Clone Sequence Records
BO16811.3prime Sequence
482 bp (482 high quality bases) assembled on 2006-10-13
> BO16811.3prime
ATGGTCTAGAAAGCTTGCATTAGTTTGCCCTTGCGGCTCAGCATTTAACC
TCTTTAGCGCCTGAGTGCTTTTTGGTGTGAGTTCTTCATCGCGACCCTGG
TTGTCAACCATGGCAGCACTGGTTCCACTCGAGATCCTCTCCTGCAGCCG
ACTATGTTCCGGGGCGGCGGTGATGGAGGAACTGGGCTCGTTATGATCGC
GATGTTCGTCCGGATCCAGGCGACTGGGCACTATCGAGTAACGATAGTTC
TTCACTCGCAGATAGCCGTAGATTAGGGCGTCGTGGAGGCTTACTGTGAT
CTGGCGCTTCAGCTCCTCGTCGCTGCGATCCAACCGATCGGCGACCGCGT
CCATGATCTCGGGTTCGGTGAGCGGATGGTCGGCATCGGCGATCACCTGT
AGGATGTTGCTAAACAAATTCGGAATGAGTTTGCGGCGCGGTGCGCGATT
GTAGCTGCTGTGCAACATGTCGACTGATAACT
BO16811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12691-PA | 453 | CG12691-RA | 1..450 | 468..19 | 2250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12691-RA | 573 | CG12691-RA | 64..513 | 468..19 | 2250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4266160..4266609 | 468..19 | 2250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:51:01 has no hits.
BO16811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:59 Download gff for
BO16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-PA | 1..453 | 16..468 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:24 Download gff for
BO16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 53..513 | 19..476 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:38 Download gff for
BO16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 53..513 | 19..476 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:38 Download gff for
BO16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4266149..4266609 | 19..476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:24 Download gff for
BO16811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4160182..4160642 | 19..476 | 99 | | Minus |
BO16811.5prime Sequence
482 bp (482 high quality bases) assembled on 2006-10-13
> BO16811.5prime
GAAGTTATCAGTCGACATGTTGCACAGCAGCTACAATCGCGCACCGCGCC
GCAAACTCATTCCGAATTTGTTTAGCAACATCCTACAGGTGATCGCCGAT
GCCGACCATCCGCTCACCGAACCCGAGATCATGGACGCGGTCGCCGATCG
GTTGGATCGCAGCGACGAGGAGCTGAAGCGCCAGATCACAGTAAGCCTCC
ACGACGCCCTAATCTACGGCTATCTGCGAGTGAAGAACTATCGTTACTCG
ATAGTGCCCAGTCGCCTGGATCCGGACGAACATCGCGATCATAACGAGCC
CAGTTCCTCCATCACCGCCGCCCCGGAACATAGTCGGCTGCAGGAGAGGA
TCTCGAGTGGAACCAGTGCTGCCATGGTTGACAACCAGGGTCGCGATGAA
GAACTCACACCAAAAAGCACTCAGGCGCTAAAGAGGTTAAATGCTGAGCC
GCAAGGGCAAACTAATGCAAGCTTTCTAGACC
BO16811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12691-PA | 453 | CG12691-RA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12691-RA | 573 | CG12691-RA | 64..513 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4266160..4266609 | 17..466 | 2250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:08:43 has no hits.
BO16811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:59 Download gff for
BO16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-PA | 1..453 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:22 Download gff for
BO16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 53..513 | 9..466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:17 Download gff for
BO16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 53..513 | 9..466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:17 Download gff for
BO16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4266159..4266609 | 11..466 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:22 Download gff for
BO16811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4160192..4160642 | 11..466 | 98 | | Plus |
BO16811.complete Sequence
484 bp assembled on 2006-10-11
GenBank Submission: FJ633928
> BO16811.complete
GAAGTTATCAGTCGACATGTTGCACAGCAGCTACAATCGCGCACCGCGCC
GCAAACTCATTCCGAATTTGTTTAGCAACATCCTACAGGTGATCGCCGAT
GCCGACCATCCGCTCACCGAACCCGAGATCATGGACGCGGTCGCCGATCG
GTTGGATCGCAGCGACGAGGAGCTGAAGCGCCAGATCACAGTAAGCCTCC
ACGACGCCCTAATCTACGGCTATCTGCGAGTGAAGAACTATCGTTACTCG
ATAGTGCCCAGTCGCCTGGATCCGGACGAACATCGCGATCATAACGAGCC
CAGTTCCTCCATCACCGCCGCCCCGGAACATAGTCGGCTGCAGGAGAGGA
TCTCGAGTGGAACCAGTGCTGCCATGGTTGACAACCAGGGTCGCGATGAA
GAACTCACACCAAAAAGCACTCAGGCGCTAAAGAGGTTAAATGCTGAGCC
GCAAGGGCAAACTAATGCAAGCTTTCTAGACCAT
BO16811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12691-RA | 453 | CG12691-PA | 1..450 | 17..466 | 2250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12691-RA | 573 | CG12691-RA | 64..513 | 17..466 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4266160..4266609 | 17..466 | 2250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:34:20 has no hits.
BO16811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:58 Download gff for
BO16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 1..453 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:41 Download gff for
BO16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 1..453 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:05 Download gff for
BO16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 69..513 | 22..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:58 Download gff for
BO16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 1..453 | 17..469 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:20 Download gff for
BO16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12691-RA | 69..513 | 22..468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:20 Download gff for
BO16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4266165..4266609 | 22..468 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:05 Download gff for
BO16811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4160198..4160642 | 22..468 | 99 | | Plus |
BO16811.pep Sequence
Translation from 16 to 484
> BO16811.pep
MLHSSYNRAPRRKLIPNLFSNILQVIADADHPLTEPEIMDAVADRLDRSD
EELKRQITVSLHDALIYGYLRVKNYRYSIVPSRLDPDEHRDHNEPSSSIT
AAPEHSRLQERISSGTSAAMVDNQGRDEELTPKSTQALKRLNAEPQGQTN
ASFLDH
BO16811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12691-PA | 150 | CG12691-PA | 1..150 | 1..150 | 766 | 100 | Plus |