Clone BO16821 Report

Search the DGRC for BO16821

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG14071-RA
Protein status:BO16821.pep: validated full length
Sequenced Size:442

Clone Sequence Records

BO16821.3prime Sequence

440 bp (440 high quality bases) assembled on 2006-10-13

> BO16821.3prime
ATGGTCTAGAAAGCTTGCCATTGAGGCGGCTGCTGCCGATTCCTCATTAG
CCACTGTGATGGCCTTTTCAATGACTCCCTTCAGCTTCCTGATGTCCGCA
TCCAGGTAAATAAGGCGCTCGTACGTGGCAGCCAGCTTGTTGATAATGCT
ACCGAGGTGATTCCTCAGAATTTCCTGCAGCTCGTCCTCGTTGGGAGCAA
CGAATGGCTGGCCACTCAAATTGCACTGGAACTCGTCCTCGGCCAGCGCC
TCTGCCAAATTATCCTCGGTATCGTCCTGCTGCTTGCGCAATCGGCTCAA
TTCGTGATCCAAATCAGATCGCTCGATGGTCATGGCCTCAAAGTCGGCCA
TCTTTTGATGCAGTTCCGGATGGAGTACCACGCCCGGATTGATTAAACGA
CCAAAGCCCTTTGCCGATCTGGACATGTCGACTGATAACT

BO16821.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-PA 411 CG14071-RA 1..408 426..19 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-RC 585 CG14071-RC 76..483 426..19 2040 100 Minus
CG14071-RB 1225 CG14071-RB 150..557 426..19 2040 100 Minus
CG14071-RA 659 CG14071-RA 150..557 426..19 2040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10888371..10888778 19..426 2040 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:47:56 has no hits.

BO16821.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:11 Download gff for BO16821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-PA 1..411 16..426 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:24 Download gff for BO16821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 145..569 7..434 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:14 Download gff for BO16821.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 145..569 7..434 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:14 Download gff for BO16821.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10888359..10888783 7..434 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:24 Download gff for BO16821.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10888359..10888783 7..434 98   Plus

BO16821.5prime Sequence

440 bp (440 high quality bases) assembled on 2006-10-13

> BO16821.5prime
GAAGTTATCAGTCGACATGTCCAGATCGGCAAAGGGCTTTGGTCGTTTAA
TCAATCCGGGCGTGGTACTCCATCCGGAACTGCATCAAAAGATGGCCGAC
TTTGAGGCCATGACCATCGAGCGATCTGATTTGGATCACGAATTGAGCCG
ATTGCGCAAGCAGCAGGACGATACCGAGGATAATTTGGCAGAGGCGCTGG
CCGAGGACGAGTTCCAGTGCAATTTGAGTGGCCAGCCATTCGTTGCTCCC
AACGAGGACGAGCTGCAGGAAATTCTGAGGAATCACCTCGGTAGCATTAT
CAACAAGCTGGCTGCCACGTACGAGCGCCTTATTTACCTGGATGCGGACA
TCAGGAAGCTGAAGGGAGTCATTGAAAAGGCCATCACAGTGGCTAATGAG
GAATCGGCAGCAGCCGCCTCAATGGCAAGCTTTCTAGACC

BO16821.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-PA 411 CG14071-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-RC 585 CG14071-RC 76..483 17..424 2040 100 Plus
CG14071-RB 1225 CG14071-RB 150..557 17..424 2040 100 Plus
CG14071-RA 659 CG14071-RA 150..557 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10888371..10888778 424..17 2040 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:58:34 has no hits.

BO16821.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:11 Download gff for BO16821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-PA 1..411 17..427 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:44 Download gff for BO16821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 145..569 9..436 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:43 Download gff for BO16821.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 145..569 9..436 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:43 Download gff for BO16821.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10888359..10888783 9..436 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:44 Download gff for BO16821.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10888359..10888783 9..436 98   Minus

BO16821.complete Sequence

442 bp assembled on 2006-10-11

GenBank Submission: FJ633930

> BO16821.complete
GAAGTTATCAGTCGACATGTCCAGATCGGCAAAGGGCTTTGGTCGTTTAA
TCAATCCGGGCGTGGTACTCCATCCGGAACTGCATCAAAAGATGGCCGAC
TTTGAGGCCATGACCATCGAGCGATCTGATTTGGATCACGAATTGAGCCG
ATTGCGCAAGCAGCAGGACGATACCGAGGATAATTTGGCAGAGGCGCTGG
CCGAGGACGAGTTCCAGTGCAATTTGAGTGGCCAGCCATTCGTTGCTCCC
AACGAGGACGAGCTGCAGGAAATTCTGAGGAATCACCTCGGTAGCATTAT
CAACAAGCTGGCTGCCACGTACGAGCGCCTTATTTACCTGGATGCGGACA
TCAGGAAGCTGAAGGGAGTCATTGAAAAGGCCATCACAGTGGCTAATGAG
GAATCGGCAGCAGCCGCCTCAATGGCAAGCTTTCTAGACCAT

BO16821.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-RC 411 CG14071-PC 1..408 17..424 2040 100 Plus
CG14071-RB 411 CG14071-PB 1..408 17..424 2040 100 Plus
CG14071-RA 411 CG14071-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-RC 585 CG14071-RC 76..483 17..424 2040 100 Plus
CG14071-RB 1225 CG14071-RB 150..557 17..424 2040 100 Plus
CG14071-RA 659 CG14071-RA 150..557 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10888371..10888778 424..17 2040 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:40:21 has no hits.

BO16821.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:21 Download gff for BO16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 1..411 17..427 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:48 Download gff for BO16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 121..545 9..436 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:08 Download gff for BO16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 150..557 17..426 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:22 Download gff for BO16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 121..545 9..436 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:29 Download gff for BO16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14071-RA 150..557 17..426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:29 Download gff for BO16821.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10888368..10888778 17..426 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:08 Download gff for BO16821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10888368..10888778 17..426 99   Minus

BO16821.pep Sequence

Translation from 16 to 442

> BO16821.pep
MSRSAKGFGRLINPGVVLHPELHQKMADFEAMTIERSDLDHELSRLRKQQ
DDTEDNLAEALAEDEFQCNLSGQPFVAPNEDELQEILRNHLGSIINKLAA
TYERLIYLDADIRKLKGVIEKAITVANEESAAAASMASFLDH

BO16821.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14071-PC 136 CG14071-PC 1..136 1..136 681 100 Plus
CG14071-PB 136 CG14071-PB 1..136 1..136 681 100 Plus
CG14071-PA 136 CG14071-PA 1..136 1..136 681 100 Plus