Clone Sequence Records
BO16821.3prime Sequence
440 bp (440 high quality bases) assembled on 2006-10-13
> BO16821.3prime
ATGGTCTAGAAAGCTTGCCATTGAGGCGGCTGCTGCCGATTCCTCATTAG
CCACTGTGATGGCCTTTTCAATGACTCCCTTCAGCTTCCTGATGTCCGCA
TCCAGGTAAATAAGGCGCTCGTACGTGGCAGCCAGCTTGTTGATAATGCT
ACCGAGGTGATTCCTCAGAATTTCCTGCAGCTCGTCCTCGTTGGGAGCAA
CGAATGGCTGGCCACTCAAATTGCACTGGAACTCGTCCTCGGCCAGCGCC
TCTGCCAAATTATCCTCGGTATCGTCCTGCTGCTTGCGCAATCGGCTCAA
TTCGTGATCCAAATCAGATCGCTCGATGGTCATGGCCTCAAAGTCGGCCA
TCTTTTGATGCAGTTCCGGATGGAGTACCACGCCCGGATTGATTAAACGA
CCAAAGCCCTTTGCCGATCTGGACATGTCGACTGATAACT
BO16821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14071-PA | 411 | CG14071-RA | 1..408 | 426..19 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14071-RC | 585 | CG14071-RC | 76..483 | 426..19 | 2040 | 100 | Minus |
CG14071-RB | 1225 | CG14071-RB | 150..557 | 426..19 | 2040 | 100 | Minus |
CG14071-RA | 659 | CG14071-RA | 150..557 | 426..19 | 2040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10888371..10888778 | 19..426 | 2040 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:47:56 has no hits.
BO16821.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:11 Download gff for
BO16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-PA | 1..411 | 16..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:24 Download gff for
BO16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 145..569 | 7..434 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:14 Download gff for
BO16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 145..569 | 7..434 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:14 Download gff for
BO16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10888359..10888783 | 7..434 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:24 Download gff for
BO16821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10888359..10888783 | 7..434 | 98 | | Plus |
BO16821.5prime Sequence
440 bp (440 high quality bases) assembled on 2006-10-13
> BO16821.5prime
GAAGTTATCAGTCGACATGTCCAGATCGGCAAAGGGCTTTGGTCGTTTAA
TCAATCCGGGCGTGGTACTCCATCCGGAACTGCATCAAAAGATGGCCGAC
TTTGAGGCCATGACCATCGAGCGATCTGATTTGGATCACGAATTGAGCCG
ATTGCGCAAGCAGCAGGACGATACCGAGGATAATTTGGCAGAGGCGCTGG
CCGAGGACGAGTTCCAGTGCAATTTGAGTGGCCAGCCATTCGTTGCTCCC
AACGAGGACGAGCTGCAGGAAATTCTGAGGAATCACCTCGGTAGCATTAT
CAACAAGCTGGCTGCCACGTACGAGCGCCTTATTTACCTGGATGCGGACA
TCAGGAAGCTGAAGGGAGTCATTGAAAAGGCCATCACAGTGGCTAATGAG
GAATCGGCAGCAGCCGCCTCAATGGCAAGCTTTCTAGACC
BO16821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14071-PA | 411 | CG14071-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14071-RC | 585 | CG14071-RC | 76..483 | 17..424 | 2040 | 100 | Plus |
CG14071-RB | 1225 | CG14071-RB | 150..557 | 17..424 | 2040 | 100 | Plus |
CG14071-RA | 659 | CG14071-RA | 150..557 | 17..424 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10888371..10888778 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:58:34 has no hits.
BO16821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:11 Download gff for
BO16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-PA | 1..411 | 17..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:44 Download gff for
BO16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 145..569 | 9..436 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:43 Download gff for
BO16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 145..569 | 9..436 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:43 Download gff for
BO16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10888359..10888783 | 9..436 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:44 Download gff for
BO16821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10888359..10888783 | 9..436 | 98 | | Minus |
BO16821.complete Sequence
442 bp assembled on 2006-10-11
GenBank Submission: FJ633930
> BO16821.complete
GAAGTTATCAGTCGACATGTCCAGATCGGCAAAGGGCTTTGGTCGTTTAA
TCAATCCGGGCGTGGTACTCCATCCGGAACTGCATCAAAAGATGGCCGAC
TTTGAGGCCATGACCATCGAGCGATCTGATTTGGATCACGAATTGAGCCG
ATTGCGCAAGCAGCAGGACGATACCGAGGATAATTTGGCAGAGGCGCTGG
CCGAGGACGAGTTCCAGTGCAATTTGAGTGGCCAGCCATTCGTTGCTCCC
AACGAGGACGAGCTGCAGGAAATTCTGAGGAATCACCTCGGTAGCATTAT
CAACAAGCTGGCTGCCACGTACGAGCGCCTTATTTACCTGGATGCGGACA
TCAGGAAGCTGAAGGGAGTCATTGAAAAGGCCATCACAGTGGCTAATGAG
GAATCGGCAGCAGCCGCCTCAATGGCAAGCTTTCTAGACCAT
BO16821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14071-RC | 411 | CG14071-PC | 1..408 | 17..424 | 2040 | 100 | Plus |
CG14071-RB | 411 | CG14071-PB | 1..408 | 17..424 | 2040 | 100 | Plus |
CG14071-RA | 411 | CG14071-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14071-RC | 585 | CG14071-RC | 76..483 | 17..424 | 2040 | 100 | Plus |
CG14071-RB | 1225 | CG14071-RB | 150..557 | 17..424 | 2040 | 100 | Plus |
CG14071-RA | 659 | CG14071-RA | 150..557 | 17..424 | 2040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10888371..10888778 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:21 has no hits.
BO16821.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:21 Download gff for
BO16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 1..411 | 17..427 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:48 Download gff for
BO16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 121..545 | 9..436 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:08 Download gff for
BO16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 150..557 | 17..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:22 Download gff for
BO16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 121..545 | 9..436 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:29 Download gff for
BO16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14071-RA | 150..557 | 17..426 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:29 Download gff for
BO16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10888368..10888778 | 17..426 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:08 Download gff for
BO16821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10888368..10888778 | 17..426 | 99 | | Minus |
BO16821.pep Sequence
Translation from 16 to 442
> BO16821.pep
MSRSAKGFGRLINPGVVLHPELHQKMADFEAMTIERSDLDHELSRLRKQQ
DDTEDNLAEALAEDEFQCNLSGQPFVAPNEDELQEILRNHLGSIINKLAA
TYERLIYLDADIRKLKGVIEKAITVANEESAAAASMASFLDH
BO16821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14071-PC | 136 | CG14071-PC | 1..136 | 1..136 | 681 | 100 | Plus |
CG14071-PB | 136 | CG14071-PB | 1..136 | 1..136 | 681 | 100 | Plus |
CG14071-PA | 136 | CG14071-PA | 1..136 | 1..136 | 681 | 100 | Plus |