Clone Sequence Records
BO16810.3prime Sequence
542 bp (536 high quality bases) assembled on 2006-10-13
> BO16810.3prime
ATGGTCTAGAAAGCTTGCATCCTTGGATGCAGGCACAAAGTTTCCATAGT
CGCGTCTGACCTTCATGGGTGGTTCGTTATTGGGAGTATCATTTCTCTGG
TTATGATCATGGGAGCGCTTGTAGCCTCCAGATCCTCCGGACCCTCCGCC
TCCTTCGTACCGATTCCGGCGATCGATGTGATCGTATCTGTTGTTGCGCC
GGTTGTCCCTGAATCCCCTGTCCTGGTTGTTGTGGTAGCCAGCTCCTCCT
CGTCGCTGCCAGCCCCTGTCGCCGCCTCCTCTGCGATGTCCGTTGTAGCG
ATTGTGGTAGGGATGACCACCGCCTCCTCCGCCCTGGAAGCCGCCTCCTC
CTCCGCCACCTCCCATCCAGTTCTCCACAATTGGCGGCTCCGGCACAGGC
TTGCTGCAGTGCGCCATGAACTCTGGGTCGTCGTCAGTGAAGCGGTCTGC
GAACTCAAGCTCGCAGGACTCCAGGAAGTTCAGGTCCCTTTCGACCAGAC
GGTTTATCTTTCGGTTGGGATCCACCATGTCGACTGATAACT
BO16810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-PA | 513 | CG13807-RA | 1..510 | 528..19 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-RA | 636 | CG13807-RA | 55..564 | 528..19 | 2550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2262973..2263294 | 528..207 | 1610 | 100 | Minus |
3L | 28110227 | 3L | 2263355..2263543 | 207..19 | 945 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2682..2729 | 261..215 | 111 | 72.9 | Minus |
BO16810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:57 Download gff for
BO16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-PA | 1..513 | 18..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:22 Download gff for
BO16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..569 | 11..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:58 Download gff for
BO16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..569 | 11..528 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:58 Download gff for
BO16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2262973..2263294 | 207..528 | 100 | -> | Minus |
3L | 2263356..2263548 | 11..206 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:22 Download gff for
BO16810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2262973..2263294 | 207..528 | 100 | -> | Minus |
arm_3L | 2263356..2263548 | 11..206 | 97 | | Minus |
BO16810.5prime Sequence
542 bp (542 high quality bases) assembled on 2006-10-13
> BO16810.5prime
GAAGTTATCAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGG
TCGAAAGGGACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGAC
CGCTTCACTGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGT
GCCGGAGCCGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAG
GCGGCTTCCAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTAC
AACGGACATCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGG
AGCTGGCTACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCA
ACAACAGATACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGA
GGGTCCGGAGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAG
AAATGATACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATG
GAAACTTTGTGCCTGCATCCAAGGATGCAAGCTTTCTAGACC
BO16810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-PA | 513 | CG13807-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-RA | 636 | CG13807-RA | 55..564 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2262973..2263294 | 17..338 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 2263355..2263543 | 338..526 | 945 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 17:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2682..2729 | 284..330 | 111 | 72.9 | Plus |
BO16810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:58 Download gff for
BO16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-PA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:37 Download gff for
BO16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..569 | 17..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:30 Download gff for
BO16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..569 | 17..534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:30 Download gff for
BO16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2262973..2263294 | 17..338 | 100 | -> | Plus |
3L | 2263356..2263548 | 339..534 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:37 Download gff for
BO16810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2262973..2263294 | 17..338 | 100 | -> | Plus |
arm_3L | 2263356..2263548 | 339..534 | 97 | | Plus |
BO16810.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ633927
> BO16810.complete
GAAGTTATCAGTCGACATGGTGGATCCCAACCGAAAGATAAACCGTCTGG
TCGAAAGGGACCTGAACTTCCTGGAGTCCTGCGAGCTTGAGTTCGCAGAC
CGCTTCACTGACGACGACCCAGAGTTCATGGCGCACTGCAGCAAGCCTGT
GCCGGAGCCGCCAATTGTGGAGAACTGGATGGGAGGTGGCGGAGGAGGAG
GCGGCTTCCAGGGCGGAGGAGGCGGTGGTCATCCCTACCACAATCGCTAC
AACGGACATCGCAGAGGAGGCGGCGACAGGGGCTGGCAGCGACGAGGAGG
AGCTGGCTACCACAACAACCAGGACAGGGGATTCAGGGACAACCGGCGCA
ACAACAGATACGATCACATCGATCGCCGGAATCGGTACGAAGGAGGCGGA
GGGTCCGGAGGATCTGGAGGCTACAAGCGCTCCCATGATCATAACCAGAG
AAATGATACTCCCAATAACGAACCACCCATGAAGGTCAGACGCGACTATG
GAAACTTTGTGCCTGCATCCAAGGATGCAAGCTTTCTAGACCAT
BO16810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-RA | 513 | CG13807-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-RA | 636 | CG13807-RA | 55..564 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:40:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2262973..2263294 | 17..338 | 1610 | 100 | Plus |
3L | 28110227 | 3L | 2263355..2263543 | 338..526 | 945 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 2682..2729 | 284..330 | 111 | 72.9 | Plus |
BO16810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:30 Download gff for
BO16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:39 Download gff for
BO16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:20:03 Download gff for
BO16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..564 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:30 Download gff for
BO16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:01 Download gff for
BO16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13807-RA | 55..564 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:28:01 Download gff for
BO16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2262973..2263294 | 17..338 | 100 | -> | Plus |
3L | 2263356..2263543 | 339..528 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:20:03 Download gff for
BO16810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2262973..2263294 | 17..338 | 100 | -> | Plus |
arm_3L | 2263356..2263543 | 339..528 | 98 | | Plus |
BO16810.pep Sequence
Translation from 16 to 544
> BO16810.pep
MVDPNRKINRLVERDLNFLESCELEFADRFTDDDPEFMAHCSKPVPEPPI
VENWMGGGGGGGGFQGGGGGGHPYHNRYNGHRRGGGDRGWQRRGGAGYHN
NQDRGFRDNRRNNRYDHIDRRNRYEGGGGSGGSGGYKRSHDHNQRNDTPN
NEPPMKVRRDYGNFVPASKDASFLDH
BO16810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13807-PA | 170 | CG13807-PA | 1..170 | 1..170 | 978 | 100 | Plus |
caz-PD | 355 | CG3606-PD | 266..324 | 57..143 | 158 | 47.1 | Plus |
caz-PC | 384 | CG3606-PC | 295..353 | 57..143 | 158 | 47.1 | Plus |
caz-PB | 399 | CG3606-PB | 310..368 | 57..143 | 158 | 47.1 | Plus |
CG30122-PD | 1271 | CG30122-PD | 940..1044 | 56..163 | 154 | 39.1 | Plus |