Clone Sequence Records
BO16815.3prime Sequence
506 bp (452 high quality bases) assembled on 2006-10-13
> BO16815.3prime
ATGGTCTAGAAAGCTTGCAATGATACGCAGCGAGTGCTCGACGTGCTCGC
CGAGCGCCAACTCGAAAACGCTCTTCACGCAGCAAACCATCGCGACGAAG
ATCACATGCAAAACGAGCGACAGCAGCGTCTGCGGATCGAGCGGCAAACG
GCCGGTCAATACGTCGAAGGACCAAAGGAAGCACTCCATCGTTAGGACGA
TGCTGGTCACCAGAATCCATGGCGACATGGCGTAGGGGGAGATCGTTACG
ATTCCGTAAATAAGCATTAGCCAAGCGATCAGGATTATGGCCAAGCTCAA
AAGTCGAGCCTTTCGCAGCGTCCAATGTTTTAGGACATAGAAGTGCCGTT
GGCGCCACATGGCCAATTTGGTGCAGGGACATGACCAAACTTTCATCAGT
TCATAGCAATTGGAACATGTTCCAAAGACACTGAGCAGCACCACCAGCCA
AAAGACAATGGGAAATGATTCGACGCGGCACAGATTGCAGGATTGGAGCA
CGGGTT
BO16815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-PB | 618 | CG12535-RB | 128..615 | 506..19 | 2440 | 100 | Minus |
CG12535-PA | 513 | CG12535-RA | 23..510 | 506..19 | 2440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-RE | 1643 | CG12535-RE | 975..1462 | 506..19 | 2440 | 100 | Minus |
CG12535-RD | 1603 | CG12535-RD | 846..1333 | 506..19 | 2440 | 100 | Minus |
CG12535-RC | 1824 | CG12535-RC | 1156..1643 | 506..19 | 2440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3393025..3393287 | 244..506 | 1315 | 100 | Plus |
X | 23542271 | X | 3392667..3392892 | 19..244 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:44:26 has no hits.
BO16815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:03 Download gff for
BO16815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-PA | 23..513 | 16..506 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:25 Download gff for
BO16815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1156..1643 | 19..506 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:52 Download gff for
BO16815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1156..1643 | 19..506 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:52 Download gff for
BO16815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3392667..3392891 | 19..243 | 100 | <- | Plus |
X | 3393025..3393287 | 244..506 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:25 Download gff for
BO16815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3286700..3286924 | 19..243 | 100 | <- | Plus |
arm_X | 3287058..3287320 | 244..506 | 100 | | Plus |
BO16815.5prime Sequence
571 bp (478 high quality bases) assembled on 2006-10-13
> BO16815.5prime
GAAGTTATCAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTC
GCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTAC
TCGATTTGGACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGT
GCTCCAATCCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTT
GGCTGGTGGTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAA
CTGATGAAAGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCA
ACGGCACTTCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTT
TGAGCTTGGCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATC
GTAACGATCTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCAT
CGTCCTAACGATGGAGTGCTTCCTTTGGTCTTTCGACGTATTGACCGGCC
GTTTGCCGCTCGATCCGCAAACGCTGCTGTCGCTCGTTTTGCATGTGATC
TTCGTCGCGATGGGTTGCTGC
BO16815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-PB | 618 | CG12535-RB | 1..555 | 17..571 | 2675 | 99.2 | Plus |
CG12535-PA | 513 | CG12535-RA | 1..450 | 122..571 | 2175 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:51:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-RE | 1643 | CG12535-RE | 848..1402 | 17..571 | 2715 | 99.3 | Plus |
CG12535-RD | 1603 | CG12535-RD | 719..1273 | 17..571 | 2715 | 99.3 | Plus |
CG12535-RC | 1824 | CG12535-RC | 1029..1583 | 17..571 | 2715 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3393025..3393414 | 406..17 | 1935 | 99.7 | Minus |
X | 23542271 | X | 3392727..3392892 | 571..406 | 785 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:51:26 has no hits.
BO16815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:04 Download gff for
BO16815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-PB | 1..555 | 17..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:28 Download gff for
BO16815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1022..1583 | 9..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:43 Download gff for
BO16815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1022..1583 | 9..571 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:43 Download gff for
BO16815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3392727..3392891 | 407..571 | 98 | <- | Minus |
X | 3393025..3393421 | 9..406 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:28 Download gff for
BO16815.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3286760..3286924 | 407..571 | 98 | <- | Minus |
arm_X | 3287058..3287454 | 9..406 | 98 | | Minus |
BO16815.complete Sequence
649 bp assembled on 2006-10-11
GenBank Submission: FJ633929
> BO16815.complete
GAAGTTATCAGTCGACATGTTCGAACTGCAGCATATTACCACTCGGATTC
GCACACTTTTGCGTAGAACCTTTCACCTGTCCAGCAATTATGACACGTAC
TCGATTTGGACCTTTTGCCCGATGACCAATTGGAACCAGCTTAAACCCGT
GCTCCAATCCTGCAATCTGTGCCGCGTCGAATCATTTCCCATTGTCTTTT
GGCTGGTGGTGCTGCTCAGTGTCTTTGGAACATGTTCCAATTGCTATGAA
CTGATGAAAGTTTGGTCATGTCCCTGCACCAAATTGGCCATGTGGCGCCA
ACGGCACTTCTATGTCCTAAAACATTGGACGCTGCGAAAGGCTCGACTTT
TGAGCTTGGCCATAATCCTGATCGCTTGGCTAATGCTTATTTACGGAATC
GTAACGATCTCCCCCTACGCCATGTCGCCATGGATTCTGGTGACCAGCAT
CGTCCTAACGATGGAGTGCTTCCTTTGGTCCTTCGACGTATTGACCGGCC
GTTTGCCGCTCGATCCGCAGACGCTGCTGTCGCTCGTTTTGCATGTGATC
TTCGTCGCGATGGTTTGCTGCGTGAAGAGCGTTTTCGAGTTGGCGCTCGG
CGAGCACGTCGAGCACTCGCTGCGTATCATTGCAAGCTTTCTAGACCAT
BO16815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-RE | 618 | CG12535-PE | 1..615 | 17..631 | 3060 | 99.8 | Plus |
CG12535-RD | 618 | CG12535-PD | 1..615 | 17..631 | 3060 | 99.8 | Plus |
CG12535-RC | 618 | CG12535-PC | 1..615 | 17..631 | 3060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-RE | 1643 | CG12535-RE | 848..1462 | 17..631 | 3060 | 99.8 | Plus |
CG12535-RD | 1603 | CG12535-RD | 719..1333 | 17..631 | 3060 | 99.8 | Plus |
CG12535-RC | 1824 | CG12535-RC | 1029..1643 | 17..631 | 3060 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3393025..3393414 | 406..17 | 1935 | 99.7 | Minus |
X | 23542271 | X | 3392667..3392892 | 631..406 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:56:38 has no hits.
BO16815.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:54 Download gff for
BO16815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RB | 1..618 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:42:36 Download gff for
BO16815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RB | 1..615 | 17..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:21 Download gff for
BO16815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1034..1643 | 22..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:54 Download gff for
BO16815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RB | 1..615 | 17..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:08 Download gff for
BO16815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12535-RC | 1034..1643 | 22..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:08 Download gff for
BO16815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3392664..3392891 | 407..633 | 99 | <- | Minus |
X | 3393025..3393409 | 22..406 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:21 Download gff for
BO16815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3286697..3286924 | 407..633 | 99 | <- | Minus |
arm_X | 3287058..3287442 | 22..406 | 99 | | Minus |
BO16815.pep Sequence
Translation from 16 to 649
> BO16815.pep
MFELQHITTRIRTLLRRTFHLSSNYDTYSIWTFCPMTNWNQLKPVLQSCN
LCRVESFPIVFWLVVLLSVFGTCSNCYELMKVWSCPCTKLAMWRQRHFYV
LKHWTLRKARLLSLAIILIAWLMLIYGIVTISPYAMSPWILVTSIVLTME
CFLWSFDVLTGRLPLDPQTLLSLVLHVIFVAMVCCVKSVFELALGEHVEH
SLRIIASFLDH
BO16815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12535-PE | 205 | CG12535-PE | 1..205 | 1..205 | 1101 | 100 | Plus |
CG12535-PD | 205 | CG12535-PD | 1..205 | 1..205 | 1101 | 100 | Plus |
CG12535-PC | 205 | CG12535-PC | 1..205 | 1..205 | 1101 | 100 | Plus |
CG12535-PF | 205 | CG12535-PF | 1..205 | 1..205 | 1101 | 100 | Plus |
CG12535-PB | 205 | CG12535-PB | 1..205 | 1..205 | 1101 | 100 | Plus |