16810.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2262973..2263294 17..338 100 -> Plus
3L 2263356..2263548 339..534 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:37 Download gff for BO16810.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2262973..2263294 17..338 100 -> Plus
arm_3L 2263356..2263548 339..534 97   Plus

BO16810.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ633927

> BO16810.complete
GAAGTTATCAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGG
TCGAAAGGGACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGAC
CGCTTCACTGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGT
GCCGGAGCCGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAG
GCGGCTTCCAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTAC
AACGGACATCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGG
AGCTGGCTACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCA
ACAACAGATACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGA
GGGTCCGGAGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAG
AAATGATACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATG
GAAACTTTGTGCCTGCATCCAAGGATGCAAGCTTTCTAGACCAT

BO16810.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-RA 513 CG13807-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-RA 636 CG13807-RA 55..564 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2262973..2263294 17..338 1610 100 Plus
3L 28110227 3L 2263355..2263543 338..526 945 100 Plus
Blast to na_te.dros performed 2014-11-27 10:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Tabor 7345 Tabor TABOR 7345bp 2682..2729 284..330 111 72.9 Plus

BO16810.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:30 Download gff for BO16810.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:39 Download gff for BO16810.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:03 Download gff for BO16810.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..564 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:30 Download gff for BO16810.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:01 Download gff for BO16810.complete
Subject Subject Range Query Range Percent Splice Strand
CG13807-RA 55..564 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:01 Download gff for BO16810.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2262973..2263294 17..338 100 -> Plus
3L 2263356..2263543 339..528 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:03 Download gff for BO16810.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2262973..2263294 17..338 100 -> Plus
arm_3L 2263356..2263543 339..528 98   Plus

BO16810.pep Sequence

Translation from 16 to 544

> BO16810.pep
MVDPNRKINRLVERDLNFLESCELEFADRFTDDDPEFMAHCSKPVPEPPI
VENWMGGGGGGGGFQGGGGGGHPYHNRYNGHRRGGGDRGWQRRGGAGYHN
NQDRGFRDNRRNNRYDHIDRRNRYEGGGGSGGSGGYKRSHDHNQRNDTPN
NEPPMKVRRDYGNFVPASKDASFLDH

BO16810.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13807-PA 170 CG13807-PA 1..170 1..170 978 100 Plus
caz-PD 355 CG3606-PD 266..324 57..143 158 47.1 Plus
caz-PC 384 CG3606-PC 295..353 57..143 158 47.1 Plus
caz-PB 399 CG3606-PB 310..368 57..143 158 47.1 Plus
CG30122-PD 1271 CG30122-PD 940..1044 56..163 154 39.1 Plus