Clone Sequence Records
BO16823.5prime Sequence
509 bp (509 high quality bases) assembled on 2006-10-13
> BO16823.5prime
GAAGTTATCAGTCGACATGGATAAACCCACAACTAGCGCCGCTGCTGCTG
CGGCTCAGGATTCCAACCTTCTTCCGGACTCCCCACAACACGGACCAACG
TTGTCCAGCGCCTCCAGTTTCGAGGCACTGACGCGACACGACCCCAATCT
CAGTCGTTTGGCCACGAAAATGTTCAACAAAACGGAGGAGTACATCACAC
ACGAACTGAACGCTCCGCTGGAGGATTACAAGCTGCTGGAGGAGATGAAC
AAGGCTACGATTGCCAAGTACAAGGATATGCGGCAGATTGCCGAGAATCT
GAATACTTCGACCAGTGAATTGAGCCTTAAGTTCCAGCAATTAGCTCCGA
TGATGCAGCAAATCGATGAGATTTCCGACACCGTCGACAAATTGGAGGCG
GCGGCCTATAAACTGGACGCATACAGCATAGCCCTAGAAAATCGCGTCAA
GTGCGTGCTGCAAAGGAAATCCGGAGGCGGTCAAGTGGCACAAGCAAGCT
TTCTAGACC
BO16823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14145-PA | 480 | CG14145-RA | 1..473 | 17..489 | 2315 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blos2-RA | 645 | CG14145-RA | 69..545 | 17..493 | 2340 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11061639..11062115 | 17..493 | 2340 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:19:16 has no hits.
BO16823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:14 Download gff for
BO16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14145-PA | 1..480 | 17..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:22 Download gff for
BO16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blos2-RA | 65..555 | 14..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:29 Download gff for
BO16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blos2-RA | 65..555 | 14..504 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:29 Download gff for
BO16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11061635..11062125 | 14..504 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:22 Download gff for
BO16823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11054735..11055225 | 14..504 | 98 | | Plus |
BO16823.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ633931
> BO16823.complete
GAAGTTATCAGTCGACATGGATAAACCCACAACTAGCGCCGCTGCTGCTG
CGGCTCAGGATTCCAACCTTCTTCCGGACTCCCCACAACACGGACCAACG
TTGTCCAGCGCCTCCAGTTTCGAGGCACTGACGCGACACGACCCCAATCT
CAGTCGTTTGGCCACGAAAATGTTCAACAAAACGGAGGAGTACATCACAC
ACGAACTGAACGCTCCGCTGGAGGATTACAAGCTGCTGGAGGAGATGAAC
AAGGCTACGATTGCCAAGTACAAGGATATGCGGCAGATTGCCGAGAATCT
GAATACTTCGACCAGTGAATTGAGCCTTAAGTTCCAGCAATTAGCTCCGA
TGATGCAGCAAATCGATGAGATTTCCGACACCGTCGACAAATTGGAGGCG
GCGGCCTATAAACTGGACGCATACAGCATAGCCCTAGAAAATCGCGTCAA
GTGCGTGCTGCAAAGGAAATCCGGAGGCGGTCAAGTGGCACAAGCAAGCT
TTCTAGACCAT
BO16823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blos2-RA | 480 | CG14145-PA | 1..477 | 17..493 | 2340 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blos2-RA | 645 | CG14145-RA | 69..545 | 17..493 | 2340 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11061639..11062115 | 17..493 | 2340 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:48:34 has no hits.
BO16823.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:07 Download gff for
BO16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14145-RA | 1..480 | 17..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:57 Download gff for
BO16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14145-RA | 65..555 | 14..504 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:34 Download gff for
BO16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blos2-RA | 69..545 | 17..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:07 Download gff for
BO16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14145-RA | 1..480 | 17..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:44 Download gff for
BO16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Blos2-RA | 69..545 | 17..495 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:44 Download gff for
BO16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11061639..11062115 | 17..495 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:34 Download gff for
BO16823.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11054739..11055215 | 17..495 | 98 | | Plus |
BO16823.pep Sequence
Translation from 16 to 511
> BO16823.pep
MDKPTTSAAAAAAQDSNLLPDSPQHGPTLSSASSFEALTRHDPNLSRLAT
KMFNKTEEYITHELNAPLEDYKLLEEMNKATIAKYKDMRQIAENLNTSTS
ELSLKFQQLAPMMQQIDEISDTVDKLEAAAYKLDAYSIALENRVKCVLQR
KSGGGQVAQASFLDH
BO16823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Blos2-PA | 159 | CG14145-PA | 1..159 | 1..159 | 795 | 100 | Plus |
