Clone BO16815 Report

Search the DGRC for BO16815

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG12535-RB
Protein status:BO16815.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO16815.3prime Sequence

506 bp (452 high quality bases) assembled on 2006-10-13

> BO16815.3prime
ATGGTCTAGAAAGCTTGCAATGATACGCAGCGAGTGCTCGACGTGCTCGC
CGAGCGCCAACTCGAAAACGCTCTTCACGCAGCAAACCATCGCGACGAAG
ATCACATGCAAAACGAGCGACAGCAGCGTCTGCGGATCGAGCGGCAAACG
GCCGGTCAATACGTCGAAGGACCAAAGGAAGCACTCCATCGTTAGGACGA
TGCTGGTCACCAGAATCCATGGCGACATGGCGTAGGGGGAGATCGTTACG
ATTCCGTAAATAAGCATTAGCCAAGCGATCAGGATTATGGCCAAGCTCAA
AAGTCGAGCCTTTCGCAGCGTCCAATGTTTTAGGACATAGAAGTGCCGTT
GGCGCCACATGGCCAATTTGGTGCAGGGACATGACCAAACTTTCATCAGT
TCATAGCAATTGGAACATGTTCCAAAGACACTGAGCAGCACCACCAGCCA
AAAGACAATGGGAAATGATTCGACGCGGCACAGATTGCAGGATTGGAGCA
CGGGTT

BO16815.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-PB 618 CG12535-RB 128..615 506..19 2440 100 Minus
CG12535-PA 513 CG12535-RA 23..510 506..19 2440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-RE 1643 CG12535-RE 975..1462 506..19 2440 100 Minus
CG12535-RD 1603 CG12535-RD 846..1333 506..19 2440 100 Minus
CG12535-RC 1824 CG12535-RC 1156..1643 506..19 2440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3393025..3393287 244..506 1315 100 Plus
X 23542271 X 3392667..3392892 19..244 1130 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:44:26 has no hits.

BO16815.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:03 Download gff for BO16815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-PA 23..513 16..506 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:25 Download gff for BO16815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1156..1643 19..506 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:52 Download gff for BO16815.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1156..1643 19..506 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:52 Download gff for BO16815.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3392667..3392891 19..243 100 <- Plus
X 3393025..3393287 244..506 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:25 Download gff for BO16815.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3286700..3286924 19..243 100 <- Plus
arm_X 3287058..3287320 244..506 100   Plus

BO16815.5prime Sequence

571 bp (478 high quality bases) assembled on 2006-10-13

> BO16815.5prime
GAAGTTATCAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTC
GCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTAC
TCGATTTGGACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGT
GCTCCAATCCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTT
GGCTGGTGGTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAA
CTGATGAAAGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCA
ACGGCACTTCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTT
TGAGCTTGGCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATC
GTAACGATCTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCAT
CGTCCTAACGATGGAGTGCTTCCTTTGGTCTTTCGACGTATTGACCGGCC
GTTTGCCGCTCGATCCGCAAACGCTGCTGTCGCTCGTTTTGCATGTGATC
TTCGTCGCGATGGGTTGCTGC

BO16815.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-PB 618 CG12535-RB 1..555 17..571 2675 99.2 Plus
CG12535-PA 513 CG12535-RA 1..450 122..571 2175 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-RE 1643 CG12535-RE 848..1402 17..571 2715 99.3 Plus
CG12535-RD 1603 CG12535-RD 719..1273 17..571 2715 99.3 Plus
CG12535-RC 1824 CG12535-RC 1029..1583 17..571 2715 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3393025..3393414 406..17 1935 99.7 Minus
X 23542271 X 3392727..3392892 571..406 785 98.2 Minus
Blast to na_te.dros performed on 2015-02-08 11:51:26 has no hits.

BO16815.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:04 Download gff for BO16815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-PB 1..555 17..571 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:28 Download gff for BO16815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1022..1583 9..571 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:43 Download gff for BO16815.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1022..1583 9..571 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:43 Download gff for BO16815.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3392727..3392891 407..571 98 <- Minus
X 3393025..3393421 9..406 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:28 Download gff for BO16815.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3286760..3286924 407..571 98 <- Minus
arm_X 3287058..3287454 9..406 98   Minus

BO16815.complete Sequence

649 bp assembled on 2006-10-11

GenBank Submission: FJ633929

> BO16815.complete
GAAGTTATCAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTC
GCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTAC
TCGATTTGGACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGT
GCTCCAATCCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTT
GGCTGGTGGTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAA
CTGATGAAAGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCA
ACGGCACTTCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTT
TGAGCTTGGCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATC
GTAACGATCTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCAT
CGTCCTAACGATGGAGTGCTTCCTTTGGTCCTTCGACGTATTGACCGGCC
GTTTGCCGCTCGATCCGCAGACGCTGCTGTCGCTCGTTTTGCATGTGATC
TTCGTCGCGATGGTTTGCTGCGTGAAGAGCGTTTTCGAGTTGGCGCTCGG
CGAGCACGTCGAGCACTCGCTGCGTATCATTGCAAGCTTTCTAGACCAT

BO16815.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-RE 618 CG12535-PE 1..615 17..631 3060 99.8 Plus
CG12535-RD 618 CG12535-PD 1..615 17..631 3060 99.8 Plus
CG12535-RC 618 CG12535-PC 1..615 17..631 3060 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-RE 1643 CG12535-RE 848..1462 17..631 3060 99.8 Plus
CG12535-RD 1603 CG12535-RD 719..1333 17..631 3060 99.8 Plus
CG12535-RC 1824 CG12535-RC 1029..1643 17..631 3060 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3393025..3393414 406..17 1935 99.7 Minus
X 23542271 X 3392667..3392892 631..406 1130 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:56:38 has no hits.

BO16815.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:54 Download gff for BO16815.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RB 1..618 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:36 Download gff for BO16815.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RB 1..615 17..631 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:21 Download gff for BO16815.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1034..1643 22..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:54 Download gff for BO16815.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RB 1..615 17..631 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:08 Download gff for BO16815.complete
Subject Subject Range Query Range Percent Splice Strand
CG12535-RC 1034..1643 22..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:08 Download gff for BO16815.complete
Subject Subject Range Query Range Percent Splice Strand
X 3392664..3392891 407..633 99 <- Minus
X 3393025..3393409 22..406 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:21 Download gff for BO16815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3286697..3286924 407..633 99 <- Minus
arm_X 3287058..3287442 22..406 99   Minus

BO16815.pep Sequence

Translation from 16 to 649

> BO16815.pep
MFELQHITTRIRTLLRRTFHLSSNYDTYSIWTFCPMTNWNQLKPVLQSCN
LCRVESFPIVFWLVVLLSVFGTCSNCYELMKVWSCPCTKLAMWRQRHFYV
LKHWTLRKARLLSLAIILIAWLMLIYGIVTISPYAMSPWILVTSIVLTME
CFLWSFDVLTGRLPLDPQTLLSLVLHVIFVAMVCCVKSVFELALGEHVEH
SLRIIASFLDH

BO16815.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12535-PE 205 CG12535-PE 1..205 1..205 1101 100 Plus
CG12535-PD 205 CG12535-PD 1..205 1..205 1101 100 Plus
CG12535-PC 205 CG12535-PC 1..205 1..205 1101 100 Plus
CG12535-PF 205 CG12535-PF 1..205 1..205 1101 100 Plus
CG12535-PB 205 CG12535-PB 1..205 1..205 1101 100 Plus