Clone BO16811 Report

Search the DGRC for BO16811

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG12691-RA
Protein status:BO16811.pep: validated full length
Sequenced Size:484

Clone Sequence Records

BO16811.3prime Sequence

482 bp (482 high quality bases) assembled on 2006-10-13

> BO16811.3prime
ATGGTCTAGAAAGCTTGCATTAGTTTGCCCTTGCGGCTCAGCATTTAACC
TCTTTAGCGCCTGAGTGCTTTTTGGTGTGAGTTCTTCATCGCGACCCTGG
TTGTCAACCATGGCAGCACTGGTTCCACTCGAGATCCTCTCCTGCAGCCG
ACTATGTTCCGGGGCGGCGGTGATGGAGGAACTGGGCTCGTTATGATCGC
GATGTTCGTCCGGATCCAGGCGACTGGGCACTATCGAGTAACGATAGTTC
TTCACTCGCAGATAGCCGTAGATTAGGGCGTCGTGGAGGCTTACTGTGAT
CTGGCGCTTCAGCTCCTCGTCGCTGCGATCCAACCGATCGGCGACCGCGT
CCATGATCTCGGGTTCGGTGAGCGGATGGTCGGCATCGGCGATCACCTGT
AGGATGTTGCTAAACAAATTCGGAATGAGTTTGCGGCGCGGTGCGCGATT
GTAGCTGCTGTGCAACATGTCGACTGATAACT

BO16811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-PA 453 CG12691-RA 1..450 468..19 2250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-RA 573 CG12691-RA 64..513 468..19 2250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4266160..4266609 468..19 2250 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:51:01 has no hits.

BO16811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:59 Download gff for BO16811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-PA 1..453 16..468 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:24 Download gff for BO16811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 53..513 19..476 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:38 Download gff for BO16811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 53..513 19..476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:38 Download gff for BO16811.3prime
Subject Subject Range Query Range Percent Splice Strand
X 4266149..4266609 19..476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:24 Download gff for BO16811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4160182..4160642 19..476 99   Minus

BO16811.5prime Sequence

482 bp (482 high quality bases) assembled on 2006-10-13

> BO16811.5prime
GAAGTTATCAGTCGACATGTTGCACAGCAGCTACAATCGCGCACCGCGCC
GCAAACTCATTCCGAATTTGTTTAGCAACATCCTACAGGTGATCGCCGAT
GCCGACCATCCGCTCACCGAACCCGAGATCATGGACGCGGTCGCCGATCG
GTTGGATCGCAGCGACGAGGAGCTGAAGCGCCAGATCACAGTAAGCCTCC
ACGACGCCCTAATCTACGGCTATCTGCGAGTGAAGAACTATCGTTACTCG
ATAGTGCCCAGTCGCCTGGATCCGGACGAACATCGCGATCATAACGAGCC
CAGTTCCTCCATCACCGCCGCCCCGGAACATAGTCGGCTGCAGGAGAGGA
TCTCGAGTGGAACCAGTGCTGCCATGGTTGACAACCAGGGTCGCGATGAA
GAACTCACACCAAAAAGCACTCAGGCGCTAAAGAGGTTAAATGCTGAGCC
GCAAGGGCAAACTAATGCAAGCTTTCTAGACC

BO16811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-PA 453 CG12691-RA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-RA 573 CG12691-RA 64..513 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4266160..4266609 17..466 2250 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:08:43 has no hits.

BO16811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:56:59 Download gff for BO16811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-PA 1..453 17..469 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:22 Download gff for BO16811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 53..513 9..466 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:17 Download gff for BO16811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 53..513 9..466 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:17 Download gff for BO16811.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4266159..4266609 11..466 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:22 Download gff for BO16811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4160192..4160642 11..466 98   Plus

BO16811.complete Sequence

484 bp assembled on 2006-10-11

GenBank Submission: FJ633928

> BO16811.complete
GAAGTTATCAGTCGACATGTTGCACAGCAGCTACAATCGCGCACCGCGCC
GCAAACTCATTCCGAATTTGTTTAGCAACATCCTACAGGTGATCGCCGAT
GCCGACCATCCGCTCACCGAACCCGAGATCATGGACGCGGTCGCCGATCG
GTTGGATCGCAGCGACGAGGAGCTGAAGCGCCAGATCACAGTAAGCCTCC
ACGACGCCCTAATCTACGGCTATCTGCGAGTGAAGAACTATCGTTACTCG
ATAGTGCCCAGTCGCCTGGATCCGGACGAACATCGCGATCATAACGAGCC
CAGTTCCTCCATCACCGCCGCCCCGGAACATAGTCGGCTGCAGGAGAGGA
TCTCGAGTGGAACCAGTGCTGCCATGGTTGACAACCAGGGTCGCGATGAA
GAACTCACACCAAAAAGCACTCAGGCGCTAAAGAGGTTAAATGCTGAGCC
GCAAGGGCAAACTAATGCAAGCTTTCTAGACCAT

BO16811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-RA 453 CG12691-PA 1..450 17..466 2250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-RA 573 CG12691-RA 64..513 17..466 2250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4266160..4266609 17..466 2250 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:34:20 has no hits.

BO16811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:58 Download gff for BO16811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 1..453 17..469 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:41 Download gff for BO16811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 1..453 17..469 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:05 Download gff for BO16811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 69..513 22..468 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:58 Download gff for BO16811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 1..453 17..469 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:20 Download gff for BO16811.complete
Subject Subject Range Query Range Percent Splice Strand
CG12691-RA 69..513 22..468 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:20 Download gff for BO16811.complete
Subject Subject Range Query Range Percent Splice Strand
X 4266165..4266609 22..468 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:05 Download gff for BO16811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4160198..4160642 22..468 99   Plus

BO16811.pep Sequence

Translation from 16 to 484

> BO16811.pep
MLHSSYNRAPRRKLIPNLFSNILQVIADADHPLTEPEIMDAVADRLDRSD
EELKRQITVSLHDALIYGYLRVKNYRYSIVPSRLDPDEHRDHNEPSSSIT
AAPEHSRLQERISSGTSAAMVDNQGRDEELTPKSTQALKRLNAEPQGQTN
ASFLDH

BO16811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12691-PA 150 CG12691-PA 1..150 1..150 766 100 Plus